jgi.p|Nanoce1779_2|574314, mRNA_840 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574314
Unique NamemRNA_840
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1725
Alignment locationscaffold_2:549244..551202 -

Link to JBrowse

Properties
Property NameValue
TranscriptId574400
TrackFilteredModels2
ProteinId574314
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:549244..551202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574314gene_840Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574314mRNA_840-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_840CDS_840Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_840 ID=mRNA_840|Name=jgi.p|Nanoce1779_2|574314|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp
AGATACAGGTGTGCACTGATAGGAAAGGAGCAGCAACAATACGAACGTCT
CGTTGTCTACCTGCCCTGGAGCTGGAGTCTCGCTAGTGGCCACTCGTTGA
CTTAGCCAGCCGAGAGCCTCCCTCCCTCCCTCCCTCCCACCCCGCTATCC
GCCCACAATCCCTAGGGGCTGCCCTGGCACTCAATGTCTGAGGATGCCAG
AAGAAACGGCCGCAGTACCTCCATGGCACAAAGAGAGAAGGCCATTCGAG
ATCTCATCGTCCAAAATCCTGTGCCTTTGGAGAAGCTTAGGGCCTTGGCC
CTGGCCCCCGGTGATGGATTCTGTAACAATGCGCTTCGATCCGTGATATG
GCCAAAGCTATTGGGCCTCAACCGCTTCGAATCTCAGCCCTCCTTCCATG
ACCAAGTGGCGCGCAATCAATGGAGTGACCAAATCGGGCGTGACGTCGCT
CGCTCGCTCTGGCACTACCACATGCCGCATGCCAAGAAGCGGAAGCGAGG
GAGTCGAAGAAGGCTGCTAGCGAAGATGATCAACGCCTTGATGAGCAAGC
ATCCGACTCTTCACTACTATCAAGGTTTTCACGACGTCCTCTCTGTCCTC
GTCCTCGTCATGACTGAAGACGATGATCTTTGCTTCGCAGTTGCTGAGCG
GGTAGCCCTCTACTATCTAGGTGATTATACCCGCCGACCAGACTTCTCTG
TGCTCACCCCTCTATTAGAACTGCTTCTCCCCCTCGTCGAAGCTGCTGAT
GGCGACGTCGGTGCTTGCCTCCGGGCGTGTGGCATCCACGCATACGTGTG
CTTGCCATGGGTCATTGCTTGGTGGGCGCATGATTGTCATAATCTCGAAA
TAACAGCTCGATTGTTCGATGCCTTTCTGTCAGGCCCTCCCTTATTTCCT
CTCTACCTTGCCGCCGCCATGATCCTGGAAGCCAAAACCGAGCTTTTTGC
TTTGGAGGACAAGGACTTCTCCGCAGTCCACTCCTTCCTCTCCCGCCTTG
CCTCCCGTCCCGACTTACCGGTGGAAACCCTCATCGCCCGTGCACATCGC
TTGCTTCTCTCCCTTCCTCCTGCCAAACTCGTTCGACTGCATGGTCACCC
TTTCTTGAGAGACCTGGCGAGGAAGAAAGAAGTGCACGCTTTGAATTTTC
CTCATGTGGAATGGTATAAAAAAGAAGCTCCCCCTGATTGGTTGCTGCGC
GAAGATCGACGACGGGAGGAAGGACGGAGTGTCCGGTGCAAACACACGAG
ACAGCGACGCCGACAGGCTTACCTAGCGGGAGTCCAGATGCCATCAGCGG
CGGGTGTTGTGGGTAACGAGAAAAAAGGGGCGTTGTGGTCGTCGGCTTCG
TCGCCGCCTTCCTCCACCTCACTCTGGGTGGCTGCGGCGGCCGTGGTGGG
GGTGGCGGCGGTCTTGTTCAAACTGGGGGAAGGGGATTTGATGGAGCTTT
GGTATAACAGAATGTCATGAGTAAATGTATCACCTGCAGGTATGTGCGTT
TGGAGTGAAATTGTTTTCATTTTATGGAACGAGGTAGGGAGAAGATTTTG
GCCAGCCAAATTGATAGGTTAGACGGATATCTGTTTATGTACGTATAGAC
AGTAGTGTGTATATGCTTGTAAATTTATAATTTTGGCATTTGTTACCGAG
GTTAAGAACTCAACGCATTTCGTGGGAACTGAGATGGAATGGGCCAAGAG
CCAAAAAGACGCTGATAACGCTTTT
back to top

protein sequence of jgi.p|Nanoce1779_2|574314

>mRNA_840-protein ID=mRNA_840-protein|Name=jgi.p|Nanoce1779_2|574314|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MSEDARRNGRSTSMAQREKAIRDLIVQNPVPLEKLRALALAPGDGFCNNA
LRSVIWPKLLGLNRFESQPSFHDQVARNQWSDQIGRDVARSLWHYHMPHA
KKRKRGSRRRLLAKMINALMSKHPTLHYYQGFHDVLSVLVLVMTEDDDLC
FAVAERVALYYLGDYTRRPDFSVLTPLLELLLPLVEAADGDVGACLRACG
IHAYVCLPWVIAWWAHDCHNLEITARLFDAFLSGPPLFPLYLAAAMILEA
KTELFALEDKDFSAVHSFLSRLASRPDLPVETLIARAHRLLLSLPPAKLV
RLHGHPFLRDLARKKEVHALNFPHVEWYKKEAPPDWLLREDRRREEGRSV
RCKHTRQRRRQAYLAGVQMPSAAGVVGNEKKGALWSSASSPPSSTSLWVA
AAAVVGVAAVLFKLGEGDLMELWYNRMS*
back to top

mRNA from alignment at scaffold_2:549244..551202-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_840 ID=mRNA_840|Name=jgi.p|Nanoce1779_2|574314|organism=Nannochloropsis oceanica|type=mRNA|length=1959bp|location=Sequence derived from alignment at scaffold_2:549244..551202- (Nannochloropsis oceanica)
AGATACAGGTGTGCACTGATAGGAAAGGAGCAGCAACAATACGAACGTCT
CGTTGTCTACCTGCCCTGGAGCTGGAGTCTCGCTAGTGGCCACTCGTTGA
CTTAGCCAGCCGAGAGCCTCCCTCCCTCCCTCCCTCCCACCCCGCTATCC
GCCCACAATCCCTAGGGGCTGCCCTGGCACTCAATGTCTGAGGATGCCAG
AAGAAACGGCCGCAGTACCTCCATGGCACAAAGAGAGAAGGCCATTCGAG
ATCTCATCGTCCAAAATCCTGTGCCTTTGGAGAAGCTTAGGGCCTTGGTA
AGTCGCCATCGAAATCGATTTCCACAAGCCCATTGGCAGATTCCCAAAAC
CCTTATCTTCGCTTGCCCTACCCGCGATCCCGATGCATACATGTTGCCCT
GAAGCTCTCCTCAACGTGCTGGGGTCCTACAATTATTGAAACCCCTCCCA
CCAAGACCCATTTCGCTTGCCCACAACGCACGCACACGTCCTCCTAATTG
AACCCTTTCCGCATCTCTGCCCCCTTCGTAGGCCCTGGCCCCCGGTGATG
GATTCTGTAACAATGCGCTTCGATCCGTGATATGGCCAAAGCTATTGGGC
CTCAACCGCTTCGAATCTCAGCCCTCCTTCCATGACCAAGTGGCGCGCAA
TCAATGGAGTGACCAAATCGGGCGTGACGTCGCTCGCTCGCTCTGGCACT
ACCACATGCCGCATGCCAAGAAGCGGAAGCGAGGGAGTCGAAGAAGGCTG
CTAGCGAAGATGATCAACGCCTTGATGAGCAAGCATCCGACTCTTCACTA
CTATCAAGGTTTTCACGACGTCCTCTCTGTCCTCGTCCTCGTCATGACTG
AAGACGATGATCTTTGCTTCGCAGTTGCTGAGCGGGTAGCCCTCTACTAT
CTAGGTGATTATACCCGCCGACCAGACTTCTCTGTGCTCACCCCTCTATT
AGAACTGCTTCTCCCCCTCGTCGAAGCTGCTGATGGCGACGTCGGTGCTT
GCCTCCGGGCGTGTGGCATCCACGCATACGTGTGCTTGCCATGGGTCATT
GCTTGGTGGGCGCATGATTGTCATAATCTCGAAATAACAGCTCGATTGTT
CGATGCCTTTCTGTCAGGCCCTCCCTTATTTCCTCTCTACCTTGCCGCCG
CCATGATCCTGGAAGCCAAAACCGAGCTTTTTGCTTTGGAGGACAAGGAC
TTCTCCGCAGTCCACTCCTTCCTCTCCCGCCTTGCCTCCCGTCCCGACTT
ACCGGTGGAAACCCTCATCGCCCGTGCACATCGCTTGCTTCTCTCCCTTC
CTCCTGCCAAACTCGTTCGACTGCATGGTCACCCTTTCTTGAGAGACCTG
GCGAGGAAGAAAGAAGTGCACGCTTTGAATTTTCCTCATGTGGAATGGTA
TAAAAAAGAAGCTCCCCCTGATTGGTTGCTGCGCGAAGATCGACGACGGG
AGGAAGGACGGAGTGTCCGGTGCAAACACACGAGACAGCGACGCCGACAG
GCTTACCTAGCGGGAGTCCAGATGCCATCAGCGGCGGGTGTTGTGGGTAA
CGAGAAAAAAGGGGCGTTGTGGTCGTCGGCTTCGTCGCCGCCTTCCTCCA
CCTCACTCTGGGTGGCTGCGGCGGCCGTGGTGGGGGTGGCGGCGGTCTTG
TTCAAACTGGGGGAAGGGGATTTGATGGAGCTTTGGTATAACAGAATGTC
ATGAGTAAATGTATCACCTGCAGGTATGTGCGTTTGGAGTGAAATTGTTT
TCATTTTATGGAACGAGGTAGGGAGAAGATTTTGGCCAGCCAAATTGATA
GGTTAGACGGATATCTGTTTATGTACGTATAGACAGTAGTGTGTATATGC
TTGTAAATTTATAATTTTGGCATTTGTTACCGAGGTTAAGAACTCAACGC
ATTTCGTGGGAACTGAGATGGAATGGGCCAAGAGCCAAAAAGACGCTGAT
AACGCTTTT
back to top

Coding sequence (CDS) from alignment at scaffold_2:549244..551202-

>mRNA_840 ID=mRNA_840|Name=jgi.p|Nanoce1779_2|574314|organism=Nannochloropsis oceanica|type=CDS|length=2574bp|location=Sequence derived from alignment at scaffold_2:549244..551202- (Nannochloropsis oceanica)
GCCCTGGCCCCCGGTGATGGATTCTGTAACAATGCGCTTCGATCCGTGAT
ATGGCCAAAGCTATTGGGCCTCAACCGCTTCGAATCTCAGCCCTCCTTCC
ATGACCAAGTGGCGCGCAATCAATGGAGTGACCAAATCGGGCGTGACGTC
GCTCGCTCGCTCTGGCACTACCACATGCCGCATGCCAAGAAGCGGAAGCG
AGGGAGTCGAAGAAGGCTGCTAGCGAAGATGATCAACGCCTTGATGAGCA
AGCATCCGACTCTTCACTACTATCAAGGTTTTCACGACGTCCTCTCTGTC
CTCGTCCTCGTCATGACTGAAGACGATGATCTTTGCTTCGCAGTTGCTGA
GCGGGTAGCCCTCTACTATCTAGGTGATTATACCCGCCGACCAGACTTCT
CTGTGCTCACCCCTCTATTAGAACTGCTTCTCCCCCTCGTCGAAGCTGCT
GATGGCGACGTCGGTGCTTGCCTCCGGGCGTGTGGCATCCACGCATACGT
GTGCTTGCCATGGGTCATTGCTTGGTGGGCGCATGATTGTCATAATCTCG
AAATAACAGCTCGATTGTTCGATGCCTTTCTGTCAGGCCCTCCCTTATTT
CCTCTCTACCTTGCCGCCGCCATGATCCTGGAAGCCAAAACCGAGCTTTT
TGCTTTGGAGGACAAGGACTTCTCCGCAGTCCACTCCTTCCTCTCCCGCC
TTGCCTCCCGTCCCGACTTACCGGTGGAAACCCTCATCGCCCGTGCACAT
CGCTTGCTTCTCTCCCTTCCTCCTGCCAAACTCGTTCGACTGCATGGTCA
CCCTTTCTTGAGAGACCTGGCGAGGAAGAAAGAAGTGCACGCTTTGAATT
TTCCTCATGTGGAATGGTATAAAAAAGAAGCTCCCCCTGATTGGTTGCTG
CGCGAAGATCGACGACGGGAGGAAGGACGGAGTGTCCGGTGCAAACACAC
GAGACAGCGACGCCGACAGGCTTACCTAGCGGGAGTCCAGATGCCATCAG
CGGCGGGTGTTGTGGGTAACGAGAAAAAAGGGGCGTTGTGGTCGTCGGCT
TCGTCGCCGCCTTCCTCCACCTCACTCTGGGTGGCTGCGGCGGCCGTGGT
GGGGGTGGCGGCGGTCTTGTTCAAACTGGGGGAAGGGGATTTGATGGAGC
TTTGGTATAACAGAATGTCATGAATGTCTGAGGATGCCAGAAGAAACGGC
CGCAGTACCTCCATGGCACAAAGAGAGAAGGCCATTCGAGATCTCATCGT
CCAAAATCCTGTGCCTTTGGAGAAGCTTAGGGCCTTGGCCCTGGCCCCCG
GTGATGGATTCTGTAACAATGCGCTTCGATCCGTGATATGGCCAAAGCTA
TTGGGCCTCAACCGCTTCGAATCTCAGCCCTCCTTCCATGACCAAGTGGC
GCGCAATCAATGGAGTGACCAAATCGGGCGTGACGTCGCTCGCTCGCTCT
GGCACTACCACATGCCGCATGCCAAGAAGCGGAAGCGAGGGAGTCGAAGA
AGGCTGCTAGCGAAGATGATCAACGCCTTGATGAGCAAGCATCCGACTCT
TCACTACTATCAAGGTTTTCACGACGTCCTCTCTGTCCTCGTCCTCGTCA
TGACTGAAGACGATGATCTTTGCTTCGCAGTTGCTGAGCGGGTAGCCCTC
TACTATCTAGGTGATTATACCCGCCGACCAGACTTCTCTGTGCTCACCCC
TCTATTAGAACTGCTTCTCCCCCTCGTCGAAGCTGCTGATGGCGACGTCG
GTGCTTGCCTCCGGGCGTGTGGCATCCACGCATACGTGTGCTTGCCATGG
GTCATTGCTTGGTGGGCGCATGATTGTCATAATCTCGAAATAACAGCTCG
ATTGTTCGATGCCTTTCTGTCAGGCCCTCCCTTATTTCCTCTCTACCTTG
CCGCCGCCATGATCCTGGAAGCCAAAACCGAGCTTTTTGCTTTGGAGGAC
AAGGACTTCTCCGCAGTCCACTCCTTCCTCTCCCGCCTTGCCTCCCGTCC
CGACTTACCGGTGGAAACCCTCATCGCCCGTGCACATCGCTTGCTTCTCT
CCCTTCCTCCTGCCAAACTCGTTCGACTGCATGGTCACCCTTTCTTGAGA
GACCTGGCGAGGAAGAAAGAAGTGCACGCTTTGAATTTTCCTCATGTGGA
ATGGTATAAAAAAGAAGCTCCCCCTGATTGGTTGCTGCGCGAAGATCGAC
GACGGGAGGAAGGACGGAGTGTCCGGTGCAAACACACGAGACAGCGACGC
CGACAGGCTTACCTAGCGGGAGTCCAGATGCCATCAGCGGCGGGTGTTGT
GGGTAACGAGAAAAAAGGGGCGTTGTGGTCGTCGGCTTCGTCGCCGCCTT
CCTCCACCTCACTCTGGGTGGCTGCGGCGGCCGTGGTGGGGGTGGCGGCG
GTCTTGTTCAAACTGGGGGAAGGGGATTTGATGGAGCTTTGGTATAACAG
AATGTCATGAATGTCTGAGGATGCCAGAAGAAACGGCCGCAGTACCTCCA
TGGCACAAAGAGAGAAGGCCATTCGAGATCTCATCGTCCAAAATCCTGTG
CCTTTGGAGAAGCTTAGGGCCTTG
back to top
Synonyms
Publications