jgi.p|Nanoce1779_2|182500, mRNA_8010 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|182500
Unique NamemRNA_8010
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length375
Alignment locationscaffold_22:430055..430429 +

Link to JBrowse

Properties
Property NameValue
TranscriptId182586
TrackFilteredModels2
ProteinId182500
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:430055..430429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|182500gene_8010Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|182500mRNA_8010-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8010CDS_8010Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8010 ID=mRNA_8010|Name=jgi.p|Nanoce1779_2|182500|organism=Nannochloropsis oceanica|type=mRNA|length=375bp
TTGCATTCTCTCAGGGCGTCGTGTGCCGTCCAATCAGAAAGTGCCCCGTT
GTCAAATATGTTTTCGGGATGTCAGATAGTATATTTGTTTTTCATGCTTC
ACTTCGTACGCCTTGTTCCTTGCCATCGTGGGGGACGACTCTATTTTTTG
TGGAGTGTATCATGGCATGTCAAATCATCACCCAACCCCACCACGCATCT
CCTTGCACTACACGCCCGTGGGATAAGCTCGATAGGTTCTGGTTTTGGCC
ACTTAGACGCCGTCCTACAAGACCTTGAAAATACGAAATTCGAGCTGTGA
ACTCATGGCTTCCGGTCCCACTCTCCCATGCGCGCTTTGGCTGGTCTATG
CCTCTAGCTCCACACAACACACTAG
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protein sequence of jgi.p|Nanoce1779_2|182500

>mRNA_8010-protein ID=mRNA_8010-protein|Name=jgi.p|Nanoce1779_2|182500|organism=Nannochloropsis oceanica|type=polypeptide|length=81bp
MFSGCQIVYLFFMLHFVRLVPCHRGGRLYFLWSVSWHVKSSPNPTTHLLA
LHARGISSIGSGFGHLDAVLQDLENTKFEL*
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mRNA from alignment at scaffold_22:430055..430429+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8010 ID=mRNA_8010|Name=jgi.p|Nanoce1779_2|182500|organism=Nannochloropsis oceanica|type=mRNA|length=375bp|location=Sequence derived from alignment at scaffold_22:430055..430429+ (Nannochloropsis oceanica)
TTGCATTCTCTCAGGGCGTCGTGTGCCGTCCAATCAGAAAGTGCCCCGTT
GTCAAATATGTTTTCGGGATGTCAGATAGTATATTTGTTTTTCATGCTTC
ACTTCGTACGCCTTGTTCCTTGCCATCGTGGGGGACGACTCTATTTTTTG
TGGAGTGTATCATGGCATGTCAAATCATCACCCAACCCCACCACGCATCT
CCTTGCACTACACGCCCGTGGGATAAGCTCGATAGGTTCTGGTTTTGGCC
ACTTAGACGCCGTCCTACAAGACCTTGAAAATACGAAATTCGAGCTGTGA
ACTCATGGCTTCCGGTCCCACTCTCCCATGCGCGCTTTGGCTGGTCTATG
CCTCTAGCTCCACACAACACACTAG
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Coding sequence (CDS) from alignment at scaffold_22:430055..430429+

>mRNA_8010 ID=mRNA_8010|Name=jgi.p|Nanoce1779_2|182500|organism=Nannochloropsis oceanica|type=CDS|length=243bp|location=Sequence derived from alignment at scaffold_22:430055..430429+ (Nannochloropsis oceanica)
ATGTTTTCGGGATGTCAGATAGTATATTTGTTTTTCATGCTTCACTTCGT
ACGCCTTGTTCCTTGCCATCGTGGGGGACGACTCTATTTTTTGTGGAGTG
TATCATGGCATGTCAAATCATCACCCAACCCCACCACGCATCTCCTTGCA
CTACACGCCCGTGGGATAAGCTCGATAGGTTCTGGTTTTGGCCACTTAGA
CGCCGTCCTACAAGACCTTGAAAATACGAAATTCGAGCTGTGA
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Synonyms
Publications