jgi.p|Nanoce1779_2|524359, mRNA_1892 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|524359
Unique NamemRNA_1892
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1458
Alignment locationscaffold_4:287707..289164 -

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Properties
Property NameValue
TranscriptId524445
TrackFilteredModels2
ProteinId524359
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:287707..289164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524359gene_1892Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1892CDS_1892Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524359mRNA_1892-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1892 ID=mRNA_1892|Name=jgi.p|Nanoce1779_2|524359|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp
ATGAATTATTTGTACGCGGCAAACGAGAGGATACGGGAAGACGGTCGGGA
GATTGATGACTTGGACGAGGGAGGGAGGGAGGAAGGGAAACGGCTGATCC
CAGCCGAACAGTTCGCGAATGCTGCGGTGTCGGCGTTGTCGGTAGAGTCA
CTCTTGCATGACCTAGGGACCTGGAAAGCTTTGAAGGAGGAAAATAAGAA
CAACATCAACAAGAATGTTTTCGCCTTCTGCAGATTCCCTTTCCTCTTGA
GTGCCGAGGCAAAACAGAGGCTGCTGCACGGAGAGGCGGCGTTGGGGCAA
CAGCAGGCGGCCCAAAGGGATCTGATGCGGCAAATGTTTAGTGGGGGTCC
AGTGAGTCCTTTTTTGGTGTTGAGAGTGGATAGGGCAAGATTGTTGGAAA
GCACGCTGGCGCAGATCGGTGTGTGTGATGCAATGATGCTGAAGAAACAG
CTTAAGGTCTCGTTTGTGGGAGAAGAGGGGGTAGACGAAGGTGGGGTGAA
AAAGGAGTTTTTCCAGTTGTTGTGCGCCCAATTGTTTGACTTTACGTATG
GCATGTTTCGGAGCACAGAGAGCGGGAGGGAGGTGTGGTTTAGCCCCTCC
CATGGCCCAAGTTTTGGTTCGGATGACTCGCAGGAGTATCAGTTGGTGGG
GGTACTGGTGGGCCTCGCCATTTATAATTCTGTGCTTCTTGATTTGCATT
TCCCCCTGGTGGCGTACAAGAAGCTTTTGGGGCTCCCTGTGGGTTTTGCG
GATTTGAAGGAGTTGGACGCAGAGATGGGGGAGGGGTTACGGAAGCTGTT
GGAGTGGGAAGAGGAGGGAGGAAGGGAGGGAGGATGCGGAGGAGGAAAGG
TGGAGGATGTTTTTGGGTTGTGCTTTGAAGTGGACTGGATGGAATTTGGG
GAGGTGAGGAGACATGAGTTGATTGAGGGGGGGAGGGAGATAGAGGTGAC
CGCCGCGAATCGACGGGACTATGTGCGGTTGTACGTGGAGTGGGTTTTGG
ACGGGTCAATCAGAAAGAGCTTCATGGACTTCAAGAGTGGCTTTGACAAG
GTGATGGGGGGAAGTTCGATAAGTCTTTTGAAGCCAGAGGAGCTGATGTT
GCTAGTGTGTGGGACGCCGCATATGAATTTAAGGGAGTTGGAGGCGGTGG
CGAGATATGAGGGGGGCTATGATAAAAGCTCGAATGTAATCCAGTGGTTC
TGGGCGGTGGTCCACGAGATGGACCTAACGTCTCAGAGGCAACTTTTGAT
GTTTGTGACGGGAAGCGCCAAGGCTCCTATCGGGGGATTGGGGAAGCTGT
CGTTGCTGATACAGCGGGCGGGGCCAGAATCGGACCATTTGCCAACGGCG
CATACGTGTTTCAACGTGCTGCTGATGCCGGAGTATGGAAGCAAGGAGAA
GTTGAAAGAGAGGTTGATGAAGGCGATCTCGGAGTGTCGGGGTTTTGGGT
TGCAGTAG
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protein sequence of jgi.p|Nanoce1779_2|524359

>mRNA_1892-protein ID=mRNA_1892-protein|Name=jgi.p|Nanoce1779_2|524359|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MNYLYAANERIREDGREIDDLDEGGREEGKRLIPAEQFANAAVSALSVES
LLHDLGTWKALKEENKNNINKNVFAFCRFPFLLSAEAKQRLLHGEAALGQ
QQAAQRDLMRQMFSGGPVSPFLVLRVDRARLLESTLAQIGVCDAMMLKKQ
LKVSFVGEEGVDEGGVKKEFFQLLCAQLFDFTYGMFRSTESGREVWFSPS
HGPSFGSDDSQEYQLVGVLVGLAIYNSVLLDLHFPLVAYKKLLGLPVGFA
DLKELDAEMGEGLRKLLEWEEEGGREGGCGGGKVEDVFGLCFEVDWMEFG
EVRRHELIEGGREIEVTAANRRDYVRLYVEWVLDGSIRKSFMDFKSGFDK
VMGGSSISLLKPEELMLLVCGTPHMNLRELEAVARYEGGYDKSSNVIQWF
WAVVHEMDLTSQRQLLMFVTGSAKAPIGGLGKLSLLIQRAGPESDHLPTA
HTCFNVLLMPEYGSKEKLKERLMKAISECRGFGLQ*
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mRNA from alignment at scaffold_4:287707..289164-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1892 ID=mRNA_1892|Name=jgi.p|Nanoce1779_2|524359|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp|location=Sequence derived from alignment at scaffold_4:287707..289164- (Nannochloropsis oceanica)
ATGAATTATTTGTACGCGGCAAACGAGAGGATACGGGAAGACGGTCGGGA
GATTGATGACTTGGACGAGGGAGGGAGGGAGGAAGGGAAACGGCTGATCC
CAGCCGAACAGTTCGCGAATGCTGCGGTGTCGGCGTTGTCGGTAGAGTCA
CTCTTGCATGACCTAGGGACCTGGAAAGCTTTGAAGGAGGAAAATAAGAA
CAACATCAACAAGAATGTTTTCGCCTTCTGCAGATTCCCTTTCCTCTTGA
GTGCCGAGGCAAAACAGAGGCTGCTGCACGGAGAGGCGGCGTTGGGGCAA
CAGCAGGCGGCCCAAAGGGATCTGATGCGGCAAATGTTTAGTGGGGGTCC
AGTGAGTCCTTTTTTGGTGTTGAGAGTGGATAGGGCAAGATTGTTGGAAA
GCACGCTGGCGCAGATCGGTGTGTGTGATGCAATGATGCTGAAGAAACAG
CTTAAGGTCTCGTTTGTGGGAGAAGAGGGGGTAGACGAAGGTGGGGTGAA
AAAGGAGTTTTTCCAGTTGTTGTGCGCCCAATTGTTTGACTTTACGTATG
GCATGTTTCGGAGCACAGAGAGCGGGAGGGAGGTGTGGTTTAGCCCCTCC
CATGGCCCAAGTTTTGGTTCGGATGACTCGCAGGAGTATCAGTTGGTGGG
GGTACTGGTGGGCCTCGCCATTTATAATTCTGTGCTTCTTGATTTGCATT
TCCCCCTGGTGGCGTACAAGAAGCTTTTGGGGCTCCCTGTGGGTTTTGCG
GATTTGAAGGAGTTGGACGCAGAGATGGGGGAGGGGTTACGGAAGCTGTT
GGAGTGGGAAGAGGAGGGAGGAAGGGAGGGAGGATGCGGAGGAGGAAAGG
TGGAGGATGTTTTTGGGTTGTGCTTTGAAGTGGACTGGATGGAATTTGGG
GAGGTGAGGAGACATGAGTTGATTGAGGGGGGGAGGGAGATAGAGGTGAC
CGCCGCGAATCGACGGGACTATGTGCGGTTGTACGTGGAGTGGGTTTTGG
ACGGGTCAATCAGAAAGAGCTTCATGGACTTCAAGAGTGGCTTTGACAAG
GTGATGGGGGGAAGTTCGATAAGTCTTTTGAAGCCAGAGGAGCTGATGTT
GCTAGTGTGTGGGACGCCGCATATGAATTTAAGGGAGTTGGAGGCGGTGG
CGAGATATGAGGGGGGCTATGATAAAAGCTCGAATGTAATCCAGTGGTTC
TGGGCGGTGGTCCACGAGATGGACCTAACGTCTCAGAGGCAACTTTTGAT
GTTTGTGACGGGAAGCGCCAAGGCTCCTATCGGGGGATTGGGGAAGCTGT
CGTTGCTGATACAGCGGGCGGGGCCAGAATCGGACCATTTGCCAACGGCG
CATACGTGTTTCAACGTGCTGCTGATGCCGGAGTATGGAAGCAAGGAGAA
GTTGAAAGAGAGGTTGATGAAGGCGATCTCGGAGTGTCGGGGTTTTGGGT
TGCAGTAG
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Coding sequence (CDS) from alignment at scaffold_4:287707..289164-

>mRNA_1892 ID=mRNA_1892|Name=jgi.p|Nanoce1779_2|524359|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at scaffold_4:287707..289164- (Nannochloropsis oceanica)
ATGAATTATTTGTACGCGGCAAACGAGAGGATACGGGAAGACGGTCGGGA
GATTGATGACTTGGACGAGGGAGGGAGGGAGGAAGGGAAACGGCTGATCC
CAGCCGAACAGTTCGCGAATGCTGCGGTGTCGGCGTTGTCGGTAGAGTCA
CTCTTGCATGACCTAGGGACCTGGAAAGCTTTGAAGGAGGAAAATAAGAA
CAACATCAACAAGAATGTTTTCGCCTTCTGCAGATTCCCTTTCCTCTTGA
GTGCCGAGGCAAAACAGAGGCTGCTGCACGGAGAGGCGGCGTTGGGGCAA
CAGCAGGCGGCCCAAAGGGATCTGATGCGGCAAATGTTTAGTGGGGGTCC
AGTGAGTCCTTTTTTGGTGTTGAGAGTGGATAGGGCAAGATTGTTGGAAA
GCACGCTGGCGCAGATCGGTGTGTGTGATGCAATGATGCTGAAGAAACAG
CTTAAGGTCTCGTTTGTGGGAGAAGAGGGGGTAGACGAAGGTGGGGTGAA
AAAGGAGTTTTTCCAGTTGTTGTGCGCCCAATTGTTTGACTTTACGTATG
GCATGTTTCGGAGCACAGAGAGCGGGAGGGAGGTGTGGTTTAGCCCCTCC
CATGGCCCAAGTTTTGGTTCGGATGACTCGCAGGAGTATCAGTTGGTGGG
GGTACTGGTGGGCCTCGCCATTTATAATTCTGTGCTTCTTGATTTGCATT
TCCCCCTGGTGGCGTACAAGAAGCTTTTGGGGCTCCCTGTGGGTTTTGCG
GATTTGAAGGAGTTGGACGCAGAGATGGGGGAGGGGTTACGGAAGCTGTT
GGAGTGGGAAGAGGAGGGAGGAAGGGAGGGAGGATGCGGAGGAGGAAAGG
TGGAGGATGTTTTTGGGTTGTGCTTTGAAGTGGACTGGATGGAATTTGGG
GAGGTGAGGAGACATGAGTTGATTGAGGGGGGGAGGGAGATAGAGGTGAC
CGCCGCGAATCGACGGGACTATGTGCGGTTGTACGTGGAGTGGGTTTTGG
ACGGGTCAATCAGAAAGAGCTTCATGGACTTCAAGAGTGGCTTTGACAAG
GTGATGGGGGGAAGTTCGATAAGTCTTTTGAAGCCAGAGGAGCTGATGTT
GCTAGTGTGTGGGACGCCGCATATGAATTTAAGGGAGTTGGAGGCGGTGG
CGAGATATGAGGGGGGCTATGATAAAAGCTCGAATGTAATCCAGTGGTTC
TGGGCGGTGGTCCACGAGATGGACCTAACGTCTCAGAGGCAACTTTTGAT
GTTTGTGACGGGAAGCGCCAAGGCTCCTATCGGGGGATTGGGGAAGCTGT
CGTTGCTGATACAGCGGGCGGGGCCAGAATCGGACCATTTGCCAACGGCG
CATACGTGTTTCAACGTGCTGCTGATGCCGGAGTATGGAAGCAAGGAGAA
GTTGAAAGAGAGGTTGATGAAGGCGATCTCGGAGTGTCGGGGTTTTGGGT
TGCAGTAG
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Synonyms
Publications