jgi.p|Nanoce1779_2|524672, mRNA_2070 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|524672
Unique Name	mRNA_2070
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1365
Alignment location	scaffold_4:703091..704575 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	524758
Track	FilteredModels2
ProteinId	524672

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:703091..704575 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524672	gene_2070	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524672	mRNA_2070-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2070	CDS_2070	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:703091..704575+
coding sequence from alignment at scaffold_4:703091..704575+

mRNA sequence

>mRNA_2070 ID=mRNA_2070|Name=jgi.p|Nanoce1779_2|524672|organism=Nannochloropsis oceanica|type=mRNA|length=1365bp
ATGCTGACTCGTGTCCACCTAGCTCCTCTGGAAAAGTATTTGTTGCTTTG
CTCTGAAGGCCCGTCGGAGTGCACCGGGAAGTCTGGCGCTGTTGGGTGTT
CCATAACACAACAAACGGTGGGAGTCTTGAGCACCGCCACCTTTTCCCTT
CCTTCACCTGCCTCTATTTCACCACGAGACGCTAGCGCCACCTCTTTCTC
TATCGCTTTGACATCCCCGTCACATGATATTGCCGCTTTGCTGGAAAAAC
CCACGGCGTTGGAAGCCTCGGCCGTGGCGCACTTCAAGAAGGACGCTCCT
TCGGTCCGAGAATATTGCGTCCATGGAACCCTTTTGGAATGTGAGCGGCA
AACTCGAACGGCGGCTACGATATTATCAGGGGGCTCAGCAATCACAGCAG
CCATGAGCACTGCAGCATGCAGCAAACTTCACTTTCGGCGCGTCATTGAA
AGCCATACGGATGTGAGCCTCGGCGACTGTGCTTACCTGTCCGGTTGCCG
GCGAATGCGAACATGCAAGTACATCCACTACGAGATTGAGGAAGAGAGAA
ATAGCCATGGCGACAGCTGCGACCGCCACAGATCACCTGGTGCTGAGGAA
ATTAAAGGTAAACGAGGCCGCTCGCCGGCGCTGCCACATCAGGGGTCCGA
GGGTACACCGGGAATGTGGATGGCGAGCACCACGCTCCCGACCACCCCTC
CAGCACCGGCACAGTGGGTGAACGTGGACGTGTGCAATTTTGAGCTGTCG
ATCTTAGGTCAATTTCCAGTCATCATGGCTGACCCGCCTTGGGAGATTCA
CATGGATCTACCTTATGGTACCATGTCTGACGACGAGGTTTGCAAGCTCA
ATTTCCCTAAGCTGCAAGTGGAAGGCGGGCTCCTTTTTCTGTGGGTCACG
GGTCGGGCGATGGAACGCGCGCGCGAGATTTTTGATTACTGGGGTTACCG
GCAGCTGGAGGAGATCATTTGGATTAAAACCAACCAGCTCCAGAAAGTCA
TCCGCACGGGCCGCACAGGTCATTGGCTGAATCATTCCAAGGAGCATTGC
CTGGTTGGCGTCAAGGGGAATTTTGTTACAACAGGCCTGCATGGGGCTGC
CGGGCGAACCCACCTGAATCGGTACGTGGATTGCGATGTAATAGTCGCCG
AGGTCAGGGAAACAAGCCGCAAGCCCGATGAGATATATGACATAATCGAG
CGTATGTGTCCCGGCGCCCGCAAAATCGAGATTTTTGGCCGCAAGCATAA
CATCCGCGAAGGTTGGATCACGGTGGGGAATCAACTGCCGCCTACCCACT
TGATTGGGGAGGCACTCACACGGTTTCGTCGGTGGGAGGCGGCAAAGCAG
GCAAAGGGTCGCTAA

protein sequence of jgi.p|Nanoce1779_2|524672

>mRNA_2070-protein ID=mRNA_2070-protein|Name=jgi.p|Nanoce1779_2|524672|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MLTRVHLAPLEKYLLLCSEGPSECTGKSGAVGCSITQQTVGVLSTATFSL
PSPASISPRDASATSFSIALTSPSHDIAALLEKPTALEASAVAHFKKDAP
SVREYCVHGTLLECERQTRTAATILSGGSAITAAMSTAACSKLHFRRVIE
SHTDVSLGDCAYLSGCRRMRTCKYIHYEIEEERNSHGDSCDRHRSPGAEE
IKGKRGRSPALPHQGSEGTPGMWMASTTLPTTPPAPAQWVNVDVCNFELS
ILGQFPVIMADPPWEIHMDLPYGTMSDDEVCKLNFPKLQVEGGLLFLWVT
GRAMERAREIFDYWGYRQLEEIIWIKTNQLQKVIRTGRTGHWLNHSKEHC
LVGVKGNFVTTGLHGAAGRTHLNRYVDCDVIVAEVRETSRKPDEIYDIIE
RMCPGARKIEIFGRKHNIREGWITVGNQLPPTHLIGEALTRFRRWEAAKQ
AKGR*

mRNA from alignment at scaffold_4:703091..704575+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2070 ID=mRNA_2070|Name=jgi.p|Nanoce1779_2|524672|organism=Nannochloropsis oceanica|type=mRNA|length=1485bp|location=Sequence derived from alignment at scaffold_4:703091..704575+ (Nannochloropsis oceanica)
ATGCTGACTCGTGTCCACCTAGCTCCTCTGGAAAAGTATTTGTTGCTTTG
CTCTGAAGGCCCGTCGGAGTGCACCGGGAAGTCTGGCGCTGTTGGGTGTT
CCATAACACAACAAACGGTGGGAGTCTTGAGCACCGCCACCTTTTCCCTT
CCTTCACCTGCCTCTATTTCACCACGAGACGCTAGCGCCACCTCTTTCTC
TATCGCTTTGACATCCCCGTCACATGATATTGCCGCTTTGCTGGAAAAAC
CCACGGCGTTGGAAGCCTCGGCCGTGGCGCACTTCAAGAAGGACGCTCCT
TCGGTCCGAGAATATTGCGTCCATGGAACCCTTTTGGAATGTGAGCGGCA
AACTCGAACGGCGGCTACGATATTATCAGGGGGCTCAGCAATCACAGCAG
CCATGAGCACTGCAGCATGCAGCAAACTTCACTTTCGGCGCGTCATTGAA
AGCCATACGGATGTGAGCCTCGGCGACTGTGCTTACCTGTCCGGTTGCCG
GCGAATGCGAACATGCAAGTACATCCACTACGAGATTGAGGAAGAGAGAA
ATAGCCATGGCGACAGCTGCGACCGCCACAGATCACCTGGTGCTGAGGAA
ATTAAAGGTAAACGAGGCCGCTCGCCGGCGCTGCCACATCAGGGGTCCGA
GGGTACACCGGGAATGTGGATGGCGAGCACCACGCTCCCGACCACCCCTC
CAGCACCGGCACAGTGGGTGAACGTGGACGTGTGCAATTTTGAGCTGTCG
ATCTTAGGTCAATTTCCAGTCATCATGGCTGACCCGCCTTGGGAGGTGAG
AAATTTGGGAACAGGGGTTCTTTGTGAAATAAAACCGCGAATAGTGGGGA
TCTTACACCACCACACCGGCTCACTTCTCCCCTCTCTCTTCCCTCACACC
ACACTTTACCAAAAGATTCACATGGATCTACCTTATGGTACCATGTCTGA
CGACGAGGTTTGCAAGCTCAATTTCCCTAAGCTGCAAGTGGAAGGCGGGC
TCCTTTTTCTGTGGGTCACGGGTCGGGCGATGGAACGCGCGCGCGAGATT
TTTGATTACTGGGGTTACCGGCAGCTGGAGGAGATCATTTGGATTAAAAC
CAACCAGCTCCAGAAAGTCATCCGCACGGGCCGCACAGGTCATTGGCTGA
ATCATTCCAAGGAGCATTGCCTGGTTGGCGTCAAGGGGAATTTTGTTACA
ACAGGCCTGCATGGGGCTGCCGGGCGAACCCACCTGAATCGGTACGTGGA
TTGCGATGTAATAGTCGCCGAGGTCAGGGAAACAAGCCGCAAGCCCGATG
AGATATATGACATAATCGAGCGTATGTGTCCCGGCGCCCGCAAAATCGAG
ATTTTTGGCCGCAAGCATAACATCCGCGAAGGTTGGATCACGGTGGGGAA
TCAACTGCCGCCTACCCACTTGATTGGGGAGGCACTCACACGGTTTCGTC
GGTGGGAGGCGGCAAAGCAGGCAAAGGGTCGCTAA

Coding sequence (CDS) from alignment at scaffold_4:703091..704575+

>mRNA_2070 ID=mRNA_2070|Name=jgi.p|Nanoce1779_2|524672|organism=Nannochloropsis oceanica|type=CDS|length=2730bp|location=Sequence derived from alignment at scaffold_4:703091..704575+ (Nannochloropsis oceanica)
ATGCTGACTCGTGTCCACCTAGCTCCTCTGGAAAAGTATTTGTTGCTTTG
CTCTGAAGGCCCGTCGGAGTGCACCGGGAAGTCTGGCGCTGTTGGGTGTT
CCATAACACAACAAACGGTGGGAGTCTTGAGCACCGCCACCTTTTCCCTT
CCTTCACCTGCCTCTATTTCACCACGAGACGCTAGCGCCACCTCTTTCTC
TATCGCTTTGACATCCCCGTCACATGATATTGCCGCTTTGCTGGAAAAAC
CCACGGCGTTGGAAGCCTCGGCCGTGGCGCACTTCAAGAAGGACGCTCCT
TCGGTCCGAGAATATTGCGTCCATGGAACCCTTTTGGAATGTGAGCGGCA
AACTCGAACGGCGGCTACGATATTATCAGGGGGCTCAGCAATCACAGCAG
CCATGAGCACTGCAGCATGCAGCAAACTTCACTTTCGGCGCGTCATTGAA
AGCCATACGGATGTGAGCCTCGGCGACTGTGCTTACCTGTCCGGTTGCCG
GCGAATGCGAACATGCAAGTACATCCACTACGAGATTGAGGAAGAGAGAA
ATAGCCATGGCGACAGCTGCGACCGCCACAGATCACCTGGTGCTGAGGAA
ATTAAAGGTAAACGAGGCCGCTCGCCGGCGCTGCCACATCAGGGGTCCGA
GGGTACACCGGGAATGTGGATGGCGAGCACCACGCTCCCGACCACCCCTC
CAGCACCGGCACAGTGGGTGAACGTGGACGTGTGCAATTTTGAGCTGTCG
ATCTTAGGTCAATTTCCAGTCATCATGGCTGACCCGCCTTGGGAGATTCA
CATGGATCTACCTTATGGTACCATGTCTGACGACGAGGTTTGCAAGCTCA
ATTTCCCTAAGCTGCAAGTGGAAGGCGGGCTCCTTTTTCTGTGGGTCACG
GGTCGGGCGATGGAACGCGCGCGCGAGATTTTTGATTACTGGGGTTACCG
GCAGCTGGAGGAGATCATTTGGATTAAAACCAACCAGCTCCAGAAAGTCA
TCCGCACGGGCCGCACAGGTCATTGGCTGAATCATTCCAAGGAGCATTGC
CTGGTTGGCGTCAAGGGGAATTTTGTTACAACAGGCCTGCATGGGGCTGC
CGGGCGAACCCACCTGAATCGGTACGTGGATTGCGATGTAATAGTCGCCG
AGGTCAGGGAAACAAGCCGCAAGCCCGATGAGATATATGACATAATCGAG
CGTATGTGTCCCGGCGCCCGCAAAATCGAGATTTTTGGCCGCAAGCATAA
CATCCGCGAAGGTTGGATCACGGTGGGGAATCAACTGCCGCCTACCCACT
TGATTGGGGAGGCACTCACACGGTTTCGTCGGTGGGAGGCGGCAAAGCAG
GCAAAGGGTCGCTAAATGCTGACTCGTGTCCACCTAGCTCCTCTGGAAAA
GTATTTGTTGCTTTGCTCTGAAGGCCCGTCGGAGTGCACCGGGAAGTCTG
GCGCTGTTGGGTGTTCCATAACACAACAAACGGTGGGAGTCTTGAGCACC
GCCACCTTTTCCCTTCCTTCACCTGCCTCTATTTCACCACGAGACGCTAG
CGCCACCTCTTTCTCTATCGCTTTGACATCCCCGTCACATGATATTGCCG
CTTTGCTGGAAAAACCCACGGCGTTGGAAGCCTCGGCCGTGGCGCACTTC
AAGAAGGACGCTCCTTCGGTCCGAGAATATTGCGTCCATGGAACCCTTTT
GGAATGTGAGCGGCAAACTCGAACGGCGGCTACGATATTATCAGGGGGCT
CAGCAATCACAGCAGCCATGAGCACTGCAGCATGCAGCAAACTTCACTTT
CGGCGCGTCATTGAAAGCCATACGGATGTGAGCCTCGGCGACTGTGCTTA
CCTGTCCGGTTGCCGGCGAATGCGAACATGCAAGTACATCCACTACGAGA
TTGAGGAAGAGAGAAATAGCCATGGCGACAGCTGCGACCGCCACAGATCA
CCTGGTGCTGAGGAAATTAAAGGTAAACGAGGCCGCTCGCCGGCGCTGCC
ACATCAGGGGTCCGAGGGTACACCGGGAATGTGGATGGCGAGCACCACGC
TCCCGACCACCCCTCCAGCACCGGCACAGTGGGTGAACGTGGACGTGTGC
AATTTTGAGCTGTCGATCTTAGGTCAATTTCCAGTCATCATGGCTGACCC
GCCTTGGGAGATTCACATGGATCTACCTTATGGTACCATGTCTGACGACG
AGGTTTGCAAGCTCAATTTCCCTAAGCTGCAAGTGGAAGGCGGGCTCCTT
TTTCTGTGGGTCACGGGTCGGGCGATGGAACGCGCGCGCGAGATTTTTGA
TTACTGGGGTTACCGGCAGCTGGAGGAGATCATTTGGATTAAAACCAACC
AGCTCCAGAAAGTCATCCGCACGGGCCGCACAGGTCATTGGCTGAATCAT
TCCAAGGAGCATTGCCTGGTTGGCGTCAAGGGGAATTTTGTTACAACAGG
CCTGCATGGGGCTGCCGGGCGAACCCACCTGAATCGGTACGTGGATTGCG
ATGTAATAGTCGCCGAGGTCAGGGAAACAAGCCGCAAGCCCGATGAGATA
TATGACATAATCGAGCGTATGTGTCCCGGCGCCCGCAAAATCGAGATTTT
TGGCCGCAAGCATAACATCCGCGAAGGTTGGATCACGGTGGGGAATCAAC
TGCCGCCTACCCACTTGATTGGGGAGGCACTCACACGGTTTCGTCGGTGG
GAGGCGGCAAAGCAGGCAAAGGGTCGCTAA

Synonyms

Publications