jgi.p|Nanoce1779_2|603050, mRNA_8546 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603050
Unique Name	mRNA_8546
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1519
Alignment location	scaffold_26:167734..169615 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	603136
Track	FilteredModels2
ProteinId	603050

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:167734..169615 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603050	gene_8546	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603050	mRNA_8546-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8546	CDS_8546	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:167734..169615-
coding sequence from alignment at scaffold_26:167734..169615-

mRNA sequence

>mRNA_8546 ID=mRNA_8546|Name=jgi.p|Nanoce1779_2|603050|organism=Nannochloropsis oceanica|type=mRNA|length=1519bp
ACAGGGCACGCCACTAATAAATGGCCTCTTTCATCCCGGACGGGGCCGAA
GACGCCCTCCTAACCCTCGCCACCCTCGTATACCCTTTCCCCTTGCCTAA
GAGCAAGAAAACCGGCGCCGCATTCGCCACGGCCTTCTCGGCCACGGGCA
CTCCGGCCGCCACCACGACAACCATGGAAAGCATCGACAAATTGCGCGAG
GAGTTTGTGGACGAGGTTTGCAAGCCCAAACCTAGCATGGCGGCCGTGAG
TAGTGCGGCAGATCGATATGCCCCACAGTTGAATAGGATAATTCAGTCGA
TTGACGCAAGTCACGACCCCGTCCGCCTCACAAAACGCATGCAGTTCCAA
TGGACGTCCGTCCTTAACGCCCGCAACTCCCCCCAAGAGTACAAAACCCA
AGAAGTCTTCATTTTCGAGATGGCCATGCTCCTCTCCTCCAAGGCTCTCG
CCCTGTCCAACCAAGCCTCTCTCCTCCTCTCCTCCTCGGATCCATCTTGC
TCCGACAACCACTACGCGGACGCCGCCATTTTGCTCAAATTAGCCGGGGG
GGTCTACATCGCCCTGGCCCACGATTTTCTCCCCCGCTGGAAAGAAACGC
CCGAGAACGCCTCAGGCCGCCATCCAGAGACTTCGGAAGGGGTGGCCATG
GCCCTCGTAGACCTTGTCTCCGCCCAGGCCCAAACCATGTACCTAGCCAA
GGGTCTTAATGTTGGGAACGTACCTGAAGGGACGCTCGCGAAGCTCGCCG
TGACGGTGGTGGAGAGGTTCGAAAAGTGTGTGAGCAATTTTAGGGCACGT
GCCGGAACTCATTTTGGCAGGCTGGATCCGGAATTTCTCGGGTATTTGAC
TTTCATGCCCGCTCTCTTTCGCGCCCTCGCCTACCGTTTCCTAGCCGTGG
CTTACTGGAAGAAGAGCGATCACGGTACGGCGATCGGCCTCATTCTCCAA
GCACAGGCTTTGCTGAAGCCCCGCGCAGATGGAGTATCTTCAGGTTTACC
TTCTATGGACGACTCTCGCTATTTGTCTAAATTTAAGCCTCAGGTGGAGA
TATTGAGGAAGGAGGTGAACGGTATGCTCACCTCTTGGAATCAAGACAAT
AACATGATTTATTTTGCGGCGGTTGTGGATGCCATGAGCCTTCCACCTTT
GCCGGCAGGAGCGAATATGGTCCAACTAACGAAGTATGATTATATGTCGA
GCTCGCCGCCCATTTTGTTCTCGGAACCCGCTGAAGCCAAGACGTCATAA
TAGGGATGAAGGGGAGGGAGAGATGATGTAGATTAGGGTGTATAATTGCT
TGATAAGTAAAGTAAGAAATGTATGCGTTCATCTTGGTTCTTGTTTGATT
GATTTTGCTTTGTTAAACTTGATCATGCGGGCCATCTTGACGTTTTGTAA
TTGTCCATCCTGTCGACCTTATATCTCTTTTGGGGAACGTAGAGATCAGG
AAAAAGGTTTTTTGGGTCTACATTGATTGATCACTCTCGATCATTTTCAC
GTGTTTAACGTGACATATT

protein sequence of jgi.p|Nanoce1779_2|603050

>mRNA_8546-protein ID=mRNA_8546-protein|Name=jgi.p|Nanoce1779_2|603050|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MASFIPDGAEDALLTLATLVYPFPLPKSKKTGAAFATAFSATGTPAATTT
TMESIDKLREEFVDEVCKPKPSMAAVSSAADRYAPQLNRIIQSIDASHDP
VRLTKRMQFQWTSVLNARNSPQEYKTQEVFIFEMAMLLSSKALALSNQAS
LLLSSSDPSCSDNHYADAAILLKLAGGVYIALAHDFLPRWKETPENASGR
HPETSEGVAMALVDLVSAQAQTMYLAKGLNVGNVPEGTLAKLAVTVVERF
EKCVSNFRARAGTHFGRLDPEFLGYLTFMPALFRALAYRFLAVAYWKKSD
HGTAIGLILQAQALLKPRADGVSSGLPSMDDSRYLSKFKPQVEILRKEVN
GMLTSWNQDNNMIYFAAVVDAMSLPPLPAGANMVQLTKYDYMSSSPPILF
SEPAEAKTS*

mRNA from alignment at scaffold_26:167734..169615-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8546 ID=mRNA_8546|Name=jgi.p|Nanoce1779_2|603050|organism=Nannochloropsis oceanica|type=mRNA|length=1882bp|location=Sequence derived from alignment at scaffold_26:167734..169615- (Nannochloropsis oceanica)
ACAGGGCACGCCACTAATAAATGGCCTCTTTCATCCCGGACGGGGCCGAA
GACGCCCTCCTAACCCTCGCCACCCTCGTATACCCTTTCCCCTTGCCTAA
GAGCAAGAAAACCGGCGCCGCATTCGCCACGGCCTTCTCGGCCACGGGCA
CTCCGGCCGCCACCACGACAACCATGGAAAGCATCGACAAATTGCGCGAG
GAGTTTGTGGACGAGGTTTGCAAGCCCAAACCTAGCATGGCGGCCGTGAG
TAGTGCGGCAGATCGATATGCCCCACAGTTGAATAGGATAATTCAGTCGA
TTGACGCAAGTGTGAGTAAATGTTATAACTGGTGGTGTCTGGGGGCTCGA
CCGCAGGGAAAGGAGGGAGGAGGGATGTGGGAGGGATTGGGCGGAGGAAC
AGAGGAAAACTCATACCTTTTTGCTGAACCTCCTCTTTTTCACCTCCCTC
TCTCCCTCTCTCCCTCTCTCCCTCCCTCCCTCTCTCCCTCCTTTCCCTTC
TTGTACTTCACCAGCACGACCCCGTCCGCCTCACAAAACGCATGCAGTTC
CAATGGACGTCCGTCCTTAACGCCCGCAACTCCCCCCAAGAGTACAAAAC
CCAAGAAGTCTTCATTTTCGAGATGGCCATGCTCCTCTCCTCCAAGGCTC
TCGCCCTGTCCAACCAAGCCTCTCTCCTCCTCTCCTCCTCGGATCCATCT
TGCTCCGACAACCACTACGCGGACGCCGCCATTTTGCTCAAATTAGCCGG
GGGGGTCTACATCGCCCTGGCCCACGATTTTCTCCCCCGCTGGAAAGAAA
CGCCCGAGAACGCCTCAGGCCGCCATCCAGAGACTTCGGAAGGGGTGGCC
ATGGCCCTCGTAGACCTTGTCTCCGCCCAGGCCCAAACCATGTACCTAGC
CAAGGGTCTTAATGTTGGGAACGTACCTGAAGGGACGCTCGCGAAGCTCG
CCGTGACGGTGGTGGAGAGGTTCGAAAAGTGTGTGAGCAATTTTAGGGCA
CGTGCCGGAACTCATTTTGGCAGGCTGGATCCGGAATTTCTCGGGTATTT
GACTTTCATGCCGTGAGTAGGAGAGAGTGAGGGATGGAGGAGAGGGTTTG
TATTTTGTTCATCTGAAACCTGCAGCCGTGTTGTTCGATTTTCCCTTACC
TCCCTCAGAAGTCCACCACTCACCACCTTCTCAACTTTTCATGCCTCCCT
TCCTGCTTCCCTCCCTACACAGCGCTCTCTTTCGCGCCCTCGCCTACCGT
TTCCTAGCCGTGGCTTACTGGAAGAAGAGCGATCACGGTACGGCGATCGG
CCTCATTCTCCAAGCACAGGCTTTGCTGAAGCCCCGCGCAGATGGAGTAT
CTTCAGGTTTACCTTCTATGGACGACTCTCGCTATTTGTCTAAATTTAAG
CCTCAGGTGGAGATATTGAGGAAGGAGGTGAACGGTATGCTCACCTCTTG
GAATCAAGACAATAACATGATTTATTTTGCGGCGGTTGTGGATGCCATGA
GCCTTCCACCTTTGCCGGCAGGAGCGAATATGGTCCAACTAACGAAGTAT
GATTATATGTCGAGCTCGCCGCCCATTTTGTTCTCGGAACCCGCTGAAGC
CAAGACGTCATAATAGGGATGAAGGGGAGGGAGAGATGATGTAGATTAGG
GTGTATAATTGCTTGATAAGTAAAGTAAGAAATGTATGCGTTCATCTTGG
TTCTTGTTTGATTGATTTTGCTTTGTTAAACTTGATCATGCGGGCCATCT
TGACGTTTTGTAATTGTCCATCCTGTCGACCTTATATCTCTTTTGGGGAA
CGTAGAGATCAGGAAAAAGGTTTTTTGGGTCTACATTGATTGATCACTCT
CGATCATTTTCACGTGTTTAACGTGACATATT

Coding sequence (CDS) from alignment at scaffold_26:167734..169615-

>mRNA_8546 ID=mRNA_8546|Name=jgi.p|Nanoce1779_2|603050|organism=Nannochloropsis oceanica|type=CDS|length=3690bp|location=Sequence derived from alignment at scaffold_26:167734..169615- (Nannochloropsis oceanica)
CGCTCTCTTTCGCGCCCTCGCCTACCGTTTCCTAGCCGTGGCTTACTGGA
AGAAGAGCGATCACGGTACGGCGATCGGCCTCATTCTCCAAGCACAGGCT
TTGCTGAAGCCCCGCGCAGATGGAGTATCTTCAGGTTTACCTTCTATGGA
CGACTCTCGCTATTTGTCTAAATTTAAGCCTCAGGTGGAGATATTGAGGA
AGGAGGTGAACGGTATGCTCACCTCTTGGAATCAAGACAATAACATGATT
TATTTTGCGGCGGTTGTGGATGCCATGAGCCTTCCACCTTTGCCGGCAGG
AGCGAATATGGTCCAACTAACGAAGTATGATTATATGTCGAGCTCGCCGC
CCATTTTGTTCTCGGAACCCGCTGAAGCCAAGACGTCATAACACGACCCC
GTCCGCCTCACAAAACGCATGCAGTTCCAATGGACGTCCGTCCTTAACGC
CCGCAACTCCCCCCAAGAGTACAAAACCCAAGAAGTCTTCATTTTCGAGA
TGGCCATGCTCCTCTCCTCCAAGGCTCTCGCCCTGTCCAACCAAGCCTCT
CTCCTCCTCTCCTCCTCGGATCCATCTTGCTCCGACAACCACTACGCGGA
CGCCGCCATTTTGCTCAAATTAGCCGGGGGGGTCTACATCGCCCTGGCCC
ACGATTTTCTCCCCCGCTGGAAAGAAACGCCCGAGAACGCCTCAGGCCGC
CATCCAGAGACTTCGGAAGGGGTGGCCATGGCCCTCGTAGACCTTGTCTC
CGCCCAGGCCCAAACCATGTACCTAGCCAAGGGTCTTAATGTTGGGAACG
TACCTGAAGGGACGCTCGCGAAGCTCGCCGTGACGGTGGTGGAGAGGTTC
GAAAAGTGTGTGAGCAATTTTAGGGCACGTGCCGGAACTCATTTTGGCAG
GCTGGATCCGGAATTTCTCGGGTATTTGACTTTCATGCCATGGCCTCTTT
CATCCCGGACGGGGCCGAAGACGCCCTCCTAACCCTCGCCACCCTCGTAT
ACCCTTTCCCCTTGCCTAAGAGCAAGAAAACCGGCGCCGCATTCGCCACG
GCCTTCTCGGCCACGGGCACTCCGGCCGCCACCACGACAACCATGGAAAG
CATCGACAAATTGCGCGAGGAGTTTGTGGACGAGGTTTGCAAGCCCAAAC
CTAGCATGGCGGCCGTGAGTAGTGCGGCAGATCGATATGCCCCACAGTTG
AATAGGATAATTCAGTCGATTGACGCAAGTCGCTCTCTTTCGCGCCCTCG
CCTACCGTTTCCTAGCCGTGGCTTACTGGAAGAAGAGCGATCACGGTACG
GCGATCGGCCTCATTCTCCAAGCACAGGCTTTGCTGAAGCCCCGCGCAGA
TGGAGTATCTTCAGGTTTACCTTCTATGGACGACTCTCGCTATTTGTCTA
AATTTAAGCCTCAGGTGGAGATATTGAGGAAGGAGGTGAACGGTATGCTC
ACCTCTTGGAATCAAGACAATAACATGATTTATTTTGCGGCGGTTGTGGA
TGCCATGAGCCTTCCACCTTTGCCGGCAGGAGCGAATATGGTCCAACTAA
CGAAGTATGATTATATGTCGAGCTCGCCGCCCATTTTGTTCTCGGAACCC
GCTGAAGCCAAGACGTCATAACACGACCCCGTCCGCCTCACAAAACGCAT
GCAGTTCCAATGGACGTCCGTCCTTAACGCCCGCAACTCCCCCCAAGAGT
ACAAAACCCAAGAAGTCTTCATTTTCGAGATGGCCATGCTCCTCTCCTCC
AAGGCTCTCGCCCTGTCCAACCAAGCCTCTCTCCTCCTCTCCTCCTCGGA
TCCATCTTGCTCCGACAACCACTACGCGGACGCCGCCATTTTGCTCAAAT
TAGCCGGGGGGGTCTACATCGCCCTGGCCCACGATTTTCTCCCCCGCTGG
AAAGAAACGCCCGAGAACGCCTCAGGCCGCCATCCAGAGACTTCGGAAGG
GGTGGCCATGGCCCTCGTAGACCTTGTCTCCGCCCAGGCCCAAACCATGT
ACCTAGCCAAGGGTCTTAATGTTGGGAACGTACCTGAAGGGACGCTCGCG
AAGCTCGCCGTGACGGTGGTGGAGAGGTTCGAAAAGTGTGTGAGCAATTT
TAGGGCACGTGCCGGAACTCATTTTGGCAGGCTGGATCCGGAATTTCTCG
GGTATTTGACTTTCATGCCATGGCCTCTTTCATCCCGGACGGGGCCGAAG
ACGCCCTCCTAACCCTCGCCACCCTCGTATACCCTTTCCCCTTGCCTAAG
AGCAAGAAAACCGGCGCCGCATTCGCCACGGCCTTCTCGGCCACGGGCAC
TCCGGCCGCCACCACGACAACCATGGAAAGCATCGACAAATTGCGCGAGG
AGTTTGTGGACGAGGTTTGCAAGCCCAAACCTAGCATGGCGGCCGTGAGT
AGTGCGGCAGATCGATATGCCCCACAGTTGAATAGGATAATTCAGTCGAT
TGACGCAAGTCGCTCTCTTTCGCGCCCTCGCCTACCGTTTCCTAGCCGTG
GCTTACTGGAAGAAGAGCGATCACGGTACGGCGATCGGCCTCATTCTCCA
AGCACAGGCTTTGCTGAAGCCCCGCGCAGATGGAGTATCTTCAGGTTTAC
CTTCTATGGACGACTCTCGCTATTTGTCTAAATTTAAGCCTCAGGTGGAG
ATATTGAGGAAGGAGGTGAACGGTATGCTCACCTCTTGGAATCAAGACAA
TAACATGATTTATTTTGCGGCGGTTGTGGATGCCATGAGCCTTCCACCTT
TGCCGGCAGGAGCGAATATGGTCCAACTAACGAAGTATGATTATATGTCG
AGCTCGCCGCCCATTTTGTTCTCGGAACCCGCTGAAGCCAAGACGTCATA
ACACGACCCCGTCCGCCTCACAAAACGCATGCAGTTCCAATGGACGTCCG
TCCTTAACGCCCGCAACTCCCCCCAAGAGTACAAAACCCAAGAAGTCTTC
ATTTTCGAGATGGCCATGCTCCTCTCCTCCAAGGCTCTCGCCCTGTCCAA
CCAAGCCTCTCTCCTCCTCTCCTCCTCGGATCCATCTTGCTCCGACAACC
ACTACGCGGACGCCGCCATTTTGCTCAAATTAGCCGGGGGGGTCTACATC
GCCCTGGCCCACGATTTTCTCCCCCGCTGGAAAGAAACGCCCGAGAACGC
CTCAGGCCGCCATCCAGAGACTTCGGAAGGGGTGGCCATGGCCCTCGTAG
ACCTTGTCTCCGCCCAGGCCCAAACCATGTACCTAGCCAAGGGTCTTAAT
GTTGGGAACGTACCTGAAGGGACGCTCGCGAAGCTCGCCGTGACGGTGGT
GGAGAGGTTCGAAAAGTGTGTGAGCAATTTTAGGGCACGTGCCGGAACTC
ATTTTGGCAGGCTGGATCCGGAATTTCTCGGGTATTTGACTTTCATGCCA
TGGCCTCTTTCATCCCGGACGGGGCCGAAGACGCCCTCCTAACCCTCGCC
ACCCTCGTATACCCTTTCCCCTTGCCTAAGAGCAAGAAAACCGGCGCCGC
ATTCGCCACGGCCTTCTCGGCCACGGGCACTCCGGCCGCCACCACGACAA
CCATGGAAAGCATCGACAAATTGCGCGAGGAGTTTGTGGACGAGGTTTGC
AAGCCCAAACCTAGCATGGCGGCCGTGAGTAGTGCGGCAGATCGATATGC
CCCACAGTTGAATAGGATAATTCAGTCGATTGACGCAAGT

Synonyms

Publications