Properties
| Property Name | Value |
|---|
| TranscriptId | 579275 |
| Track | FilteredModels2 |
| ProteinId | 579189 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:866579..868925 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2127 ID=mRNA_2127|Name=jgi.p|Nanoce1779_2|579189|organism=Nannochloropsis oceanica|type=mRNA|length=1735bp
AGCAGATAAGTGTGACACCATGGTACGCGGAGGCCGGCGGGGACGGGCTG
GGCAAGGAGCTGGGTGGGTCAACTCTTTCGCAAGACGATGCGACTGGTGC
AAGTTGGGAGGACGACGCAAGCGGCCATCAGCACAGCTACCGTCATCATC
CGTTCCTGCCCTTGAAGTTGCGTGATATTATTGGCTTACTCTTTACGGCG
TTAGGGCTCATGATTGCTGCGGGTGGCGGCATTGGCGGTGGTGGCATCCT
CGTTCCCATCTTCATTCTCGTGATGGGCTTCAGCCCTAAATATGCCATCC
CTTTGTCGAACGTCACGATCCTGGGCGGGTCGATTATGAATATGGTGATG
AATGTTTCTAAGCGTCATCCGTCCGCTGACCGACCACTGGTTGACTGGGA
TTTGATTTTAATCATGGAGCCTCTTACTATTGGAGGGGCGCTTGCGGGCA
GCTTCTTGAACAAGATCCTGCCGGAGTGGCTGCTTGTGGTGGCATTGGTT
ATATTGTTAAGCTACACTGCGCAAACGACGTTGAACAAGGGCCTCAAGGT
TTATCAGAAAGAGAGCGAGGCCAAAGCCAAGGCAGCCCGACCGGAATCCA
AACAACTCAAAGATCTCACCATGGCTGAGAAAGGCGAGGAAGAAGACGAA
GAAAAAACCCTTCTCCTCTCTCCTGACGAGTACGAGAGCCCCGAGGAGAA
CAGCGCTAAGGCTGAGCTCCAGGCCATCATTGAAGGGGAGAAAGCCACTC
CCTGGGTCAAAGTCCGCTTGCTGGTTTTCTGCTTTGTCGTGGTATTGATC
CTCAACGTCTTTAAAGGTGGGGGCTCGTTTCCTTCTCCCTTGGGTGTGGA
ATGCGGGAGTTTCGCTTTTTGGTTCTTGACCTGTATGGTGTTTGCCTGGG
TGGTGGGGGTGTCGCTGTACGTGCGGGGGGATTTGATTAAAATGTATTAT
TTGAAGGCGAAAGTGGGTTATAAATACGCAAAAGGTGACATTGAATGGAA
TGAGTGGGCAACCATTAAGTATCCATGTGTGTGTTTTTTCGCCGGGTTTT
TCGCAGGCATGTTCGGGGTGGGTGGGGGGATTGTGAAGGGCCCTCTGATG
CTTGAAATGGGTGTGGATCCTCGAGTGGCTGCAGCCTCGTCGGCGTGCAT
GATATTGTTTACGTCGTTCACCGCCACGACGAGTTTCTATATCTTCGATT
TGTTGATTTACGATTATGCGGTGTGGTTGTTTTTGATTGGCTTTGTGTTT
ACCTCCGCTGGGCAGTATGGCCTGACGTATTTGATGAAAAAGTCGAACCG
GAATTCTTACATTATATTCTCGATTGGCGCCGTGGTGGGGTTGTCAGCAG
TGTTGATGGGCCTGCAGAGTGTTATTTCTTTGTTTTCGGGACCGGGGGTC
GGAGGTGGGGGAGGAGGTTCGATTTGCGATGCGGTGGAGTAGGATGAAGG
CGGGGTGTAGAGAGAGGGGCTGAGGAAGAGGAAGATGAGAAGGAGGAGCA
GGACTGCGGCACTTGGAAGGAATGGCGGTCACATGTGGAAGGAAGATGTG
GTGTGTGTATGCATTGTATCTGAATTTGCTAGAGGGCAAAGGAGGCAGAT
ATCAGCAGCGACAAGAATCCAGAAGAAACACTGCAGCTGCGGCGGCAGCA
GCAGCAATAACAGCAACAACAACAGCATCAACGAAAGAGCTCACGAGCGA
TCACAAAAGTAATCAACATCAAGACCGATCAGGAA back to topprotein sequence of jgi.p|Nanoce1779_2|579189 >mRNA_2127-protein ID=mRNA_2127-protein|Name=jgi.p|Nanoce1779_2|579189|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MIAAGGGIGGGGILVPIFILVMGFSPKYAIPLSNVTILGGSIMNMVMNVS
KRHPSADRPLVDWDLILIMEPLTIGGALAGSFLNKILPEWLLVVALVILL
SYTAQTTLNKGLKVYQKESEAKAKAARPESKQLKDLTMAEKGEEEDEEKT
LLLSPDEYESPEENSAKAELQAIIEGEKATPWVKVRLLVFCFVVVLILNV
FKGGGSFPSPLGVECGSFAFWFLTCMVFAWVVGVSLYVRGDLIKMYYLKA
KVGYKYAKGDIEWNEWATIKYPCVCFFAGFFAGMFGVGGGIVKGPLMLEM
GVDPRVAAASSACMILFTSFTATTSFYIFDLLIYDYAVWLFLIGFVFTSA
GQYGLTYLMKKSNRNSYIIFSIGAVVGLSAVLMGLQSVISLFSGPGVGGG
GGGSICDAVE* back to topmRNA from alignment at scaffold_4:866579..868925- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2127 ID=mRNA_2127|Name=jgi.p|Nanoce1779_2|579189|organism=Nannochloropsis oceanica|type=mRNA|length=2347bp|location=Sequence derived from alignment at scaffold_4:866579..868925- (Nannochloropsis oceanica)
AGCAGATAAGTGTGACACCATGGTACGCGGAGGCCGGCGGGGACGGGCTG
GGCAAGGAGCTGGGTGGGTCAACTCTTTCGCAAGACGATGCGACTGGTGC
AAGTTGGGAGGACGACGCAAGCGGCCATCAGCACAGCTACCGTCATCATC
CGTTCCTGCCCTTGAAGTTGCGTGATATTATTGGCTTACTCTTTACGGCG
TTAGGGCTCATGATTGCTGCGGGTGGCGGCATTGGTATGTATGGATACAG
AGGACTCGCCAAATCGTATTTGGCGCGGAAGAGACCGTGAGGGTAGGGAA
TGGTAAAGACTTGTGTGCTCGCGCTTTCCGTTTCATTTATGTGCTAGTGC
CTACCTTGCACGAGCTATTCTTTCATCTTGTTTTGTGTCTTGTGTGAATC
ACATGTGCTTCACTTATCATCGCCTTTTCTTCCTCCTCTTTCTCCTCTTC
CTTCTCCCCTCCTTCTAGGCGGTGGTGGCATCCTCGTTCCCATCTTCATT
CTCGTGATGGGCTTCAGCCCTAAATATGCCATCCCTTTGTCGAACGTCAC
GATCCTGGGCGGGTCGATTATGAATATGGTGATGAATGTTTCTAAGCGTC
ATCCGTCCGCTGACCGACCACTGGTTGACTGGGATTTGATTTTAATCATG
GAGCCTCTTACTATTGGAGGGGCGCTTGCGGGCAGCTTCTTGAACAAGAT
CCTGCCGGAGTGGCTGCTTGTGGTGGCATTGGTTATATTGTTAAGCTACA
CTGCGCAAACGACGTTGAACAAGGGCCTCAAGGTTTATCAGAAAGAGAGC
GAGGCCAAAGCCAAGGCAGCGTAAGTATCCGGACTGTTGTGTATGCGCTC
GCCTCACGCTACTGCCATCTCTCCATTTTTCACTTTCTAGATGGCACACT
GTGCTCAATGTAATTCTGGTATCTGATTTGCAGCTGCTTACATCCACCTC
CATCTTCCTCATGCCCCCATTTTCCCCACTCTCTCGTCTCCCCGCTACAA
CACCTCAAAGCCGACCGGAATCCAAACAACTCAAAGATCTCACCATGGCT
GAGAAAGGCGAGGAAGAAGACGAAGAAAAAACCCTTCTCCTCTCTCCTGA
CGAGTACGAGAGCCCCGAGGAGAACAGCGCTAAGGCTGAGCTCCAGGTAA
GTCTTCTTTTTATCACATTTTCTTTTTCCTTGTGTCTCAACCTCATGTCC
ATCTCGCCCTTTGGGGGCCTCTGTCCTTCTGTACTGTCTTCTTCATGCGC
TGTGTAACATGTTTGTCATTTTTTTCCTCGTACTTAAACATTTATCTCTG
CTCCCTGCCGTCCTTTCCCCCCCCCCTCGCTTAGGCCATCATTGAAGGGG
AGAAAGCCACTCCCTGGGTCAAAGTCCGCTTGCTGGTTTTCTGCTTTGTC
GTGGTATTGATCCTCAACGTCTTTAAAGGTGGGGGCTCGTTTCCTTCTCC
CTTGGGTGTGGAATGCGGGAGTTTCGCTTTTTGGTTCTTGACCTGTATGG
TGTTTGCCTGGGTGGTGGGGGTGTCGCTGTACGTGCGGGGGGATTTGATT
AAAATGTATTATTTGAAGGCGAAAGTGGGTTATAAATACGCAAAAGGTGA
CATTGAATGGAATGAGTGGGCAACCATTAAGTATCCATGTGTGTGTTTTT
TCGCCGGGTTTTTCGCAGGCATGTTCGGGGTGGGTGGGGGGATTGTGAAG
GGCCCTCTGATGCTTGAAATGGGTGTGGATCCTCGAGTGGCTGCAGCCTC
GTCGGCGTGCATGATATTGTTTACGTCGTTCACCGCCACGACGAGTTTCT
ATATCTTCGATTTGTTGATTTACGATTATGCGGTGTGGTTGTTTTTGATT
GGCTTTGTGTTTACCTCCGCTGGGCAGTATGGCCTGACGTATTTGATGAA
AAAGTCGAACCGGAATTCTTACATTATATTCTCGATTGGCGCCGTGGTGG
GGTTGTCAGCAGTGTTGATGGGCCTGCAGAGTGTTATTTCTTTGTTTTCG
GGACCGGGGGTCGGAGGTGGGGGAGGAGGTTCGATTTGCGATGCGGTGGA
GTAGGATGAAGGCGGGGTGTAGAGAGAGGGGCTGAGGAAGAGGAAGATGA
GAAGGAGGAGCAGGACTGCGGCACTTGGAAGGAATGGCGGTCACATGTGG
AAGGAAGATGTGGTGTGTGTATGCATTGTATCTGAATTTGCTAGAGGGCA
AAGGAGGCAGATATCAGCAGCGACAAGAATCCAGAAGAAACACTGCAGCT
GCGGCGGCAGCAGCAGCAATAACAGCAACAACAACAGCATCAACGAAAGA
GCTCACGAGCGATCACAAAAGTAATCAACATCAAGACCGATCAGGAA back to topCoding sequence (CDS) from alignment at scaffold_4:866579..868925- >mRNA_2127 ID=mRNA_2127|Name=jgi.p|Nanoce1779_2|579189|organism=Nannochloropsis oceanica|type=CDS|length=4932bp|location=Sequence derived from alignment at scaffold_4:866579..868925- (Nannochloropsis oceanica)
GCCATCATTGAAGGGGAGAAAGCCACTCCCTGGGTCAAAGTCCGCTTGCT
GGTTTTCTGCTTTGTCGTGGTATTGATCCTCAACGTCTTTAAAGGTGGGG
GCTCGTTTCCTTCTCCCTTGGGTGTGGAATGCGGGAGTTTCGCTTTTTGG
TTCTTGACCTGTATGGTGTTTGCCTGGGTGGTGGGGGTGTCGCTGTACGT
GCGGGGGGATTTGATTAAAATGTATTATTTGAAGGCGAAAGTGGGTTATA
AATACGCAAAAGGTGACATTGAATGGAATGAGTGGGCAACCATTAAGTAT
CCATGTGTGTGTTTTTTCGCCGGGTTTTTCGCAGGCATGTTCGGGGTGGG
TGGGGGGATTGTGAAGGGCCCTCTGATGCTTGAAATGGGTGTGGATCCTC
GAGTGGCTGCAGCCTCGTCGGCGTGCATGATATTGTTTACGTCGTTCACC
GCCACGACGAGTTTCTATATCTTCGATTTGTTGATTTACGATTATGCGGT
GTGGTTGTTTTTGATTGGCTTTGTGTTTACCTCCGCTGGGCAGTATGGCC
TGACGTATTTGATGAAAAAGTCGAACCGGAATTCTTACATTATATTCTCG
ATTGGCGCCGTGGTGGGGTTGTCAGCAGTGTTGATGGGCCTGCAGAGTGT
TATTTCTTTGTTTTCGGGACCGGGGGTCGGAGGTGGGGGAGGAGGTTCGA
TTTGCGATGCGGTGGAGTAGCCGACCGGAATCCAAACAACTCAAAGATCT
CACCATGGCTGAGAAAGGCGAGGAAGAAGACGAAGAAAAAACCCTTCTCC
TCTCTCCTGACGAGTACGAGAGCCCCGAGGAGAACAGCGCTAAGGCTGAG
CTCCAGGCGGTGGTGGCATCCTCGTTCCCATCTTCATTCTCGTGATGGGC
TTCAGCCCTAAATATGCCATCCCTTTGTCGAACGTCACGATCCTGGGCGG
GTCGATTATGAATATGGTGATGAATGTTTCTAAGCGTCATCCGTCCGCTG
ACCGACCACTGGTTGACTGGGATTTGATTTTAATCATGGAGCCTCTTACT
ATTGGAGGGGCGCTTGCGGGCAGCTTCTTGAACAAGATCCTGCCGGAGTG
GCTGCTTGTGGTGGCATTGGTTATATTGTTAAGCTACACTGCGCAAACGA
CGTTGAACAAGGGCCTCAAGGTTTATCAGAAAGAGAGCGAGGCCAAAGCC
AAGGCAGCATGATTGCTGCGGGTGGCGGCATTGGCCATCATTGAAGGGGA
GAAAGCCACTCCCTGGGTCAAAGTCCGCTTGCTGGTTTTCTGCTTTGTCG
TGGTATTGATCCTCAACGTCTTTAAAGGTGGGGGCTCGTTTCCTTCTCCC
TTGGGTGTGGAATGCGGGAGTTTCGCTTTTTGGTTCTTGACCTGTATGGT
GTTTGCCTGGGTGGTGGGGGTGTCGCTGTACGTGCGGGGGGATTTGATTA
AAATGTATTATTTGAAGGCGAAAGTGGGTTATAAATACGCAAAAGGTGAC
ATTGAATGGAATGAGTGGGCAACCATTAAGTATCCATGTGTGTGTTTTTT
CGCCGGGTTTTTCGCAGGCATGTTCGGGGTGGGTGGGGGGATTGTGAAGG
GCCCTCTGATGCTTGAAATGGGTGTGGATCCTCGAGTGGCTGCAGCCTCG
TCGGCGTGCATGATATTGTTTACGTCGTTCACCGCCACGACGAGTTTCTA
TATCTTCGATTTGTTGATTTACGATTATGCGGTGTGGTTGTTTTTGATTG
GCTTTGTGTTTACCTCCGCTGGGCAGTATGGCCTGACGTATTTGATGAAA
AAGTCGAACCGGAATTCTTACATTATATTCTCGATTGGCGCCGTGGTGGG
GTTGTCAGCAGTGTTGATGGGCCTGCAGAGTGTTATTTCTTTGTTTTCGG
GACCGGGGGTCGGAGGTGGGGGAGGAGGTTCGATTTGCGATGCGGTGGAG
TAGCCGACCGGAATCCAAACAACTCAAAGATCTCACCATGGCTGAGAAAG
GCGAGGAAGAAGACGAAGAAAAAACCCTTCTCCTCTCTCCTGACGAGTAC
GAGAGCCCCGAGGAGAACAGCGCTAAGGCTGAGCTCCAGGCGGTGGTGGC
ATCCTCGTTCCCATCTTCATTCTCGTGATGGGCTTCAGCCCTAAATATGC
CATCCCTTTGTCGAACGTCACGATCCTGGGCGGGTCGATTATGAATATGG
TGATGAATGTTTCTAAGCGTCATCCGTCCGCTGACCGACCACTGGTTGAC
TGGGATTTGATTTTAATCATGGAGCCTCTTACTATTGGAGGGGCGCTTGC
GGGCAGCTTCTTGAACAAGATCCTGCCGGAGTGGCTGCTTGTGGTGGCAT
TGGTTATATTGTTAAGCTACACTGCGCAAACGACGTTGAACAAGGGCCTC
AAGGTTTATCAGAAAGAGAGCGAGGCCAAAGCCAAGGCAGCATGATTGCT
GCGGGTGGCGGCATTGGCCATCATTGAAGGGGAGAAAGCCACTCCCTGGG
TCAAAGTCCGCTTGCTGGTTTTCTGCTTTGTCGTGGTATTGATCCTCAAC
GTCTTTAAAGGTGGGGGCTCGTTTCCTTCTCCCTTGGGTGTGGAATGCGG
GAGTTTCGCTTTTTGGTTCTTGACCTGTATGGTGTTTGCCTGGGTGGTGG
GGGTGTCGCTGTACGTGCGGGGGGATTTGATTAAAATGTATTATTTGAAG
GCGAAAGTGGGTTATAAATACGCAAAAGGTGACATTGAATGGAATGAGTG
GGCAACCATTAAGTATCCATGTGTGTGTTTTTTCGCCGGGTTTTTCGCAG
GCATGTTCGGGGTGGGTGGGGGGATTGTGAAGGGCCCTCTGATGCTTGAA
ATGGGTGTGGATCCTCGAGTGGCTGCAGCCTCGTCGGCGTGCATGATATT
GTTTACGTCGTTCACCGCCACGACGAGTTTCTATATCTTCGATTTGTTGA
TTTACGATTATGCGGTGTGGTTGTTTTTGATTGGCTTTGTGTTTACCTCC
GCTGGGCAGTATGGCCTGACGTATTTGATGAAAAAGTCGAACCGGAATTC
TTACATTATATTCTCGATTGGCGCCGTGGTGGGGTTGTCAGCAGTGTTGA
TGGGCCTGCAGAGTGTTATTTCTTTGTTTTCGGGACCGGGGGTCGGAGGT
GGGGGAGGAGGTTCGATTTGCGATGCGGTGGAGTAGCCGACCGGAATCCA
AACAACTCAAAGATCTCACCATGGCTGAGAAAGGCGAGGAAGAAGACGAA
GAAAAAACCCTTCTCCTCTCTCCTGACGAGTACGAGAGCCCCGAGGAGAA
CAGCGCTAAGGCTGAGCTCCAGGCGGTGGTGGCATCCTCGTTCCCATCTT
CATTCTCGTGATGGGCTTCAGCCCTAAATATGCCATCCCTTTGTCGAACG
TCACGATCCTGGGCGGGTCGATTATGAATATGGTGATGAATGTTTCTAAG
CGTCATCCGTCCGCTGACCGACCACTGGTTGACTGGGATTTGATTTTAAT
CATGGAGCCTCTTACTATTGGAGGGGCGCTTGCGGGCAGCTTCTTGAACA
AGATCCTGCCGGAGTGGCTGCTTGTGGTGGCATTGGTTATATTGTTAAGC
TACACTGCGCAAACGACGTTGAACAAGGGCCTCAAGGTTTATCAGAAAGA
GAGCGAGGCCAAAGCCAAGGCAGCATGATTGCTGCGGGTGGCGGCATTGG
CCATCATTGAAGGGGAGAAAGCCACTCCCTGGGTCAAAGTCCGCTTGCTG
GTTTTCTGCTTTGTCGTGGTATTGATCCTCAACGTCTTTAAAGGTGGGGG
CTCGTTTCCTTCTCCCTTGGGTGTGGAATGCGGGAGTTTCGCTTTTTGGT
TCTTGACCTGTATGGTGTTTGCCTGGGTGGTGGGGGTGTCGCTGTACGTG
CGGGGGGATTTGATTAAAATGTATTATTTGAAGGCGAAAGTGGGTTATAA
ATACGCAAAAGGTGACATTGAATGGAATGAGTGGGCAACCATTAAGTATC
CATGTGTGTGTTTTTTCGCCGGGTTTTTCGCAGGCATGTTCGGGGTGGGT
GGGGGGATTGTGAAGGGCCCTCTGATGCTTGAAATGGGTGTGGATCCTCG
AGTGGCTGCAGCCTCGTCGGCGTGCATGATATTGTTTACGTCGTTCACCG
CCACGACGAGTTTCTATATCTTCGATTTGTTGATTTACGATTATGCGGTG
TGGTTGTTTTTGATTGGCTTTGTGTTTACCTCCGCTGGGCAGTATGGCCT
GACGTATTTGATGAAAAAGTCGAACCGGAATTCTTACATTATATTCTCGA
TTGGCGCCGTGGTGGGGTTGTCAGCAGTGTTGATGGGCCTGCAGAGTGTT
ATTTCTTTGTTTTCGGGACCGGGGGTCGGAGGTGGGGGAGGAGGTTCGAT
TTGCGATGCGGTGGAGTAGCCGACCGGAATCCAAACAACTCAAAGATCTC
ACCATGGCTGAGAAAGGCGAGGAAGAAGACGAAGAAAAAACCCTTCTCCT
CTCTCCTGACGAGTACGAGAGCCCCGAGGAGAACAGCGCTAAGGCTGAGC
TCCAGGCGGTGGTGGCATCCTCGTTCCCATCTTCATTCTCGTGATGGGCT
TCAGCCCTAAATATGCCATCCCTTTGTCGAACGTCACGATCCTGGGCGGG
TCGATTATGAATATGGTGATGAATGTTTCTAAGCGTCATCCGTCCGCTGA
CCGACCACTGGTTGACTGGGATTTGATTTTAATCATGGAGCCTCTTACTA
TTGGAGGGGCGCTTGCGGGCAGCTTCTTGAACAAGATCCTGCCGGAGTGG
CTGCTTGTGGTGGCATTGGTTATATTGTTAAGCTACACTGCGCAAACGAC
GTTGAACAAGGGCCTCAAGGTTTATCAGAAAGAGAGCGAGGCCAAAGCCA
AGGCAGCATGATTGCTGCGGGTGGCGGCATTG back to top
|