jgi.p|Nanoce1779_2|599720, mRNA_7701 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599720
Unique NamemRNA_7701
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1149
Alignment locationscaffold_21:117990..119482 -

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Properties
Property NameValue
TranscriptId599806
TrackFilteredModels2
ProteinId599720
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:117990..119482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599720gene_7701Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599720mRNA_7701-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7701CDS_7701Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7701 ID=mRNA_7701|Name=jgi.p|Nanoce1779_2|599720|organism=Nannochloropsis oceanica|type=mRNA|length=1149bp
ACAGCGACGCCACGACCATCGTCCCTTTCCGCTCCCAACATTCTCAGCAC
TAGATACTGCGCCCTTTGTTAGGGAAGGAATAGGAACGAGTACACCGTCA
AGGTACAGACGCTAGATAGTAAGATGGAGGCACTTCTAGGCCGTGTCGCA
AGACTAGGCGCTGGTGTGGCAGGGGCAGCTTTTGTGGGCAACAACTTTTT
GTTCAACGTGGAAGGCGGGTACCGCGCAGTGGTCTTCGATCGGTTCAACG
GGGTGCTCCCGAAGCCATTGGAGGAAGGCACGAGCATCGTTATTCCTGTT
CTCCAGAGCGCCTACCTGTTCGACGTCCGTGCCAAACCGCGTGTCATTAA
CTCCGTCACGGGAACCAAGGACCTGCAACACGTCAACATCTCCCTCCGTG
TCCTCTCCAGGCCCGTCGAGCAGAAGCTCCCCGAGATTTTCTCCAAGATC
GGTATTGACATCGACGAGCGAGTCCTGCCCGGTGTGGGGAATGAGGTACT
GAAAGCTGTCGTTGCCCAGTACAATGCCGAAGAGCTGTTGAGCAAGCGTG
AGCAGATCTCTCACCAGATCCGCATGAACCTTATCAAGCGCGCCAGCGAA
TTTCACCTTATTTTGGACGACGTCTCCATCACCCACTTGACCTTTTCCAA
GGAGTTCACCAAGGCCATCGAGCAAAAGCAGGTGGCGGAGCAGGATGCCG
AGCGACAGATGTACTTGGTGCAGCGGGCGGACCAGGAGCGAAAGGCGGTG
GTTATCCGCGCCGAGGGTGAGGCTGAGGCCGCCGGCAAGATCTCCAAGGC
AGTGGCAGACTACGGGAGCGCCTTGATTGAGATCCGACGAATTGATGCTG
CGCGTGACATTGCCGATATTCTGAGTAAGAGTCGCAATATCACTTATCTT
CCTGGTGGACAGAACTCGGGTCTGCTTTTGGGCTTGACGGCGGGGCAGGC
GTAAAGGATAAGTAAACGGAGGGAGGGGGAAATAGAGCGGGAGGGAGATG
AGTTGAGGAAAGACCCGTAGAAGTGTACTCAACGGGCCCCTTTATTTGGG
AGGAAATGGGTCAAAACCAGAAAGAAAGAGGATGAGAGAAGAGAAGATAC
AACTAAAACAACAACGACATCCGAAAGAAAGAAACGAACGACAGAACAA
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protein sequence of jgi.p|Nanoce1779_2|599720

>mRNA_7701-protein ID=mRNA_7701-protein|Name=jgi.p|Nanoce1779_2|599720|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MEALLGRVARLGAGVAGAAFVGNNFLFNVEGGYRAVVFDRFNGVLPKPLE
EGTSIVIPVLQSAYLFDVRAKPRVINSVTGTKDLQHVNISLRVLSRPVEQ
KLPEIFSKIGIDIDERVLPGVGNEVLKAVVAQYNAEELLSKREQISHQIR
MNLIKRASEFHLILDDVSITHLTFSKEFTKAIEQKQVAEQDAERQMYLVQ
RADQERKAVVIRAEGEAEAAGKISKAVADYGSALIEIRRIDAARDIADIL
SKSRNITYLPGGQNSGLLLGLTAGQA*
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mRNA from alignment at scaffold_21:117990..119482-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7701 ID=mRNA_7701|Name=jgi.p|Nanoce1779_2|599720|organism=Nannochloropsis oceanica|type=mRNA|length=1493bp|location=Sequence derived from alignment at scaffold_21:117990..119482- (Nannochloropsis oceanica)
ACAGCGACGCCACGACCATCGTCCCTTTCCGCTCCCAACATTCTCAGCAC
TAGATACTGCGCCCTTTGTTAGGGAAGGAATAGGAACGAGTACACCGTCA
AGGTACGCATTCTCGTCATGAGCGACCATCACGTATATGCCTCTCCAGTT
ACTTGATCAAGAGCCGTGGGGCTCTGCTGGACGAGTGAAAAAATGCAGTG
AGAAAGGAAAAGCACCCGCATCATTATCGTTATCATGACTCACTCATCCC
TTCCTCCCTGTCACACCACAGGTACAGACGCTAGATAGTAAGATGGAGGC
ACTTCTAGGCCGTGTCGCAAGACTAGGCGCTGGTGTGGCAGGGGCAGCTT
TTGTGGGCAACAACTTTTTGTTCAACGGTAGGTCGTTTGTGACTCCCACC
CCAGAGAGGACGAGGACAGGGCCTGCACGCACATCACATTTACTTGCGGA
GGCATGCATACCAACTTTTCGGCAAAACGCCCTTTGACATCAAGATCCCT
TTCAGCACTCACCCTTTCTGCTCTCCCTCCATCCTCTTTCCCAAAATCTC
AGTGGAAGGCGGGTACCGCGCAGTGGTCTTCGATCGGTTCAACGGGGTGC
TCCCGAAGCCATTGGAGGAAGGCACGAGCATCGTTATTCCTGTTCTCCAG
AGCGCCTACCTGTTCGACGTCCGTGCCAAACCGCGTGTCATTAACTCCGT
CACGGGAACCAAGGACCTGCAACACGTCAACATCTCCCTCCGTGTCCTCT
CCAGGCCCGTCGAGCAGAAGCTCCCCGAGATTTTCTCCAAGATCGGTATT
GACATCGACGAGCGAGTCCTGCCCGGTGTGGGGAATGAGGTACTGAAAGC
TGTCGTTGCCCAGTACAATGCCGAAGAGCTGTTGAGCAAGCGTGAGCAGA
TCTCTCACCAGATCCGCATGAACCTTATCAAGCGCGCCAGCGAATTTCAC
CTTATTTTGGACGACGTCTCCATCACCCACTTGACCTTTTCCAAGGAGTT
CACCAAGGCCATCGAGCAAAAGCAGGTGGCGGAGCAGGATGCCGAGCGAC
AGATGTACTTGGTGCAGCGGGCGGACCAGGAGCGAAAGGCGGTGGTTATC
CGCGCCGAGGGTGAGGCTGAGGCCGCCGGCAAGATCTCCAAGGCAGTGGC
AGACTACGGGAGCGCCTTGATTGAGATCCGACGAATTGATGCTGCGCGTG
ACATTGCCGATATTCTGAGTAAGAGTCGCAATATCACTTATCTTCCTGGT
GGACAGAACTCGGGTCTGCTTTTGGGCTTGACGGCGGGGCAGGCGTAAAG
GATAAGTAAACGGAGGGAGGGGGAAATAGAGCGGGAGGGAGATGAGTTGA
GGAAAGACCCGTAGAAGTGTACTCAACGGGCCCCTTTATTTGGGAGGAAA
TGGGTCAAAACCAGAAAGAAAGAGGATGAGAGAAGAGAAGATACAACTAA
AACAACAACGACATCCGAAAGAAAGAAACGAACGACAGAACAA
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Coding sequence (CDS) from alignment at scaffold_21:117990..119482-

>mRNA_7701 ID=mRNA_7701|Name=jgi.p|Nanoce1779_2|599720|organism=Nannochloropsis oceanica|type=CDS|length=1662bp|location=Sequence derived from alignment at scaffold_21:117990..119482- (Nannochloropsis oceanica)
TGGAAGGCGGGTACCGCGCAGTGGTCTTCGATCGGTTCAACGGGGTGCTC
CCGAAGCCATTGGAGGAAGGCACGAGCATCGTTATTCCTGTTCTCCAGAG
CGCCTACCTGTTCGACGTCCGTGCCAAACCGCGTGTCATTAACTCCGTCA
CGGGAACCAAGGACCTGCAACACGTCAACATCTCCCTCCGTGTCCTCTCC
AGGCCCGTCGAGCAGAAGCTCCCCGAGATTTTCTCCAAGATCGGTATTGA
CATCGACGAGCGAGTCCTGCCCGGTGTGGGGAATGAGGTACTGAAAGCTG
TCGTTGCCCAGTACAATGCCGAAGAGCTGTTGAGCAAGCGTGAGCAGATC
TCTCACCAGATCCGCATGAACCTTATCAAGCGCGCCAGCGAATTTCACCT
TATTTTGGACGACGTCTCCATCACCCACTTGACCTTTTCCAAGGAGTTCA
CCAAGGCCATCGAGCAAAAGCAGGTGGCGGAGCAGGATGCCGAGCGACAG
ATGTACTTGGTGCAGCGGGCGGACCAGGAGCGAAAGGCGGTGGTTATCCG
CGCCGAGGGTGAGGCTGAGGCCGCCGGCAAGATCTCCAAGGCAGTGGCAG
ACTACGGGAGCGCCTTGATTGAGATCCGACGAATTGATGCTGCGCGTGAC
ATTGCCGATATTCTGAGTAAGAGTCGCAATATCACTTATCTTCCTGGTGG
ACAGAACTCGGGTCTGCTTTTGGGCTTGACGGCGGGGCAGGCGTAAATGG
AGGCACTTCTAGGCCGTGTCGCAAGACTAGGCGCTGGTGTGGCAGGGGCA
GCTTTTGTGGGCAACAACTTTTTGTTCAACGTGGAAGGCGGGTACCGCGC
AGTGGTCTTCGATCGGTTCAACGGGGTGCTCCCGAAGCCATTGGAGGAAG
GCACGAGCATCGTTATTCCTGTTCTCCAGAGCGCCTACCTGTTCGACGTC
CGTGCCAAACCGCGTGTCATTAACTCCGTCACGGGAACCAAGGACCTGCA
ACACGTCAACATCTCCCTCCGTGTCCTCTCCAGGCCCGTCGAGCAGAAGC
TCCCCGAGATTTTCTCCAAGATCGGTATTGACATCGACGAGCGAGTCCTG
CCCGGTGTGGGGAATGAGGTACTGAAAGCTGTCGTTGCCCAGTACAATGC
CGAAGAGCTGTTGAGCAAGCGTGAGCAGATCTCTCACCAGATCCGCATGA
ACCTTATCAAGCGCGCCAGCGAATTTCACCTTATTTTGGACGACGTCTCC
ATCACCCACTTGACCTTTTCCAAGGAGTTCACCAAGGCCATCGAGCAAAA
GCAGGTGGCGGAGCAGGATGCCGAGCGACAGATGTACTTGGTGCAGCGGG
CGGACCAGGAGCGAAAGGCGGTGGTTATCCGCGCCGAGGGTGAGGCTGAG
GCCGCCGGCAAGATCTCCAAGGCAGTGGCAGACTACGGGAGCGCCTTGAT
TGAGATCCGACGAATTGATGCTGCGCGTGACATTGCCGATATTCTGAGTA
AGAGTCGCAATATCACTTATCTTCCTGGTGGACAGAACTCGGGTCTGCTT
TTGGGCTTGACGGCGGGGCAGGCGTAAATGGAGGCACTTCTAGGCCGTGT
CGCAAGACTAGGCGCTGGTGTGGCAGGGGCAGCTTTTGTGGGCAACAACT
TTTTGTTCAACG
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Synonyms
Publications