jgi.p|Nanoce1779_2|604850, mRNA_9005 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604850
Unique NamemRNA_9005
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length834
Alignment locationscaffold_30:176061..176894 -

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Properties
Property NameValue
TranscriptId604936
TrackFilteredModels2
ProteinId604850
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:176061..176894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604850gene_9005Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604850mRNA_9005-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9005CDS_9005Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9005 ID=mRNA_9005|Name=jgi.p|Nanoce1779_2|604850|organism=Nannochloropsis oceanica|type=mRNA|length=834bp
CAGTCCAAGCATCGCCTGCCAAGCTAGCTAGCCTTCCCACCTATCCTACC
TATCCTATCCTCCCACCACACCAAGCACTGCAGTAGTCATGTCCCGGCAC
CGCGCCATCCGCAACCGGGCCTACAGCTACGATGACGACTATGACGACTA
CGGCTACGACGACGAGGAAGAAGAGAATGAGGAGGCAATGGAGGGGACAC
AAGCGTACCGCTATGGCCAGCAGCACCACCAGGACGAGCAGGAGGGTCAG
GAGGGCGCGATACCCACACGGCAAGCCTCCCTGTCCTCATTTCTCGACCA
CGCCACCGCGCAACACCAGGCCCCTACTGCTCCCATTCCTCAACGGGCTC
GTCCACCTCCACCCTCGTCCAAGCATCACCATCACCAACCCCATCCCCAC
GGGCACCACGACGAGGACGATGCAGCCCACCCGCGCCTTGCCACCATTTC
TGAGGCCTTTGATGCCGAGCTCGTCGACCCCGCCTTCCACCTCATCAAAG
GCAGTGGACAAGCCGATGCCTTCTCCGACCATCGCATCCGAATGGCTGTG
CGTCAAGCTAATTATGATGCGGACGCCGCCATGGCGAACCTACTTCTCCA
TTCCTCCTCCACCTCCTGCGCCTCCTCCACCGCCTCCTCCTCCCTTCCTG
CCTCCGTCGTCTCCTCCCGCGGAACTACTCCCTCCCCTCCTCCACGGCCA
ATATCACCTTCGATGACCACTGGAGGAGCAGCGGCAGCAATTGTATCAGC
AGCAGCAACAACAACAACAACAGCAGCCTCCATAATGAACTCCCCCCCTC
CCCCCCTCCCTCCCGGCCACCTCGTCCGTCCCTC
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protein sequence of jgi.p|Nanoce1779_2|604850

>mRNA_9005-protein ID=mRNA_9005-protein|Name=jgi.p|Nanoce1779_2|604850|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MTTMTTTATTTRKKRMRRQWRGHKRTAMASSTTRTSRRVRRARYPHGKPP
CPHFSTTPPRNTRPLLLPFLNGLVHLHPRPSITITNPIPTGTTTRTMQPT
RALPPFLRPLMPSSSTPPSTSSKAVDKPMPSPTIASEWLCVKLIMMRTPP
WRTYFSIPPPPPAPPPPPPPPFLPPSSPPAELLPPLLHGQYHLR*
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mRNA from alignment at scaffold_30:176061..176894-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9005 ID=mRNA_9005|Name=jgi.p|Nanoce1779_2|604850|organism=Nannochloropsis oceanica|type=mRNA|length=834bp|location=Sequence derived from alignment at scaffold_30:176061..176894- (Nannochloropsis oceanica)
CAGTCCAAGCATCGCCTGCCAAGCTAGCTAGCCTTCCCACCTATCCTACC
TATCCTATCCTCCCACCACACCAAGCACTGCAGTAGTCATGTCCCGGCAC
CGCGCCATCCGCAACCGGGCCTACAGCTACGATGACGACTATGACGACTA
CGGCTACGACGACGAGGAAGAAGAGAATGAGGAGGCAATGGAGGGGACAC
AAGCGTACCGCTATGGCCAGCAGCACCACCAGGACGAGCAGGAGGGTCAG
GAGGGCGCGATACCCACACGGCAAGCCTCCCTGTCCTCATTTCTCGACCA
CGCCACCGCGCAACACCAGGCCCCTACTGCTCCCATTCCTCAACGGGCTC
GTCCACCTCCACCCTCGTCCAAGCATCACCATCACCAACCCCATCCCCAC
GGGCACCACGACGAGGACGATGCAGCCCACCCGCGCCTTGCCACCATTTC
TGAGGCCTTTGATGCCGAGCTCGTCGACCCCGCCTTCCACCTCATCAAAG
GCAGTGGACAAGCCGATGCCTTCTCCGACCATCGCATCCGAATGGCTGTG
CGTCAAGCTAATTATGATGCGGACGCCGCCATGGCGAACCTACTTCTCCA
TTCCTCCTCCACCTCCTGCGCCTCCTCCACCGCCTCCTCCTCCCTTCCTG
CCTCCGTCGTCTCCTCCCGCGGAACTACTCCCTCCCCTCCTCCACGGCCA
ATATCACCTTCGATGACCACTGGAGGAGCAGCGGCAGCAATTGTATCAGC
AGCAGCAACAACAACAACAACAGCAGCCTCCATAATGAACTCCCCCCCTC
CCCCCCTCCCTCCCGGCCACCTCGTCCGTCCCTC
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Coding sequence (CDS) from alignment at scaffold_30:176061..176894-

>mRNA_9005 ID=mRNA_9005|Name=jgi.p|Nanoce1779_2|604850|organism=Nannochloropsis oceanica|type=CDS|length=585bp|location=Sequence derived from alignment at scaffold_30:176061..176894- (Nannochloropsis oceanica)
ATGACGACTATGACGACTACGGCTACGACGACGAGGAAGAAGAGAATGAG
GAGGCAATGGAGGGGACACAAGCGTACCGCTATGGCCAGCAGCACCACCA
GGACGAGCAGGAGGGTCAGGAGGGCGCGATACCCACACGGCAAGCCTCCC
TGTCCTCATTTCTCGACCACGCCACCGCGCAACACCAGGCCCCTACTGCT
CCCATTCCTCAACGGGCTCGTCCACCTCCACCCTCGTCCAAGCATCACCA
TCACCAACCCCATCCCCACGGGCACCACGACGAGGACGATGCAGCCCACC
CGCGCCTTGCCACCATTTCTGAGGCCTTTGATGCCGAGCTCGTCGACCCC
GCCTTCCACCTCATCAAAGGCAGTGGACAAGCCGATGCCTTCTCCGACCA
TCGCATCCGAATGGCTGTGCGTCAAGCTAATTATGATGCGGACGCCGCCA
TGGCGAACCTACTTCTCCATTCCTCCTCCACCTCCTGCGCCTCCTCCACC
GCCTCCTCCTCCCTTCCTGCCTCCGTCGTCTCCTCCCGCGGAACTACTCC
CTCCCCTCCTCCACGGCCAATATCACCTTCGATGA
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Synonyms
Publications