jgi.p|Nanoce1779_2|162378, mRNA_7645 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|162378
Unique NamemRNA_7645
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length749
Alignment locationscaffold_20:484231..485675 +

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Properties
Property NameValue
TranscriptId162464
TrackFilteredModels2
ProteinId162378
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:484231..485675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|162378gene_7645Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|162378mRNA_7645-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7645CDS_7645Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7645 ID=mRNA_7645|Name=jgi.p|Nanoce1779_2|162378|organism=Nannochloropsis oceanica|type=mRNA|length=749bp
GGGAGGGAAGACAAGCATCATCGAGAAGCAGGGAGGGGCAGTGGGAAGAG
GGAAAAAAGGTGGTGACGCCGCTGTCCGTATTGGGAGGAGGAGGGGAGGA
AGGGAGGGACGGAGGGATGGAGGGAGGGAAGCGGAGTTTTCCCAACAAGA
CGCTGCTGGCCCTGGGAATAGTGCTGCCGACTCTGTTGGCCATCTGCGCG
GCGCTCTACCAGTCGGGGGGGCTGCACCACGTGCAGGGGATAAACGTAGC
CGACGTCTTTCAGCAAGTTGAAGCGAAAATCACCGAGCTCGGTCCGTGGG
GCTACGTGCTTTTCTCCGTCATCTACATTGTTGCTGAGATCCTCGCCATC
CCCGCCGTGCCTCTGAGTGCGAGCTCGGGCTATCTTTTTGGGCTAATCAA
CGGTACGGCTATCGTGGTTCTCTCGGCTACTATAGCCGCCGCCACCTCCT
TCCTCATTGGCCGAACCCTCCTCCGGTCGACTGTGGAGAAGTGGATGGAG
GGTTATCCCAAGTTCCGAGCCCTTGACAAGGCTATTGCTGACGAGGGCTT
CAAAATCATCCTCCTCCTCCGCCTTTCCCCTATCTTCCCTTTCGCCCTCT
CCAACTACATGTACGGCCTCACCGCAGTTGATTTCTGGCCATATTTTTGG
GCAACTTTAATCGGCTTTTTCCCCGGGACCCTCGCTTACGTCTACAGCGG
GTGAGGAGGGAGGGAGGGAGAGAGGGAGGGCGGGAGGGTAGAGACAAGA
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protein sequence of jgi.p|Nanoce1779_2|162378

>mRNA_7645-protein ID=mRNA_7645-protein|Name=jgi.p|Nanoce1779_2|162378|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MEGGKRSFPNKTLLALGIVLPTLLAICAALYQSGGLHHVQGINVADVFQQ
VEAKITELGPWGYVLFSVIYIVAEILAIPAVPLSASSGYLFGLINGTAIV
VLSATIAAATSFLIGRTLLRSTVEKWMEGYPKFRALDKAIADEGFKIILL
LRLSPIFPFALSNYMYGLTAVDFWPYFWATLIGFFPGTLAYVYSG*
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mRNA from alignment at scaffold_20:484231..485675+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7645 ID=mRNA_7645|Name=jgi.p|Nanoce1779_2|162378|organism=Nannochloropsis oceanica|type=mRNA|length=1445bp|location=Sequence derived from alignment at scaffold_20:484231..485675+ (Nannochloropsis oceanica)
GGGAGGGAAGACAAGCATCATCGAGAAGCAGGGAGGGGCAGTGGGAAGAG
GGAAAAAAGGTGGTGACGCCGCTGTCCGTATTGGGAGGAGGAGGGGAGGA
AGGGAGGGACGGAGGGATGGAGGGAGGGAAGCGGAGTTTTCCCAACAAGA
CGCTGCTGGCCCTGGGAATAGTGCTGCCGACTCTGTTGGGTGAGGAGGGG
GGGGGGGGAGGGAGAGAGGGAAGGAGGGAGGGAGGAAGGGACGGATGGAG
CGTTGCGAATGCATTGGAGCCATCTGGTTTTTTAAATTCACCCCTCCCTC
CCGTCCATCCCTCCCTCCCGTCCATCCCTCCCTCCCTTACCTCCCTTCCT
TCCCTCCCTAGCCATCTGCGCGGCGCTCTACCAGTCGGGGGGGCTGCACC
ACGTGCAGGGGATAAACGTAGCCGACGTCTTTCAGCAAGTTGAAGCGAAA
ATCACCGAGCTCGGTCCGTGGGGCTACGTGCTTTTCTCCGTCATCTACAT
TGTTGCTGAGGTACGTGAATGTCGCTGGTCCTTCCCTCTCCCTCCCTCCC
TCCTTCCCTCCCTTCCTCCTTGTCAAGGCTGCTCCTTCCTTCTATCCCTT
TTCCCCTCCCCCCCTCCCTCCCTCCTCTCCGCTCTTTCACCCTCCCTTGA
TCCTCGTCACCACTCATACCTCCCTTCTGACCCCTCCCTCCCTCCCTCCC
TCCCTCCATAGATCCTCGCCATCCCCGCCGTGCCTCTGAGTGCGAGCTCG
GGCTATCTTTTTGGGCTAATCAACGGTACGGCTATCGTGGTTCTCTCGGC
TACTATAGCCGCCGCCACCTCCTTCCTCATTGGCCGAACCCTCCTCCGGT
CGACTGTGGAGAAGGTAGGCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
TCACCCCTCCTTCCTTCCCTCCTTTACACCTGCTTTCCTCCCTCCCTCCC
TTTCCCCCTCCCTCTTTCGTACAAGCCCACCAACCATCGCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTTCCCCCCTCCTTCCTTCAGTGGATGGAGGGT
TATCCCAAGTTCCGAGCCCTTGACAAGGCTATTGCTGACGAGGGCTTCAA
AATCATCCTCCTCCTCCGCCTTTCCCCTATCTTCCCTTTCGCCCTCTCCA
ACTACATGTGAGTCTTTCTCCTCTCCCTCCCTCCTCCCCTCCCTCCCCCC
CTCCCTCCTCATCGTGTTCCGCCCGTCGAGCCCATCAAAAGGAGTCCCAT
ATCCCCTCCCTTTCCACCACTCATAAGACACACCCTCCCCTCCCTCCCTC
CTGCAGGTACGGCCTCACCGCAGTTGATTTCTGGCCATATTTTTGGGCAA
CTTTAATCGGCTTTTTCCCCGGGACCCTCGCTTACGTCTACAGCGGGTGA
GGAGGGAGGGAGGGAGAGAGGGAGGGCGGGAGGGTAGAGACAAGA
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Coding sequence (CDS) from alignment at scaffold_20:484231..485675+

>mRNA_7645 ID=mRNA_7645|Name=jgi.p|Nanoce1779_2|162378|organism=Nannochloropsis oceanica|type=CDS|length=2940bp|location=Sequence derived from alignment at scaffold_20:484231..485675+ (Nannochloropsis oceanica)
ATGGAGGGAGGGAAGCGGAGTTTTCCCAACAAGACGCTGCTGGCCCTGGG
AATAGTGCTGCCGACTCTGTTGGCCATCTGCGCGGCGCTCTACCAGTCGG
GGGGGCTGCACCACGTGCAGGGGATAAACGTAGCCGACGTCTTTCAGCAA
GTTGAAGCGAAAATCACCGAGCTCGGTCCGTGGGGCTACGTGCTTTTCTC
CGTCATCTACATTGTTGCTGAGATCCTCGCCATCCCCGCCGTGCCTCTGA
GTGCGAGCTCGGGCTATCTTTTTGGGCTAATCAACGGTACGGCTATCGTG
GTTCTCTCGGCTACTATAGCCGCCGCCACCTCCTTCCTCATTGGCCGAAC
CCTCCTCCGGTCGACTGTGGAGAAGTGGATGGAGGGTTATCCCAAGTTCC
GAGCCCTTGACAAGGCTATTGCTGACGAGGGCTTCAAAATCATCCTCCTC
CTCCGCCTTTCCCCTATCTTCCCTTTCGCCCTCTCCAACTACATGTACGG
CCTCACCGCAGTTGATTTCTGGCCATATTTTTGGGCAACTTTAATCGGCT
TTTTCCCCGGGACCCTCGCTTACGTCTACAGCGGGTGAATGGAGGGAGGG
AAGCGGAGTTTTCCCAACAAGACGCTGCTGGCCCTGGGAATAGTGCTGCC
GACTCTGTTGGCCATCTGCGCGGCGCTCTACCAGTCGGGGGGGCTGCACC
ACGTGCAGGGGATAAACGTAGCCGACGTCTTTCAGCAAGTTGAAGCGAAA
ATCACCGAGCTCGGTCCGTGGGGCTACGTGCTTTTCTCCGTCATCTACAT
TGTTGCTGAGATCCTCGCCATCCCCGCCGTGCCTCTGAGTGCGAGCTCGG
GCTATCTTTTTGGGCTAATCAACGGTACGGCTATCGTGGTTCTCTCGGCT
ACTATAGCCGCCGCCACCTCCTTCCTCATTGGCCGAACCCTCCTCCGGTC
GACTGTGGAGAAGTGGATGGAGGGTTATCCCAAGTTCCGAGCCCTTGACA
AGGCTATTGCTGACGAGGGCTTCAAAATCATCCTCCTCCTCCGCCTTTCC
CCTATCTTCCCTTTCGCCCTCTCCAACTACATGTACGGCCTCACCGCAGT
TGATTTCTGGCCATATTTTTGGGCAACTTTAATCGGCTTTTTCCCCGGGA
CCCTCGCTTACGTCTACAGCGGGTGAATGGAGGGAGGGAAGCGGAGTTTT
CCCAACAAGACGCTGCTGGCCCTGGGAATAGTGCTGCCGACTCTGTTGGC
CATCTGCGCGGCGCTCTACCAGTCGGGGGGGCTGCACCACGTGCAGGGGA
TAAACGTAGCCGACGTCTTTCAGCAAGTTGAAGCGAAAATCACCGAGCTC
GGTCCGTGGGGCTACGTGCTTTTCTCCGTCATCTACATTGTTGCTGAGAT
CCTCGCCATCCCCGCCGTGCCTCTGAGTGCGAGCTCGGGCTATCTTTTTG
GGCTAATCAACGGTACGGCTATCGTGGTTCTCTCGGCTACTATAGCCGCC
GCCACCTCCTTCCTCATTGGCCGAACCCTCCTCCGGTCGACTGTGGAGAA
GTGGATGGAGGGTTATCCCAAGTTCCGAGCCCTTGACAAGGCTATTGCTG
ACGAGGGCTTCAAAATCATCCTCCTCCTCCGCCTTTCCCCTATCTTCCCT
TTCGCCCTCTCCAACTACATGTACGGCCTCACCGCAGTTGATTTCTGGCC
ATATTTTTGGGCAACTTTAATCGGCTTTTTCCCCGGGACCCTCGCTTACG
TCTACAGCGGGTGAATGGAGGGAGGGAAGCGGAGTTTTCCCAACAAGACG
CTGCTGGCCCTGGGAATAGTGCTGCCGACTCTGTTGGCCATCTGCGCGGC
GCTCTACCAGTCGGGGGGGCTGCACCACGTGCAGGGGATAAACGTAGCCG
ACGTCTTTCAGCAAGTTGAAGCGAAAATCACCGAGCTCGGTCCGTGGGGC
TACGTGCTTTTCTCCGTCATCTACATTGTTGCTGAGATCCTCGCCATCCC
CGCCGTGCCTCTGAGTGCGAGCTCGGGCTATCTTTTTGGGCTAATCAACG
GTACGGCTATCGTGGTTCTCTCGGCTACTATAGCCGCCGCCACCTCCTTC
CTCATTGGCCGAACCCTCCTCCGGTCGACTGTGGAGAAGTGGATGGAGGG
TTATCCCAAGTTCCGAGCCCTTGACAAGGCTATTGCTGACGAGGGCTTCA
AAATCATCCTCCTCCTCCGCCTTTCCCCTATCTTCCCTTTCGCCCTCTCC
AACTACATGTACGGCCTCACCGCAGTTGATTTCTGGCCATATTTTTGGGC
AACTTTAATCGGCTTTTTCCCCGGGACCCTCGCTTACGTCTACAGCGGGT
GAATGGAGGGAGGGAAGCGGAGTTTTCCCAACAAGACGCTGCTGGCCCTG
GGAATAGTGCTGCCGACTCTGTTGGCCATCTGCGCGGCGCTCTACCAGTC
GGGGGGGCTGCACCACGTGCAGGGGATAAACGTAGCCGACGTCTTTCAGC
AAGTTGAAGCGAAAATCACCGAGCTCGGTCCGTGGGGCTACGTGCTTTTC
TCCGTCATCTACATTGTTGCTGAGATCCTCGCCATCCCCGCCGTGCCTCT
GAGTGCGAGCTCGGGCTATCTTTTTGGGCTAATCAACGGTACGGCTATCG
TGGTTCTCTCGGCTACTATAGCCGCCGCCACCTCCTTCCTCATTGGCCGA
ACCCTCCTCCGGTCGACTGTGGAGAAGTGGATGGAGGGTTATCCCAAGTT
CCGAGCCCTTGACAAGGCTATTGCTGACGAGGGCTTCAAAATCATCCTCC
TCCTCCGCCTTTCCCCTATCTTCCCTTTCGCCCTCTCCAACTACATGTAC
GGCCTCACCGCAGTTGATTTCTGGCCATATTTTTGGGCAACTTTAATCGG
CTTTTTCCCCGGGACCCTCGCTTACGTCTACAGCGGGTGA
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Synonyms
Publications