jgi.p|Nanoce1779_2|601200, mRNA_8228 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601200
Unique NamemRNA_8228
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length538
Alignment locationscaffold_23:113252..114257 -

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Properties
Property NameValue
TranscriptId601286
TrackFilteredModels2
ProteinId601200
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:113252..114257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601200gene_8228Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601200mRNA_8228-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8228CDS_8228Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8228 ID=mRNA_8228|Name=jgi.p|Nanoce1779_2|601200|organism=Nannochloropsis oceanica|type=mRNA|length=538bp
GCAGTACTGTGCTTTCCCAACCCCATCCCTGCAGGCAAAGACACAGAAAG
AGCCAGAACAGCAGCCTTGCATCGTCATCAACCACGCGTCCTTTTCTTGC
AGGGCTTTGGCGGGCTTTGCATTCGTCTGCTGCCTTCCTTCATTTCCCAT
CCTCCGTTCTTCCCCTCGCTTTGAACCTTTCACTCGACAGTCACCTCTCT
GCCCACTTCCCCCAACAGCAATATGGCTCTCCGCCGCCTCTTCCTCTCTG
CCTCCGCAATGCGCCCCCTCGCGATCTCGGTGGCGGACGCGCGTGTGTCC
CAAGTCATGCTCATGTCGGGCAAGTCTGGCTTTGACGACAAGGGCCATGC
CATCGAGGCGGCCTATATCAGGCAAGCCGAGGAGAAGGTGTTGAAGAGGC
TGCTCAAGAAGCTCAAGGAGGAGGAGAAACCCCCCTGCGATGTCACGGCC
AAGAAGGAGCTCGAGAAGATCCTGGGTTCTATCCCTGAGGACGTGGCGAA
GAAGCTGATGGACTGGAAGAAGACCGACCACTAGAGCC
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protein sequence of jgi.p|Nanoce1779_2|601200

>mRNA_8228-protein ID=mRNA_8228-protein|Name=jgi.p|Nanoce1779_2|601200|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MALRRLFLSASAMRPLAISVADARVSQVMLMSGKSGFDDKGHAIEAAYIR
QAEEKVLKRLLKKLKEEEKPPCDVTAKKELEKILGSIPEDVAKKLMDWKK
TDH*
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mRNA from alignment at scaffold_23:113252..114257-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8228 ID=mRNA_8228|Name=jgi.p|Nanoce1779_2|601200|organism=Nannochloropsis oceanica|type=mRNA|length=1006bp|location=Sequence derived from alignment at scaffold_23:113252..114257- (Nannochloropsis oceanica)
GCAGTACTGTGCTTTCCCAACCCCATCCCTGCAGGCAAAGACACAGAAAG
AGCCAGAACAGCAGCCTTGCATCGTCATCAACCACGCGTCCTTTTCTTGC
AGGGCTTTGGCGGGCTTTGCATTCGTCTGCTGCCTTCCTTCATTTCCCAT
CCTCCGTTCTTCCCCTCGCTTTGAACCTTTCACTCGACAGTCACCTCTCT
GCCCACTTCCCCCAACAGCAATATGGCTCTCCGCCGCCTCTTCCTCTCTG
CCTCCGCAATGCGCCCCCTCGCGATCTCGGTGGCGGACGCGCGTGTGTCC
CAAGTCATGCTCATGTCGGGCAAGTCTGGCTTTGACGACAAGGGCCATGC
CATCGAGGCGGCCTATATCAGGGTAAGCGAGGAAACAGATGGAATGGAAT
GATGACACCGGAGAGGATGATGGTGTTTGGCATCTCGTGGTTGAGAAAAA
TGTAGGAAGACTGGTGCTTGGATACCAGTGGGGCATACGGCATGTCTCAT
CCCTCCCTCCGTCCCCTCCTCCCGTCCTTCCTCCCTCCGTCCTCATCCGA
CAGCAAGCCGAGGAGAAGGTGTTGAAGAGGCTGCTCAAGAAGCTCAAGGA
GGAGGAGAAACCCCCCTGCGATGTCACGGCCAAGAAGGAGCTCGAGAAGG
TATTAGCGGTACCCTCCTATCGTCCCTCCCTCTTTCTCTCCCTCCCTCCC
TCGCGCTCTGCTTTTGCTCCCCCGAGGCGCTTCCCCTGGAGTCGGAAGAC
TTTTTCTCCCTCCTTACCTCCATCCTTATCTTCCTCCCTCCTTTACTCTC
TCCTCGCCTATCCTTGAGTCCCGCGTGCCTCGGCCATTATTCTGACCTCC
CTGTTGCCCTCCTTCCAAAGCATAAGAACTTGGATTCCTTGTTTCATCCT
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGATCCTGGGTTCTAT
CCCTGAGGACGTGGCGAAGAAGCTGATGGACTGGAAGAAGACCGACCACT
AGAGCC
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Coding sequence (CDS) from alignment at scaffold_23:113252..114257-

>mRNA_8228 ID=mRNA_8228|Name=jgi.p|Nanoce1779_2|601200|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at scaffold_23:113252..114257- (Nannochloropsis oceanica)
ATCCTGGGTTCTATCCCTGAGGACGTGGCGAAGAAGCTGATGGACTGGAA
GAAGACCGACCACTAGCAAGCCGAGGAGAAGGTGTTGAAGAGGCTGCTCA
AGAAGCTCAAGGAGGAGGAGAAACCCCCCTGCGATGTCACGGCCAAGAAG
GAGCTCGAGAAGATGGCTCTCCGCCGCCTCTTCCTCTCTGCCTCCGCAAT
GCGCCCCCTCGCGATCTCGGTGGCGGACGCGCGTGTGTCCCAAGTCATGC
TCATGTCGGGCAAGTCTGGCTTTGACGACAAGGGCCATGCCATCGAGGCG
GCCTATATCAGGATCCTGGGTTCTATCCCTGAGGACGTGGCGAAGAAGCT
GATGGACTGGAAGAAGACCGACCACTAGCAAGCCGAGGAGAAGGTGTTGA
AGAGGCTGCTCAAGAAGCTCAAGGAGGAGGAGAAACCCCCCTGCGATGTC
ACGGCCAAGAAGGAGCTCGAGAAGATGGCTCTCCGCCGCCTCTTCCTCTC
TGCCTCCGCAATGCGCCCCCTCGCGATCTCGGTGGCGGACGCGCGTGTGT
CCCAAGTCATGCTCATGTCGGGCAAGTCTGGCTTTGACGACAAGGGCCAT
GCCATCGAGGCGGCCTATATCAGGATCCTGGGTTCTATCCCTGAGGACGT
GGCGAAGAAGCTGATGGACTGGAAGAAGACCGACCACTAGCAAGCCGAGG
AGAAGGTGTTGAAGAGGCTGCTCAAGAAGCTCAAGGAGGAGGAGAAACCC
CCCTGCGATGTCACGGCCAAGAAGGAGCTCGAGAAGATGGCTCTCCGCCG
CCTCTTCCTCTCTGCCTCCGCAATGCGCCCCCTCGCGATCTCGGTGGCGG
ACGCGCGTGTGTCCCAAGTCATGCTCATGTCGGGCAAGTCTGGCTTTGAC
GACAAGGGCCATGCCATCGAGGCGGCCTATATCAGG
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Synonyms
Publications