|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 560191 |
| Track | FilteredModels2 |
| ProteinId | 560105 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_30 | supercontig | scaffold_30:275098..277480 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9036 ID=mRNA_9036|Name=jgi.p|Nanoce1779_2|560105|organism=Nannochloropsis oceanica|type=mRNA|length=2029bp
AGGTGCACACATAGCCACCATCGCCACCAGCAGAATGGCGCGGGATCTTT
CCTGCGGTGCAGCATCGACGTTCGTACTAGTATGCCTTGTCCTCGTCCTT
TCCCTCGCCGAGGCCTTTCTCCCGGCTATACCCAAGACCCCTGCGACAAC
ACGCCGATTCTCCTCACCCGAAACAATTACATCACCGTTTGAGTCTGGCG
TCTCGTCCGGCCCGAACGATGACTTTTTGCCTCTGACATTCGAGAATGTT
GAGTTGGTGCTGGACGAGATGCGGCCTTACCTCATGTCGGATGGTGGCAA
CGTGGTAATTTCGGAGATTGACGGTCCGGTTGTGAAGCTTGAGCTGCAAG
GGGCATGCGGAAGCTGTCCTTCTTCCACCATGACCATGAAAATGGGCCTG
GAACGCCGCCTTCGCGAGAAGATCCCCGAAATTAGCGAGGTCATCCAAGC
CATGCCCGAAGGACCTGCACTCACCACAGAAAACATAGATGGTGTCCTAG
AGGGCGTTCGCCCCTTCTTGATGGTCGCAGGGGGCTCAATCTCAGTGAAG
GAGATCTCGGGTCTGGGCGGGCTACAACCTCGGGTCCTCTTGCACATGGA
GGGAAACAATCAAAGCCTCTTCTCGGTGCGGATGGAGATCACGCAAAGAA
TACTGCGGAATTTCATGGTGGCTGGTTTGCGTGTGGATTGGACGGACCAA
GAGGGTGTGCTCTAGGGATACGCTGGGTGATTTTTAAAGGATGGATGGCG
CTGTGAGGGCGCGCCTCCGTTTTCGGTGGGAAGAGAACAATCTCTCCTAG
AAATATGGCAATGGCGTGGCGTGGGTAAGGTCGTGCCGGAAAGTACGCGC
AAATGGCCACTTTGATTGCCATGGGGGTTCGATGATTGAGGGAGCACAGA
GACATTTGATAGATGATGACGGAGAAAGGGAAGGAACGGCACATGCCGCG
GACATTGAGGTATCTCTCACGTCATGTCGTCCTCCTCCCTCTCCGTTAAG
CCAAACAGCTGTAAAGAAACAGAAATACTAAGAGGAACCATGTCCTCTTG
CACAATCCACAGCTACTTATTCTTTGCGAAAGACATTTCCATTGCGAATA
TCGGTGAGACATGACTCTACCTCCTACCTGATCCCTCGCGCCAAATCAAA
GGACGACAATGCTTCTGCTTTTTTACATACTCCTTTTCGGTACAACGGAC
GTTTCAGGAGTTTAATTGAAGGTCGCGCAAACAATAAGTATCCCTTACCT
TCCTGGATTTGTAGCGTGGTTGGAAGGTCACACAGACAGCACACAGAGCG
TTGCCCTCTTGCCTGGTGCGGTGCCATCCAGTCCAGCTCGTCCCAGCGAA
GGAACTGCTGGCTTTATATGTCTTTTTAAAGAACACAAATCTTTCATAAT
TGCTTGCTTGGGATTGCCTTTTCATTTGCTGCCCTACATACAGACCAGAA
GGCCCCTTACGTCTACTTCGCTGACAGACGCCCATCAGTCCTCCCCATCC
AAACCCACACCAAACATAATCTAGTGTCCCCGTGACGACATACATCACAT
CAAATAATTACCTGGACACGAAGGCTTCGCGGCTGTTCCCTTAAATCATA
AAGAAACAACACACTTGACTCCCTTCCAAAAACATTTCCGATATCCGCGA
ATAACCGAGCAGGCCCATCAAGTCTCAGAATGACCCGTTATAGGTAAGGG
ACGACCCTGGTTCTCAATTGTGCGGGCCATTTTTCCACCTATCCACGGGG
CAAGAATGTTCCTGACGACGCGAATAATGAAGAGTCATGTCTCATTTATA
GCGCAAGATTGGCGCGTTAGGTCTCACTTGGCGCATAATCAATACGGTGG
ACAGCTTCAAGAACCTTTATGGCGCAGTGCATTAACCGGATTTGGCCCTG
CACGGTGCTATTGGCAGCATTGGATGCATGATGCTCTTTGGTTGAATAGG
GCTTGTAGCTCGAGTATGTCTCCATGCGGCGGGTATCGTTACAGGTCGGG
CGATGACCGTCTCGCGTCAATCCACTCTG back to topprotein sequence of jgi.p|Nanoce1779_2|560105 >mRNA_9036-protein ID=mRNA_9036-protein|Name=jgi.p|Nanoce1779_2|560105|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MARDLSCGAASTFVLVCLVLVLSLAEAFLPAIPKTPATTRRFSSPETITS
PFESGVSSGPNDDFLPLTFENVELVLDEMRPYLMSDGGNVVISEIDGPVV
KLELQGACGSCPSSTMTMKMGLERRLREKIPEISEVIQAMPEGPALTTEN
IDGVLEGVRPFLMVAGGSISVKEISGLGGLQPRVLLHMEGNNQSLFSVRM
EITQRILRNFMVAGLRVDWTDQEGVL* back to topmRNA from alignment at scaffold_30:275098..277480- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9036 ID=mRNA_9036|Name=jgi.p|Nanoce1779_2|560105|organism=Nannochloropsis oceanica|type=mRNA|length=2383bp|location=Sequence derived from alignment at scaffold_30:275098..277480- (Nannochloropsis oceanica)
AGGTGCACACATAGCCACCATCGCCACCAGCAGAATGGCGCGGGATCTTT
CCTGCGGTGCAGCATCGACGTTCGTACTAGTATGCCTTGTCCTCGTCCTT
TCCCTCGCCGAGGCCTTTCTCCCGGCTATACCCAAGACCCCTGCGACAAC
ACGCCGATTCTCCTCACCCGAAACAATTACATCACCGTTTGAGTCTGGCG
TCTCGGTAAGTGTGCTTCTATGGTGCCCGTGAAAGTGTAGGGAGTGATGA
CATTGCTTTTTCCATGGGCTATGTCAAGGCCTCAGATCCTACCCGCTTCA
CACTTTCCATATTTTTTGATAGTCCGGCCCGAACGATGACTTTTTGCCTC
TGACATTCGAGAATGTTGAGTTGGTGCTGGACGAGATGCGGCCTTACCTC
ATGTCGGATGGGTAAGAGAGAAGTTATATAATGGATCTTTGAGGGGGTGT
CGGACAGCAGTGGAGTCGATAGATTGCTGATACTCATACTGTCCTCCTTA
TCTATTTTCGACAGTGGCAACGTGGTAATTTCGGAGATTGACGGTCCGGT
TGTGAAGCTTGAGCTGCAAGGGGCATGCGGAAGCTGTCCTTCTTCCACCA
TGACCATGAAAATGGGCCTGGAACGCCGCCTTCGCGAGAAGATCCCCGAA
ATTAGCGAGGTGGGTAATTTTGCGGGTTGGGATAAAGGCATGGAATGAAC
ACTTGGAAGATGGAAGAATCCAGGAATATTTACCTTGCAACCACGCTCAC
TACTCGATCGTCCTCTACTTTTTTTCGATGTACACACGAACAGGTCATCC
AAGCCATGCCCGAAGGACCTGCACTCACCACAGAAAACATAGATGGTGTC
CTAGAGGGCGTTCGCCCCTTCTTGATGGTCGCAGGGGGCTCAATCTCAGT
GAAGGAGATCTCGGGTCTGGGCGGGCTACAACCTCGGGTCCTCTTGCACA
TGGAGGGAAACAATCAAAGCCTCTTCTCGGTGCGGATGGAGATCACGCAA
AGAATACTGCGGAATTTCATGGTGGCTGGTTTGCGTGTGGATTGGACGGA
CCAAGAGGGTGTGCTCTAGGGATACGCTGGGTGATTTTTAAAGGATGGAT
GGCGCTGTGAGGGCGCGCCTCCGTTTTCGGTGGGAAGAGAACAATCTCTC
CTAGAAATATGGCAATGGCGTGGCGTGGGTAAGGTCGTGCCGGAAAGTAC
GCGCAAATGGCCACTTTGATTGCCATGGGGGTTCGATGATTGAGGGAGCA
CAGAGACATTTGATAGATGATGACGGAGAAAGGGAAGGAACGGCACATGC
CGCGGACATTGAGGTATCTCTCACGTCATGTCGTCCTCCTCCCTCTCCGT
TAAGCCAAACAGCTGTAAAGAAACAGAAATACTAAGAGGAACCATGTCCT
CTTGCACAATCCACAGCTACTTATTCTTTGCGAAAGACATTTCCATTGCG
AATATCGGTGAGACATGACTCTACCTCCTACCTGATCCCTCGCGCCAAAT
CAAAGGACGACAATGCTTCTGCTTTTTTACATACTCCTTTTCGGTACAAC
GGACGTTTCAGGAGTTTAATTGAAGGTCGCGCAAACAATAAGTATCCCTT
ACCTTCCTGGATTTGTAGCGTGGTTGGAAGGTCACACAGACAGCACACAG
AGCGTTGCCCTCTTGCCTGGTGCGGTGCCATCCAGTCCAGCTCGTCCCAG
CGAAGGAACTGCTGGCTTTATATGTCTTTTTAAAGAACACAAATCTTTCA
TAATTGCTTGCTTGGGATTGCCTTTTCATTTGCTGCCCTACATACAGACC
AGAAGGCCCCTTACGTCTACTTCGCTGACAGACGCCCATCAGTCCTCCCC
ATCCAAACCCACACCAAACATAATCTAGTGTCCCCGTGACGACATACATC
ACATCAAATAATTACCTGGACACGAAGGCTTCGCGGCTGTTCCCTTAAAT
CATAAAGAAACAACACACTTGACTCCCTTCCAAAAACATTTCCGATATCC
GCGAATAACCGAGCAGGCCCATCAAGTCTCAGAATGACCCGTTATAGGTA
AGGGACGACCCTGGTTCTCAATTGTGCGGGCCATTTTTCCACCTATCCAC
GGGGCAAGAATGTTCCTGACGACGCGAATAATGAAGAGTCATGTCTCATT
TATAGCGCAAGATTGGCGCGTTAGGTCTCACTTGGCGCATAATCAATACG
GTGGACAGCTTCAAGAACCTTTATGGCGCAGTGCATTAACCGGATTTGGC
CCTGCACGGTGCTATTGGCAGCATTGGATGCATGATGCTCTTTGGTTGAA
TAGGGCTTGTAGCTCGAGTATGTCTCCATGCGGCGGGTATCGTTACAGGT
CGGGCGATGACCGTCTCGCGTCAATCCACTCTG back to topCoding sequence (CDS) from alignment at scaffold_30:275098..277480- >mRNA_9036 ID=mRNA_9036|Name=jgi.p|Nanoce1779_2|560105|organism=Nannochloropsis oceanica|type=CDS|length=2724bp|location=Sequence derived from alignment at scaffold_30:275098..277480- (Nannochloropsis oceanica)
GTCATCCAAGCCATGCCCGAAGGACCTGCACTCACCACAGAAAACATAGA
TGGTGTCCTAGAGGGCGTTCGCCCCTTCTTGATGGTCGCAGGGGGCTCAA
TCTCAGTGAAGGAGATCTCGGGTCTGGGCGGGCTACAACCTCGGGTCCTC
TTGCACATGGAGGGAAACAATCAAAGCCTCTTCTCGGTGCGGATGGAGAT
CACGCAAAGAATACTGCGGAATTTCATGGTGGCTGGTTTGCGTGTGGATT
GGACGGACCAAGAGGGTGTGCTCTAGTGGCAACGTGGTAATTTCGGAGAT
TGACGGTCCGGTTGTGAAGCTTGAGCTGCAAGGGGCATGCGGAAGCTGTC
CTTCTTCCACCATGACCATGAAAATGGGCCTGGAACGCCGCCTTCGCGAG
AAGATCCCCGAAATTAGCGAGTCCGGCCCGAACGATGACTTTTTGCCTCT
GACATTCGAGAATGTTGAGTTGGTGCTGGACGAGATGCGGCCTTACCTCA
TGTCGGATGGATGGCGCGGGATCTTTCCTGCGGTGCAGCATCGACGTTCG
TACTAGTATGCCTTGTCCTCGTCCTTTCCCTCGCCGAGGCCTTTCTCCCG
GCTATACCCAAGACCCCTGCGACAACACGCCGATTCTCCTCACCCGAAAC
AATTACATCACCGTTTGAGTCTGGCGTCTCGGTCATCCAAGCCATGCCCG
AAGGACCTGCACTCACCACAGAAAACATAGATGGTGTCCTAGAGGGCGTT
CGCCCCTTCTTGATGGTCGCAGGGGGCTCAATCTCAGTGAAGGAGATCTC
GGGTCTGGGCGGGCTACAACCTCGGGTCCTCTTGCACATGGAGGGAAACA
ATCAAAGCCTCTTCTCGGTGCGGATGGAGATCACGCAAAGAATACTGCGG
AATTTCATGGTGGCTGGTTTGCGTGTGGATTGGACGGACCAAGAGGGTGT
GCTCTAGTGGCAACGTGGTAATTTCGGAGATTGACGGTCCGGTTGTGAAG
CTTGAGCTGCAAGGGGCATGCGGAAGCTGTCCTTCTTCCACCATGACCAT
GAAAATGGGCCTGGAACGCCGCCTTCGCGAGAAGATCCCCGAAATTAGCG
AGTCCGGCCCGAACGATGACTTTTTGCCTCTGACATTCGAGAATGTTGAG
TTGGTGCTGGACGAGATGCGGCCTTACCTCATGTCGGATGGATGGCGCGG
GATCTTTCCTGCGGTGCAGCATCGACGTTCGTACTAGTATGCCTTGTCCT
CGTCCTTTCCCTCGCCGAGGCCTTTCTCCCGGCTATACCCAAGACCCCTG
CGACAACACGCCGATTCTCCTCACCCGAAACAATTACATCACCGTTTGAG
TCTGGCGTCTCGGTCATCCAAGCCATGCCCGAAGGACCTGCACTCACCAC
AGAAAACATAGATGGTGTCCTAGAGGGCGTTCGCCCCTTCTTGATGGTCG
CAGGGGGCTCAATCTCAGTGAAGGAGATCTCGGGTCTGGGCGGGCTACAA
CCTCGGGTCCTCTTGCACATGGAGGGAAACAATCAAAGCCTCTTCTCGGT
GCGGATGGAGATCACGCAAAGAATACTGCGGAATTTCATGGTGGCTGGTT
TGCGTGTGGATTGGACGGACCAAGAGGGTGTGCTCTAGTGGCAACGTGGT
AATTTCGGAGATTGACGGTCCGGTTGTGAAGCTTGAGCTGCAAGGGGCAT
GCGGAAGCTGTCCTTCTTCCACCATGACCATGAAAATGGGCCTGGAACGC
CGCCTTCGCGAGAAGATCCCCGAAATTAGCGAGTCCGGCCCGAACGATGA
CTTTTTGCCTCTGACATTCGAGAATGTTGAGTTGGTGCTGGACGAGATGC
GGCCTTACCTCATGTCGGATGGATGGCGCGGGATCTTTCCTGCGGTGCAG
CATCGACGTTCGTACTAGTATGCCTTGTCCTCGTCCTTTCCCTCGCCGAG
GCCTTTCTCCCGGCTATACCCAAGACCCCTGCGACAACACGCCGATTCTC
CTCACCCGAAACAATTACATCACCGTTTGAGTCTGGCGTCTCGGTCATCC
AAGCCATGCCCGAAGGACCTGCACTCACCACAGAAAACATAGATGGTGTC
CTAGAGGGCGTTCGCCCCTTCTTGATGGTCGCAGGGGGCTCAATCTCAGT
GAAGGAGATCTCGGGTCTGGGCGGGCTACAACCTCGGGTCCTCTTGCACA
TGGAGGGAAACAATCAAAGCCTCTTCTCGGTGCGGATGGAGATCACGCAA
AGAATACTGCGGAATTTCATGGTGGCTGGTTTGCGTGTGGATTGGACGGA
CCAAGAGGGTGTGCTCTAGTGGCAACGTGGTAATTTCGGAGATTGACGGT
CCGGTTGTGAAGCTTGAGCTGCAAGGGGCATGCGGAAGCTGTCCTTCTTC
CACCATGACCATGAAAATGGGCCTGGAACGCCGCCTTCGCGAGAAGATCC
CCGAAATTAGCGAGTCCGGCCCGAACGATGACTTTTTGCCTCTGACATTC
GAGAATGTTGAGTTGGTGCTGGACGAGATGCGGCCTTACCTCATGTCGGA
TGGATGGCGCGGGATCTTTCCTGCGGTGCAGCATCGACGTTCGTACTAGT
ATGCCTTGTCCTCGTCCTTTCCCTCGCCGAGGCCTTTCTCCCGGCTATAC
CCAAGACCCCTGCGACAACACGCCGATTCTCCTCACCCGAAACAATTACA
TCACCGTTTGAGTCTGGCGTCTCG back to top
|