jgi.p|Nanoce1779_2|220151, mRNA_8793 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|220151
Unique NamemRNA_8793
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length814
Alignment locationscaffold_28:173027..173840 +

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Properties
Property NameValue
TranscriptId220237
TrackFilteredModels2
ProteinId220151
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:173027..173840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|220151gene_8793Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|220151mRNA_8793-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8793CDS_8793Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8793 ID=mRNA_8793|Name=jgi.p|Nanoce1779_2|220151|organism=Nannochloropsis oceanica|type=mRNA|length=814bp
CTATGATATGAAGACACTTGGCCAGGCCGGCGGTGAAGGAGGGAGGAGGG
AGGGAGGGAGGGATGGGGGGAGGAGGGGTCAGACAGCAGGCATCAATTCG
ATGTGAGACAAGGTGGAGGGCGCCAGTGAAGCTCAGCGTGGTGGCGATGC
TGTCGGGGGGAGGGAGGGAGGGAGGCAGGGAGGAAGAGAGGCAAGGGAGG
GGGGGAGTGAGGTTGTATGTCACGGGTTTAGATTCGGAATTGTTGGCCTG
CGCGGTGTCGGGAGGAGGGAGAAGGAAGGAGGGAGGAAGCGGAGGAGAGG
GGAGCTACGGGCTGCAGCCCCTTACCAAGCAAAAGCGACGGATGCAGAGA
GAAGAGGAAAAAGAAAAAGAAGAAAAGAGGGGGAAAGAAAAAGCACGATT
TGAACAAGGGAAGGAGGAAGGGATAGAGACGAGGCGTCCACAATTCCACA
CTTCGAGGGAGGCGGGAAGGGAGGGAGGGAGGGCAAGGTGCTGCTGGTAC
AGGGCCCTGCCTCTCATCCTAGCGCTAGCCGGCTCCATGAGGCCTTCACG
GGCTCGGTCCGTGCGGGTGCCCGGTGGGTGGGCCTGGGGTTGGTGAGGAC
GGAGGAAGGGGGGGAGGAGGAAGAGGTGATTCTAGGGGTGAGTGACAAGG
GAACCATCCATGCAGTGAGGCATGCAGAGAGGATGGGTGGTGGTGATTGG
TGGTGATGGAGGAGGTCGAGGAAGGGACGAGGAGGGTTGAGAGGGCGGGA
AACGTAGGCGGGCACGTGGGTTTAGGGCCACACAAGAGGGGAGAGAGTGA
AGGCAGAAGAAGTG
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protein sequence of jgi.p|Nanoce1779_2|220151

>mRNA_8793-protein ID=mRNA_8793-protein|Name=jgi.p|Nanoce1779_2|220151|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MGGGGVRQQASIRCETRWRAPVKLSVVAMLSGGGREGGREEERQGRGGVR
LYVTGLDSELLACAVSGGGRRKEGGSGGEGSYGLQPLTKQKRRMQREEEK
EKEEKRGKEKARFEQGKEEGIETRRPQFHTSREAGREGGRARCCWYRALP
LILALAGSMRPSRARSVRVPGGWAWGW*
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mRNA from alignment at scaffold_28:173027..173840+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8793 ID=mRNA_8793|Name=jgi.p|Nanoce1779_2|220151|organism=Nannochloropsis oceanica|type=mRNA|length=814bp|location=Sequence derived from alignment at scaffold_28:173027..173840+ (Nannochloropsis oceanica)
CTATGATATGAAGACACTTGGCCAGGCCGGCGGTGAAGGAGGGAGGAGGG
AGGGAGGGAGGGATGGGGGGAGGAGGGGTCAGACAGCAGGCATCAATTCG
ATGTGAGACAAGGTGGAGGGCGCCAGTGAAGCTCAGCGTGGTGGCGATGC
TGTCGGGGGGAGGGAGGGAGGGAGGCAGGGAGGAAGAGAGGCAAGGGAGG
GGGGGAGTGAGGTTGTATGTCACGGGTTTAGATTCGGAATTGTTGGCCTG
CGCGGTGTCGGGAGGAGGGAGAAGGAAGGAGGGAGGAAGCGGAGGAGAGG
GGAGCTACGGGCTGCAGCCCCTTACCAAGCAAAAGCGACGGATGCAGAGA
GAAGAGGAAAAAGAAAAAGAAGAAAAGAGGGGGAAAGAAAAAGCACGATT
TGAACAAGGGAAGGAGGAAGGGATAGAGACGAGGCGTCCACAATTCCACA
CTTCGAGGGAGGCGGGAAGGGAGGGAGGGAGGGCAAGGTGCTGCTGGTAC
AGGGCCCTGCCTCTCATCCTAGCGCTAGCCGGCTCCATGAGGCCTTCACG
GGCTCGGTCCGTGCGGGTGCCCGGTGGGTGGGCCTGGGGTTGGTGAGGAC
GGAGGAAGGGGGGGAGGAGGAAGAGGTGATTCTAGGGGTGAGTGACAAGG
GAACCATCCATGCAGTGAGGCATGCAGAGAGGATGGGTGGTGGTGATTGG
TGGTGATGGAGGAGGTCGAGGAAGGGACGAGGAGGGTTGAGAGGGCGGGA
AACGTAGGCGGGCACGTGGGTTTAGGGCCACACAAGAGGGGAGAGAGTGA
AGGCAGAAGAAGTG
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Coding sequence (CDS) from alignment at scaffold_28:173027..173840+

>mRNA_8793 ID=mRNA_8793|Name=jgi.p|Nanoce1779_2|220151|organism=Nannochloropsis oceanica|type=CDS|length=534bp|location=Sequence derived from alignment at scaffold_28:173027..173840+ (Nannochloropsis oceanica)
ATGGGGGGAGGAGGGGTCAGACAGCAGGCATCAATTCGATGTGAGACAAG
GTGGAGGGCGCCAGTGAAGCTCAGCGTGGTGGCGATGCTGTCGGGGGGAG
GGAGGGAGGGAGGCAGGGAGGAAGAGAGGCAAGGGAGGGGGGGAGTGAGG
TTGTATGTCACGGGTTTAGATTCGGAATTGTTGGCCTGCGCGGTGTCGGG
AGGAGGGAGAAGGAAGGAGGGAGGAAGCGGAGGAGAGGGGAGCTACGGGC
TGCAGCCCCTTACCAAGCAAAAGCGACGGATGCAGAGAGAAGAGGAAAAA
GAAAAAGAAGAAAAGAGGGGGAAAGAAAAAGCACGATTTGAACAAGGGAA
GGAGGAAGGGATAGAGACGAGGCGTCCACAATTCCACACTTCGAGGGAGG
CGGGAAGGGAGGGAGGGAGGGCAAGGTGCTGCTGGTACAGGGCCCTGCCT
CTCATCCTAGCGCTAGCCGGCTCCATGAGGCCTTCACGGGCTCGGTCCGT
GCGGGTGCCCGGTGGGTGGGCCTGGGGTTGGTGA
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Synonyms
Publications