jgi.p|Nanoce1779_2|195606, mRNA_8420 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|195606
Unique NamemRNA_8420
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1340
Alignment locationscaffold_24:219432..221213 -

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Properties
Property NameValue
TranscriptId195692
TrackFilteredModels2
ProteinId195606
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:219432..221213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|195606gene_8420Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|195606mRNA_8420-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8420CDS_8420Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8420 ID=mRNA_8420|Name=jgi.p|Nanoce1779_2|195606|organism=Nannochloropsis oceanica|type=mRNA|length=1340bp
GGCATGCGTATTTGGGCATTGGCTTCAGGCTAGTCCGGCCAGTTGTTACA
TGTTGGACAAAAAATCCTACACTACCATGATGGTAGATTGCCAGAAATGT
CCCCGTCAACCGAGACTGCGAAAGCCACACGACCGGATGTGGCCGCGCGG
AAGGAGCTGCAGAAAACACTGGAGATGCAATGTGTAAAGTGTTGTCTGTC
AAAGCGACTGGCGCCAGGTTGGCATCCGACAGTGAAAACTGTCCTGCTTG
AAACCCTGGAGGGACAGATTCGGAGCACGTCCGAGATTGTCGTACGAGGA
TCACTCCTGGTGAATGAGGTGTTGCATTGGTACCTCAGTCGTCCAGTTGA
GGAACAGGTGGCTCTTCCGAAGCTGGATCAAAGCTTTGTCACCGCCTGCT
TCACTCGTGGGCTGGATGTTCGACCCGGCCGAGCGTGGAACGAGGGATAC
CGCGGGGTCATCGAGGGGGTGTTTCAGGATAAATTTACCAATTATCCGAT
CATCCACCGTAGCCCGGGCGACTACCAATGCATCACCATGGCGGCACAGC
TATACGTCACAAATATAGCAGCGTCGACATGGACCTCGTTTGTGGGGAGA
CAACTCGATTACATGCGATTCTGGCTAAGAGAGCATGGATTCGAGTCCCC
GTACGTTTCGGCAAAGCGAGTCCAATGCCTCATCAATGGCTGGATTGGAC
CACGCACCGACATCCAGGCGGGCGCTGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGGGGAGGAGGAGGAGGAGGAAGAGGGGGAAGGGCAGGTGGTGGAGG
GGCAGGTGGTGGTGGCCCTATGTGGCAGATCCCGGATGATGTCCAGGCCT
TTATCAACGAGGAACGGCGGCTTCTTAGGCTGGAGGGTTCCGCCCGTTTG
GTCGTGAATGAAAAGACCCCAGTGGAAGGGCTCCTCCTCCCGTATCTGTA
CCACATTTTGTACCAGTACCACCAAAAGCATCTGGCGGTACGGGCGGTAC
AAGAAGGGATGAGGGACAACCCTGGGTTGCAGGCCGAGCACGGAGGGAAT
CCTGGCTATCGGGCGTTAACTATCGCTCCAATCTGCAGTATCAAGCGTGA
TTTCATGACGCTCGATACCAGAGCTCTTGATGATCTGCTTAAGAACGTGG
TGCGGCGCAGACCCACCGCGATGACCATGGAGGCATGGAGCGAAGCACGC
CCCGATTGGTTGAGGCGACCACTCCTCCTCAGATGTCTTACCCGAATCTG
GTGACTGCCCTCCGGTATAGGGTGATAGGCACCGGGTGGTCCCTGCCGGC
GCTTGAACCCCATGGGGCACGCCGCCGTCCAGTGATTCCC
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protein sequence of jgi.p|Nanoce1779_2|195606

>mRNA_8420-protein ID=mRNA_8420-protein|Name=jgi.p|Nanoce1779_2|195606|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MSPSTETAKATRPDVAARKELQKTLEMQCVKCCLSKRLAPGWHPTVKTVL
LETLEGQIRSTSEIVVRGSLLVNEVLHWYLSRPVEEQVALPKLDQSFVTA
CFTRGLDVRPGRAWNEGYRGVIEGVFQDKFTNYPIIHRSPGDYQCITMAA
QLYVTNIAASTWTSFVGRQLDYMRFWLREHGFESPYVSAKRVQCLINGWI
GPRTDIQAGAGGGGGGGGGGGGGGGGRGGRAGGGGAGGGGPMWQIPDDVQ
AFINEERRLLRLEGSARLVVNEKTPVEGLLLPYLYHILYQYHQKHLAVRA
VQEGMRDNPGLQAEHGGNPGYRALTIAPICSIKRDFMTLDTRALDDLLKN
VVRRRPTAMTMEAWSEARPDWLRRPLLLRCLTRIW*
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mRNA from alignment at scaffold_24:219432..221213-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8420 ID=mRNA_8420|Name=jgi.p|Nanoce1779_2|195606|organism=Nannochloropsis oceanica|type=mRNA|length=1782bp|location=Sequence derived from alignment at scaffold_24:219432..221213- (Nannochloropsis oceanica)
GGCATGCGTATTTGGGCATTGGCTTCAGGCTAGTCCGGCCAGTTGTTACA
TGTTGGACAAAAAATCCTACACTACCATGATGGTAGATTGCCAGGTGCAG
TAGAATGTTTTCCCCTCCTCCCAAGAACCGAGGCAAGCGTGCGTGGCACG
CGGATGTTTTGTTTACTGCCGCCGCACCCACCTATCCCCCCCCCCCTCCG
TTCCCTCCTTCCTACCCACCCATGCGCCACACACCACACACCCACAGCTG
ATTCCCCCGCGCGTCGGCCTGGAGGTGAACGACAGTATCGTGGCCACACC
AAAAGGAGGGGAGGGCGCCGAGGCAGGCGTGCGTGGCACGTAGCTGTTTT
GTTTACTGCCGCCGCACCCACCTATCCCCCCCCCCCCCCCTTCCATTCCC
TCCTTCCTGCCCACCCACTCACCGCGACTGCAACTTACATGTTGCCATTA
TGCCAAGGACAACACCACACCCTCCATTAGAGCCGTCAAACTTCCTCTCT
ATTCCCCCCCTTCCCCCCCCCTTCCTCAAAATACAGAAATGTCCCCGTCA
ACCGAGACTGCGAAAGCCACACGACCGGATGTGGCCGCGCGGAAGGAGCT
GCAGAAAACACTGGAGATGCAATGTGTAAAGTGTTGTCTGTCAAAGCGAC
TGGCGCCAGGTTGGCATCCGACAGTGAAAACTGTCCTGCTTGAAACCCTG
GAGGGACAGATTCGGAGCACGTCCGAGATTGTCGTACGAGGATCACTCCT
GGTGAATGAGGTGTTGCATTGGTACCTCAGTCGTCCAGTTGAGGAACAGG
TGGCTCTTCCGAAGCTGGATCAAAGCTTTGTCACCGCCTGCTTCACTCGT
GGGCTGGATGTTCGACCCGGCCGAGCGTGGAACGAGGGATACCGCGGGGT
CATCGAGGGGGTGTTTCAGGATAAATTTACCAATTATCCGATCATCCACC
GTAGCCCGGGCGACTACCAATGCATCACCATGGCGGCACAGCTATACGTC
ACAAATATAGCAGCGTCGACATGGACCTCGTTTGTGGGGAGACAACTCGA
TTACATGCGATTCTGGCTAAGAGAGCATGGATTCGAGTCCCCGTACGTTT
CGGCAAAGCGAGTCCAATGCCTCATCAATGGCTGGATTGGACCACGCACC
GACATCCAGGCGGGCGCTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGG
AGGAGGAGGAGGAGGAAGAGGGGGAAGGGCAGGTGGTGGAGGGGCAGGTG
GTGGTGGCCCTATGTGGCAGATCCCGGATGATGTCCAGGCCTTTATCAAC
GAGGAACGGCGGCTTCTTAGGCTGGAGGGTTCCGCCCGTTTGGTCGTGAA
TGAAAAGACCCCAGTGGAAGGGCTCCTCCTCCCGTATCTGTACCACATTT
TGTACCAGTACCACCAAAAGCATCTGGCGGTACGGGCGGTACAAGAAGGG
ATGAGGGACAACCCTGGGTTGCAGGCCGAGCACGGAGGGAATCCTGGCTA
TCGGGCGTTAACTATCGCTCCAATCTGCAGTATCAAGCGTGATTTCATGA
CGCTCGATACCAGAGCTCTTGATGATCTGCTTAAGAACGTGGTGCGGCGC
AGACCCACCGCGATGACCATGGAGGCATGGAGCGAAGCACGCCCCGATTG
GTTGAGGCGACCACTCCTCCTCAGATGTCTTACCCGAATCTGGTGACTGC
CCTCCGGTATAGGGTGATAGGCACCGGGTGGTCCCTGCCGGCGCTTGAAC
CCCATGGGGCACGCCGCCGTCCAGTGATTCCC
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Coding sequence (CDS) from alignment at scaffold_24:219432..221213-

>mRNA_8420 ID=mRNA_8420|Name=jgi.p|Nanoce1779_2|195606|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_24:219432..221213- (Nannochloropsis oceanica)
ATGTCCCCGTCAACCGAGACTGCGAAAGCCACACGACCGGATGTGGCCGC
GCGGAAGGAGCTGCAGAAAACACTGGAGATGCAATGTGTAAAGTGTTGTC
TGTCAAAGCGACTGGCGCCAGGTTGGCATCCGACAGTGAAAACTGTCCTG
CTTGAAACCCTGGAGGGACAGATTCGGAGCACGTCCGAGATTGTCGTACG
AGGATCACTCCTGGTGAATGAGGTGTTGCATTGGTACCTCAGTCGTCCAG
TTGAGGAACAGGTGGCTCTTCCGAAGCTGGATCAAAGCTTTGTCACCGCC
TGCTTCACTCGTGGGCTGGATGTTCGACCCGGCCGAGCGTGGAACGAGGG
ATACCGCGGGGTCATCGAGGGGGTGTTTCAGGATAAATTTACCAATTATC
CGATCATCCACCGTAGCCCGGGCGACTACCAATGCATCACCATGGCGGCA
CAGCTATACGTCACAAATATAGCAGCGTCGACATGGACCTCGTTTGTGGG
GAGACAACTCGATTACATGCGATTCTGGCTAAGAGAGCATGGATTCGAGT
CCCCGTACGTTTCGGCAAAGCGAGTCCAATGCCTCATCAATGGCTGGATT
GGACCACGCACCGACATCCAGGCGGGCGCTGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGGGGAGGAGGAGGAGGAGGAAGAGGGGGAAGGGCAGGTGGTG
GAGGGGCAGGTGGTGGTGGCCCTATGTGGCAGATCCCGGATGATGTCCAG
GCCTTTATCAACGAGGAACGGCGGCTTCTTAGGCTGGAGGGTTCCGCCCG
TTTGGTCGTGAATGAAAAGACCCCAGTGGAAGGGCTCCTCCTCCCGTATC
TGTACCACATTTTGTACCAGTACCACCAAAAGCATCTGGCGGTACGGGCG
GTACAAGAAGGGATGAGGGACAACCCTGGGTTGCAGGCCGAGCACGGAGG
GAATCCTGGCTATCGGGCGTTAACTATCGCTCCAATCTGCAGTATCAAGC
GTGATTTCATGACGCTCGATACCAGAGCTCTTGATGATCTGCTTAAGAAC
GTGGTGCGGCGCAGACCCACCGCGATGACCATGGAGGCATGGAGCGAAGC
ACGCCCCGATTGGTTGAGGCGACCACTCCTCCTCAGATGTCTTACCCGAA
TCTGGTGA
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Synonyms
Publications