jgi.p|Nanoce1779_2|579572, mRNA_2235 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579572
Unique NamemRNA_2235
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length989
Alignment locationscaffold_4:1133125..1134494 -

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Properties
Property NameValue
TranscriptId579658
TrackFilteredModels2
ProteinId579572
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1133125..1134494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579572gene_2235Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579572mRNA_2235-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2235CDS_2235Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2235 ID=mRNA_2235|Name=jgi.p|Nanoce1779_2|579572|organism=Nannochloropsis oceanica|type=mRNA|length=989bp
ACAGACACACGCCCACTTCGTCTACTGCTAAGCGTTAAGCACTTATGTCG
GAAGAGAAGTACTTGATCTTCGGGAAGAACGGATGGATCGGGGGAAAGCT
CATCGACCTGCTTAAGCAGCAAGGCAAAACGGTGGTGTTGGGCCAGTCCC
GCCTCGAGAACCGCGAGGCGCTCTTCGCAGAGCTGGACGACGTTAAGCCG
ACCCACGTCTTGGACGCAGCAGGCGTGACGGGCCGCCCGAATATTGATTG
GTGCGAGACGCACCAGGTGGAAACGATTCGTACGAATGTCATAGGAACGT
TGAATCTGGCGGAGGGATGCCATCTGAAGGGGATTCACATGACGTTGTAT
GCCACGGGATGTATTTTTGAGTACGACGAGAAGCACCCTATCGGCGGCCC
GGGTTTCACGGAGGAGGACTCGCCTAACTTCTTCGGGTCATTCTATAGTA
AGACTAAGGCCTATATGGAGGACATGTTGAAGAGCTACAAGAACGTGTGC
ATCTTGCGGGTGCGCATGCCCATCTCTGATGACCTCAATCCCCGTAATTT
TGTCACCAAAATTGTGAGCTACGACCGCGTGGTGGACGTACCTAACTCCA
TGACGGTACTGACGGACCTCTTGCCAATCTCCTTAATTATGAGCCAGCGC
AAGCTCACAGGCATCTACAATTTCACCAACCCCGGCGCCATCTCTCACAA
CCAAATTCTGACCCTGTACAAGAAGCATGTCGACCCGTCCTACACCTGGC
AGAATTTCACGATCGAGGAACAAAACAAGATTCTTGCCGCCAAGCGCTCC
AACAATGAGCTGGACACGACCAAGTTCTGTGCCGCGCTTCCCGATATTCA
AATTCCAGATATCCATGCAGCCTGCGAAGGGGTGCGTACCCCTCCCTCCC
TCCCTTCCTCCCTCCCCGTTTCCCTCCTCTCCTTGGGCGCCGAATGACCG
CATGACCAAGTATTGTGCCATGCTACCCGGGTATAAAGG
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protein sequence of jgi.p|Nanoce1779_2|579572

>mRNA_2235-protein ID=mRNA_2235-protein|Name=jgi.p|Nanoce1779_2|579572|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MSEEKYLIFGKNGWIGGKLIDLLKQQGKTVVLGQSRLENREALFAELDDV
KPTHVLDAAGVTGRPNIDWCETHQVETIRTNVIGTLNLAEGCHLKGIHMT
LYATGCIFEYDEKHPIGGPGFTEEDSPNFFGSFYSKTKAYMEDMLKSYKN
VCILRVRMPISDDLNPRNFVTKIVSYDRVVDVPNSMTVLTDLLPISLIMS
QRKLTGIYNFTNPGAISHNQILTLYKKHVDPSYTWQNFTIEEQNKILAAK
RSNNELDTTKFCAALPDIQIPDIHAACEGVRTPPSLPSSLPVSLLSLGAE
*
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mRNA from alignment at scaffold_4:1133125..1134494-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2235 ID=mRNA_2235|Name=jgi.p|Nanoce1779_2|579572|organism=Nannochloropsis oceanica|type=mRNA|length=1370bp|location=Sequence derived from alignment at scaffold_4:1133125..1134494- (Nannochloropsis oceanica)
ACAGACACACGCCCACTTCGTCTACTGCTAAGCGTTAAGCACTTATGTCG GAAGAGGTATGTGCGGGATGTGGTATTTTGGGTCAGGTTCTGTGGGCCGT GTCCCTCTCATCTTGATTTGTCCCATCTTCTTCATCCACGCGAGTAACTA CTATCACAACGCACTCGCTCACTCTCTGCCCATACCCCACGCCGAGCAGA AGTACTTGATCTTCGGGAAGAACGGATGGATCGGGGGAAAGCTCATCGAC CTGCTTAAGCAGCAAGGCAAAACGGTGGTGTTGGGCCAGTCCCGCCTCGA GAACCGCGAGGCGCTCTTCGCAGAGCTGGACGACGTTAAGCCGACCCACG TCTTGGACGCAGCAGGCGTGACGGGCCGCCCGAATATTGATTGGTGCGAG ACGCACCAGGTGGAAACGATTCGTACGAATGTCATAGGAACGTTGAATCT GGCGGAGGGATGCCATCTGAAGGGGATTCACATGACGTTGTATGCCACGG GATGTATTTTTGAGTACGACGAGAAGCACCCTATCGGCGGCCCGGGTTTC ACGGAGGAGGACTCGCCTAACTTCTTCGGGTCATTCTATAGTAAGACTAA GGCCTATATGGAGGACATGTTGAAGAGCTACAAGAACGTGTGCATCTTGC GGGTGCGCATGCCCATCTCTGATGACCTCAATCCCCGTAATTTTGTCACC AAAATTGTGAGCTACGACCGCGTGGTGGACGTACCTAACTCCATGACGGT ACTGACGGACCTCTTGCCAATCTCCTTAATTATGAGCCAGCGCAAGCTCA CAGGTACGTGGGGAGGGAGGAAGGGAGGGAAGGAGGGAGGGATAGAGGGA AGGAGGGGACTTGGAAGATGTGAGGGTGTATGGCTCACTCCCCCTCTCTC CCTCCCTCTCTTCCTCTCTCTCAAGGCATCTACAATTTCACCAACCCCGG CGCCATCTCTCACAACCAAATTCTGACCCTGTACAAGAAGCATGTCGACC CGTCCTACACCTGGCAGAATTTCACGGTACGTTTCTCCCCCCCTCCCCCT CTCCCTCCCTCCCTCCCCCCCCTCGGCTTTTACTTCTCCTGACCCCTCCC TCCTCCCTCTTCCTCCCCTCCCTCCTTCCCCTCCTCCTTCAGATCGAGGA ACAAAACAAGATTCTTGCCGCCAAGCGCTCCAACAATGAGCTGGACACGA CCAAGTTCTGTGCCGCGCTTCCCGATATTCAAATTCCAGATATCCATGCA GCCTGCGAAGGGGTGCGTACCCCTCCCTCCCTCCCTTCCTCCCTCCCCGT TTCCCTCCTCTCCTTGGGCGCCGAATGACCGCATGACCAAGTATTGTGCC ATGCTACCCGGGTATAAAGG
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Coding sequence (CDS) from alignment at scaffold_4:1133125..1134494-

>mRNA_2235 ID=mRNA_2235|Name=jgi.p|Nanoce1779_2|579572|organism=Nannochloropsis oceanica|type=CDS|length=3612bp|location=Sequence derived from alignment at scaffold_4:1133125..1134494- (Nannochloropsis oceanica)
ATCGAGGAACAAAACAAGATTCTTGCCGCCAAGCGCTCCAACAATGAGCT
GGACACGACCAAGTTCTGTGCCGCGCTTCCCGATATTCAAATTCCAGATA
TCCATGCAGCCTGCGAAGGGGTGCGTACCCCTCCCTCCCTCCCTTCCTCC
CTCCCCGTTTCCCTCCTCTCCTTGGGCGCCGAATGAGCATCTACAATTTC
ACCAACCCCGGCGCCATCTCTCACAACCAAATTCTGACCCTGTACAAGAA
GCATGTCGACCCGTCCTACACCTGGCAGAATTTCACGAAGTACTTGATCT
TCGGGAAGAACGGATGGATCGGGGGAAAGCTCATCGACCTGCTTAAGCAG
CAAGGCAAAACGGTGGTGTTGGGCCAGTCCCGCCTCGAGAACCGCGAGGC
GCTCTTCGCAGAGCTGGACGACGTTAAGCCGACCCACGTCTTGGACGCAG
CAGGCGTGACGGGCCGCCCGAATATTGATTGGTGCGAGACGCACCAGGTG
GAAACGATTCGTACGAATGTCATAGGAACGTTGAATCTGGCGGAGGGATG
CCATCTGAAGGGGATTCACATGACGTTGTATGCCACGGGATGTATTTTTG
AGTACGACGAGAAGCACCCTATCGGCGGCCCGGGTTTCACGGAGGAGGAC
TCGCCTAACTTCTTCGGGTCATTCTATAGTAAGACTAAGGCCTATATGGA
GGACATGTTGAAGAGCTACAAGAACGTGTGCATCTTGCGGGTGCGCATGC
CCATCTCTGATGACCTCAATCCCCGTAATTTTGTCACCAAAATTGTGAGC
TACGACCGCGTGGTGGACGTACCTAACTCCATGACGGTACTGACGGACCT
CTTGCCAATCTCCTTAATTATGAGCCAGCGCAAGCTCACAGATGTCGGAA
GAGATCGAGGAACAAAACAAGATTCTTGCCGCCAAGCGCTCCAACAATGA
GCTGGACACGACCAAGTTCTGTGCCGCGCTTCCCGATATTCAAATTCCAG
ATATCCATGCAGCCTGCGAAGGGGTGCGTACCCCTCCCTCCCTCCCTTCC
TCCCTCCCCGTTTCCCTCCTCTCCTTGGGCGCCGAATGAGCATCTACAAT
TTCACCAACCCCGGCGCCATCTCTCACAACCAAATTCTGACCCTGTACAA
GAAGCATGTCGACCCGTCCTACACCTGGCAGAATTTCACGAAGTACTTGA
TCTTCGGGAAGAACGGATGGATCGGGGGAAAGCTCATCGACCTGCTTAAG
CAGCAAGGCAAAACGGTGGTGTTGGGCCAGTCCCGCCTCGAGAACCGCGA
GGCGCTCTTCGCAGAGCTGGACGACGTTAAGCCGACCCACGTCTTGGACG
CAGCAGGCGTGACGGGCCGCCCGAATATTGATTGGTGCGAGACGCACCAG
GTGGAAACGATTCGTACGAATGTCATAGGAACGTTGAATCTGGCGGAGGG
ATGCCATCTGAAGGGGATTCACATGACGTTGTATGCCACGGGATGTATTT
TTGAGTACGACGAGAAGCACCCTATCGGCGGCCCGGGTTTCACGGAGGAG
GACTCGCCTAACTTCTTCGGGTCATTCTATAGTAAGACTAAGGCCTATAT
GGAGGACATGTTGAAGAGCTACAAGAACGTGTGCATCTTGCGGGTGCGCA
TGCCCATCTCTGATGACCTCAATCCCCGTAATTTTGTCACCAAAATTGTG
AGCTACGACCGCGTGGTGGACGTACCTAACTCCATGACGGTACTGACGGA
CCTCTTGCCAATCTCCTTAATTATGAGCCAGCGCAAGCTCACAGATGTCG
GAAGAGATCGAGGAACAAAACAAGATTCTTGCCGCCAAGCGCTCCAACAA
TGAGCTGGACACGACCAAGTTCTGTGCCGCGCTTCCCGATATTCAAATTC
CAGATATCCATGCAGCCTGCGAAGGGGTGCGTACCCCTCCCTCCCTCCCT
TCCTCCCTCCCCGTTTCCCTCCTCTCCTTGGGCGCCGAATGAGCATCTAC
AATTTCACCAACCCCGGCGCCATCTCTCACAACCAAATTCTGACCCTGTA
CAAGAAGCATGTCGACCCGTCCTACACCTGGCAGAATTTCACGAAGTACT
TGATCTTCGGGAAGAACGGATGGATCGGGGGAAAGCTCATCGACCTGCTT
AAGCAGCAAGGCAAAACGGTGGTGTTGGGCCAGTCCCGCCTCGAGAACCG
CGAGGCGCTCTTCGCAGAGCTGGACGACGTTAAGCCGACCCACGTCTTGG
ACGCAGCAGGCGTGACGGGCCGCCCGAATATTGATTGGTGCGAGACGCAC
CAGGTGGAAACGATTCGTACGAATGTCATAGGAACGTTGAATCTGGCGGA
GGGATGCCATCTGAAGGGGATTCACATGACGTTGTATGCCACGGGATGTA
TTTTTGAGTACGACGAGAAGCACCCTATCGGCGGCCCGGGTTTCACGGAG
GAGGACTCGCCTAACTTCTTCGGGTCATTCTATAGTAAGACTAAGGCCTA
TATGGAGGACATGTTGAAGAGCTACAAGAACGTGTGCATCTTGCGGGTGC
GCATGCCCATCTCTGATGACCTCAATCCCCGTAATTTTGTCACCAAAATT
GTGAGCTACGACCGCGTGGTGGACGTACCTAACTCCATGACGGTACTGAC
GGACCTCTTGCCAATCTCCTTAATTATGAGCCAGCGCAAGCTCACAGATG
TCGGAAGAGATCGAGGAACAAAACAAGATTCTTGCCGCCAAGCGCTCCAA
CAATGAGCTGGACACGACCAAGTTCTGTGCCGCGCTTCCCGATATTCAAA
TTCCAGATATCCATGCAGCCTGCGAAGGGGTGCGTACCCCTCCCTCCCTC
CCTTCCTCCCTCCCCGTTTCCCTCCTCTCCTTGGGCGCCGAATGAGCATC
TACAATTTCACCAACCCCGGCGCCATCTCTCACAACCAAATTCTGACCCT
GTACAAGAAGCATGTCGACCCGTCCTACACCTGGCAGAATTTCACGAAGT
ACTTGATCTTCGGGAAGAACGGATGGATCGGGGGAAAGCTCATCGACCTG
CTTAAGCAGCAAGGCAAAACGGTGGTGTTGGGCCAGTCCCGCCTCGAGAA
CCGCGAGGCGCTCTTCGCAGAGCTGGACGACGTTAAGCCGACCCACGTCT
TGGACGCAGCAGGCGTGACGGGCCGCCCGAATATTGATTGGTGCGAGACG
CACCAGGTGGAAACGATTCGTACGAATGTCATAGGAACGTTGAATCTGGC
GGAGGGATGCCATCTGAAGGGGATTCACATGACGTTGTATGCCACGGGAT
GTATTTTTGAGTACGACGAGAAGCACCCTATCGGCGGCCCGGGTTTCACG
GAGGAGGACTCGCCTAACTTCTTCGGGTCATTCTATAGTAAGACTAAGGC
CTATATGGAGGACATGTTGAAGAGCTACAAGAACGTGTGCATCTTGCGGG
TGCGCATGCCCATCTCTGATGACCTCAATCCCCGTAATTTTGTCACCAAA
ATTGTGAGCTACGACCGCGTGGTGGACGTACCTAACTCCATGACGGTACT
GACGGACCTCTTGCCAATCTCCTTAATTATGAGCCAGCGCAAGCTCACAG
ATGTCGGAAGAG
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Synonyms
Publications