jgi.p|Nanoce1779_2|576499, mRNA_193 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576499
Unique NamemRNA_193
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1809
Alignment locationscaffold_3:484581..486389 -

Link to JBrowse

Properties
Property NameValue
TranscriptId576585
TrackFilteredModels2
ProteinId576499
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:484581..486389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576499gene_193Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576499mRNA_193-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_193CDS_193Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_193 ID=mRNA_193|Name=jgi.p|Nanoce1779_2|576499|organism=Nannochloropsis oceanica|type=mRNA|length=1809bp
AGCTGCCAAGACCACCGCGACCTCCCCATCATGCAAAAGCTCTCATTCTC
AAACCCGATGTTCAGCGTACTTGCCGCTCCTGTGGTCGTGGCACTGTGAG
ATGAAGGAAGGCTTGCGGGAAGGCCTTCACATAAGAGCTCAACCTCAAGT
CGTTCCTCCGGGTATGCTTATCACCCCAGAAATGATGCACTACATTCTGG
GTACAGGGGGAAGTTATTGAGTTTGAACATACCTTCGGGACTCCATGGTG
CCCCCAATAAAATATCATTTCCATGTTTTGGCTCCCTGGCGGGCGGGAGA
AAGGAGGTACGCAATCACTGCATGTCCGTAGAAGGGTTTTCGAAGAGAAG
CAAAGCTGCCCCCCCGACCCACAGAACAGTATCTTGATGCCTTGAACTAC
ATGACCTAAATCTATATCCCTTCTTTCTTTGTTATTTGGTGCTCTTACTA
TGCGAAAGATGCACTCTCCTAAAGTATTTCCTTTCCTAGCTATTTCCCTC
TTTGACCAACAGCCGCTCAGTTTTCCTCCTTCTCCCTTCTTCTATATGTG
TATGCTGCCCTTGGCGGAGTAAATTGAGACTCAATCGGAGATTTCATTTC
ATGTACTACCATCAAGGTAGCTTGGGAGAGAAGATAGAAAGACGGGGTTA
AAGAGCGGAAGAGATGAGGCTCTCGCTTCCAGTTTACTCTGACTATACCT
CCACGCACTCAGGCACACAATGTGGACGCTACAATATAAAGATACCGGCA
TGCACGCATGCACTTTCTCTCCCAAATTCCTGTCCACACATGGGACACAT
CGTGGAAGGAAGGGGGTTTCAAACGCCCCCTTTCTTCCTTGGCCTCCTTC
CTTTCTTCTCTCTTTCCTCTTCTCTCTTTCCACCCTCTTTCCTCTAGCTA
AAAACGCCTACCTACTGGTACCTACTTGCTGCTAATCTGATCTTTTTTAA
TTTCTTATCTGCATTTATCGTGGGGAGGTTCCTAATACGTGGCAGCAATG
CAAACGCGCAAACCCTCTTCATCTTTCCTACTCTTAAAGTGTCTAGCTTG
CGCACTCCTCCCTCCCTTCCCTCCTTTCTTCCATCCTTCACCCTTCTCAC
ACGTCGCCTTGTCGCGACCGTATCTTCTTTCCAGGCATTTGTATCTTCAA
CGTATGATTCAACAGGCTGGCCCGAGCGGTCTTACCAATGGAAGAAGGAG
GAGCAGGCACAACAATCTTCAGGTTTGGCGGTCGGTCCATCACGTCGCTC
GCCGAAAGACTCCGCTGAAGCGCCGAAGGCTCTTCAGCAAGCAAATGACC
ATGAAGTCTTCTCTTGGCAGCTGCGAAAAGTCCTCCTTCACCACCAGAAT
TATGTTGTTCAGTCGTCGTCGTCGTCTCTCCTCCTGCTCGCCTCCCCGTG
TTCTTGAGGCTGTTAAGGTTCCCGTGGCTGCTCCTTCGCCGGTGGTGGGT
GCCAGCCAAGGTGGAGAGAGGGACCTGACGAAGAGAGGGAGAAGTCTTGG
CCATTTTAAGAGCAGGACGCTGCACAGGCTCGTCATCATGGAAGGCATCG
GTGGCGGAGGAGGTGATTGTGGTGACAATATCTTCCTCTCTCCGTTCCTC
ATCCGCTCCGTCGTCCATGCACTGCTTGCCAGTCTTGATCTCCAGCTGCT
GCTGCTGCAACTGTTGATTTTCTTGACAAAATAAATCGCTTGATCCGCGC
CGCCTGCGTCCCCCTCGCCCGTTCTCGTTTACCCTCTCTCCCTCCTCGTC
GCTTGAGAAGCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCAAGACTCCCG
CACCGTGTG
back to top

protein sequence of jgi.p|Nanoce1779_2|576499

>mRNA_193-protein ID=mRNA_193-protein|Name=jgi.p|Nanoce1779_2|576499|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MQTRKPSSSFLLLKCLACALLPPFPPFFHPSPFSHVALSRPYLLSRHLYL
QRMIQQAGPSGLTNGRRRSRHNNLQVWRSVHHVARRKTPLKRRRLFSKQM
TMKSSLGSCEKSSFTTRIMLFSRRRRLSSCSPPRVLEAVKVPVAAPSPVV
GASQGGERDLTKRGRSLGHFKSRTLHRLVIMEGIGGGGGDCGDNIFLSPF
LIRSVVHALLASLDLQLLLLQLLIFLTK*
back to top

mRNA from alignment at scaffold_3:484581..486389-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_193 ID=mRNA_193|Name=jgi.p|Nanoce1779_2|576499|organism=Nannochloropsis oceanica|type=mRNA|length=1809bp|location=Sequence derived from alignment at scaffold_3:484581..486389- (Nannochloropsis oceanica)
AGCTGCCAAGACCACCGCGACCTCCCCATCATGCAAAAGCTCTCATTCTC
AAACCCGATGTTCAGCGTACTTGCCGCTCCTGTGGTCGTGGCACTGTGAG
ATGAAGGAAGGCTTGCGGGAAGGCCTTCACATAAGAGCTCAACCTCAAGT
CGTTCCTCCGGGTATGCTTATCACCCCAGAAATGATGCACTACATTCTGG
GTACAGGGGGAAGTTATTGAGTTTGAACATACCTTCGGGACTCCATGGTG
CCCCCAATAAAATATCATTTCCATGTTTTGGCTCCCTGGCGGGCGGGAGA
AAGGAGGTACGCAATCACTGCATGTCCGTAGAAGGGTTTTCGAAGAGAAG
CAAAGCTGCCCCCCCGACCCACAGAACAGTATCTTGATGCCTTGAACTAC
ATGACCTAAATCTATATCCCTTCTTTCTTTGTTATTTGGTGCTCTTACTA
TGCGAAAGATGCACTCTCCTAAAGTATTTCCTTTCCTAGCTATTTCCCTC
TTTGACCAACAGCCGCTCAGTTTTCCTCCTTCTCCCTTCTTCTATATGTG
TATGCTGCCCTTGGCGGAGTAAATTGAGACTCAATCGGAGATTTCATTTC
ATGTACTACCATCAAGGTAGCTTGGGAGAGAAGATAGAAAGACGGGGTTA
AAGAGCGGAAGAGATGAGGCTCTCGCTTCCAGTTTACTCTGACTATACCT
CCACGCACTCAGGCACACAATGTGGACGCTACAATATAAAGATACCGGCA
TGCACGCATGCACTTTCTCTCCCAAATTCCTGTCCACACATGGGACACAT
CGTGGAAGGAAGGGGGTTTCAAACGCCCCCTTTCTTCCTTGGCCTCCTTC
CTTTCTTCTCTCTTTCCTCTTCTCTCTTTCCACCCTCTTTCCTCTAGCTA
AAAACGCCTACCTACTGGTACCTACTTGCTGCTAATCTGATCTTTTTTAA
TTTCTTATCTGCATTTATCGTGGGGAGGTTCCTAATACGTGGCAGCAATG
CAAACGCGCAAACCCTCTTCATCTTTCCTACTCTTAAAGTGTCTAGCTTG
CGCACTCCTCCCTCCCTTCCCTCCTTTCTTCCATCCTTCACCCTTCTCAC
ACGTCGCCTTGTCGCGACCGTATCTTCTTTCCAGGCATTTGTATCTTCAA
CGTATGATTCAACAGGCTGGCCCGAGCGGTCTTACCAATGGAAGAAGGAG
GAGCAGGCACAACAATCTTCAGGTTTGGCGGTCGGTCCATCACGTCGCTC
GCCGAAAGACTCCGCTGAAGCGCCGAAGGCTCTTCAGCAAGCAAATGACC
ATGAAGTCTTCTCTTGGCAGCTGCGAAAAGTCCTCCTTCACCACCAGAAT
TATGTTGTTCAGTCGTCGTCGTCGTCTCTCCTCCTGCTCGCCTCCCCGTG
TTCTTGAGGCTGTTAAGGTTCCCGTGGCTGCTCCTTCGCCGGTGGTGGGT
GCCAGCCAAGGTGGAGAGAGGGACCTGACGAAGAGAGGGAGAAGTCTTGG
CCATTTTAAGAGCAGGACGCTGCACAGGCTCGTCATCATGGAAGGCATCG
GTGGCGGAGGAGGTGATTGTGGTGACAATATCTTCCTCTCTCCGTTCCTC
ATCCGCTCCGTCGTCCATGCACTGCTTGCCAGTCTTGATCTCCAGCTGCT
GCTGCTGCAACTGTTGATTTTCTTGACAAAATAAATCGCTTGATCCGCGC
CGCCTGCGTCCCCCTCGCCCGTTCTCGTTTACCCTCTCTCCCTCCTCGTC
GCTTGAGAAGCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCAAGACTCCCG
CACCGTGTG
back to top

Coding sequence (CDS) from alignment at scaffold_3:484581..486389-

>mRNA_193 ID=mRNA_193|Name=jgi.p|Nanoce1779_2|576499|organism=Nannochloropsis oceanica|type=CDS|length=687bp|location=Sequence derived from alignment at scaffold_3:484581..486389- (Nannochloropsis oceanica)
ATGCAAACGCGCAAACCCTCTTCATCTTTCCTACTCTTAAAGTGTCTAGC
TTGCGCACTCCTCCCTCCCTTCCCTCCTTTCTTCCATCCTTCACCCTTCT
CACACGTCGCCTTGTCGCGACCGTATCTTCTTTCCAGGCATTTGTATCTT
CAACGTATGATTCAACAGGCTGGCCCGAGCGGTCTTACCAATGGAAGAAG
GAGGAGCAGGCACAACAATCTTCAGGTTTGGCGGTCGGTCCATCACGTCG
CTCGCCGAAAGACTCCGCTGAAGCGCCGAAGGCTCTTCAGCAAGCAAATG
ACCATGAAGTCTTCTCTTGGCAGCTGCGAAAAGTCCTCCTTCACCACCAG
AATTATGTTGTTCAGTCGTCGTCGTCGTCTCTCCTCCTGCTCGCCTCCCC
GTGTTCTTGAGGCTGTTAAGGTTCCCGTGGCTGCTCCTTCGCCGGTGGTG
GGTGCCAGCCAAGGTGGAGAGAGGGACCTGACGAAGAGAGGGAGAAGTCT
TGGCCATTTTAAGAGCAGGACGCTGCACAGGCTCGTCATCATGGAAGGCA
TCGGTGGCGGAGGAGGTGATTGTGGTGACAATATCTTCCTCTCTCCGTTC
CTCATCCGCTCCGTCGTCCATGCACTGCTTGCCAGTCTTGATCTCCAGCT
GCTGCTGCTGCAACTGTTGATTTTCTTGACAAAATAA
back to top
Synonyms
Publications