jgi.p|Nanoce1779_2|659677, mRNA_1899 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|659677
Unique NamemRNA_1899
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1583
Alignment locationscaffold_4:302383..303965 +

Link to JBrowse

Properties
Property NameValue
TranscriptId659763
TrackFilteredModels2
ProteinId659677
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:302383..303965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|659677gene_1899Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|659677mRNA_1899-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1899CDS_1899Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1899 ID=mRNA_1899|Name=jgi.p|Nanoce1779_2|659677|organism=Nannochloropsis oceanica|type=mRNA|length=1583bp
AGAAAAGGTCCAAAATGCAGCCGCAGGCTTTGTCTCGTATTCTGCACCTC
GCTCCCTTGCTCCTCGCCCTCATACCCACTTCCACAAGCGCCAGCGACGT
CCTTTTCGAGGCCACCAATTTTGCCACGCCGCCATCCAACGAGCCCCACT
TTGCGGGTGCGACGGCCTTGGTGCCACATCCCAGCAAACTTTACCAGTTC
TTGGATAAGATGTACCCTTTCCTCGCTCCACTGCCCCCGGACCGCGGCAA
AGGTGGCTCCAAGTGGCCCAGATGTGCCTGGCAGGTGGCGACGGAGCCGA
GTGCTTCGAGCTTTGGCCTACTGGACTTGAATGCATTTTACCACACTCTA
GTCATTTGGGACTTCCACGACTCCGATGTTTATCGGATCAAGGGGCGTTT
TCCTGCCGCGCGGTACTTTTCCATTCAGAGCTATGAGTTTAGCAACGGAA
AGGCCATTGCGTCCATGCTGGACCGCGACATTCGACCTGCGACGGGCAAA
AACCCTTACAACGATCTGAGCGCCTCTCCTGCTCACCGCGGAACGTTTGA
CATCTACTTAACGGCGCACGGCAATCAAGGGCTGCCCAATGAATTGCAGG
TCAAGCGGCCCGGGAATCACTTAGAAGAGAAAGAGCCCGTGACAATCATC
TATCGGATGTACGACGCAGACGTATACGCAGCTCGGGGAGACGAAGGGGC
ATGGACTCCCAAGCAACAGTTTTGGGGCTTTACCGACCCAGCGGTGGTGG
AGCATCGAACACATGACGGCCGATGGACAGAGGTCCCGGCTTGCACTGAC
TTCGGCTCAGCTTTGTTTCAGGCCACTTTTACGGATTTGTACCCCGTATT
AAAGCATTTTCCTGCCACAGCCGCCTCGTGTCCAATGGCGCAACTATCGG
ACGATGTGTTTCCATCCATGATTCTATTCGGCGCTGGCCTGGAGCAGGGC
TATGCGGCCAGCATTACTAGCTATACGAACTACGATACGAGATATCTGTA
TTGGTGCGCACAAGAAGCCAAGATGGGGCCGAATATGGTGATCCGCATGC
AAGGGAAGCTCCCGCGTGTTCCCCAGGGCCTATATAGCGGTGAAAGATTA
CCGCGCGTGGCTCAATCCGAACTTTATGATGCTCGCTATATCTCTATTAG
CACCATTGACATGCTTTTCCCGTCCCCGACCTACCAAGAAGTTGAAGACC
ACGATATCGAGCGTTTCTATTCAGAAGTACCGGGCTGGGCAGAACATGAT
CGAACGTACTCTATTATATTTTCCATAGATCAAAAGGTGGCATTGGCTTG
TAATTTATATGATGCCGACACACAATTGTTCCTGGCTTGGGACGACGCTT
ACGACTATGGCCTAGGACCCACACGCATGCCCTCGATTGTGTATCGCGAG
CTTTTGCCAACGCCGGCGGCAGGTGGGAGGTCTTTGAAAGATGTTGACAA
AGCATGTCACGCCGTTGAAAAGACGGCGTGTGGGGACGGGAGTTTCATAC
GGGGCGTCATGGGTGATATTTATCCACGAATCGATGTATTTGAATGTGAC
CCGACAACGGGGATCGCGACTTTACTTGCTTGA
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protein sequence of jgi.p|Nanoce1779_2|659677

>mRNA_1899-protein ID=mRNA_1899-protein|Name=jgi.p|Nanoce1779_2|659677|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MQPQALSRILHLAPLLLALIPTSTSASDVLFEATNFATPPSNEPHFAGAT
ALVPHPSKLYQFLDKMYPFLAPLPPDRGKGGSKWPRCAWQVATEPSASSF
GLLDLNAFYHTLVIWDFHDSDVYRIKGRFPAARYFSIQSYEFSNGKAIAS
MLDRDIRPATGKNPYNDLSASPAHRGTFDIYLTAHGNQGLPNELQVKRPG
NHLEEKEPVTIIYRMYDADVYAARGDEGAWTPKQQFWGFTDPAVVEHRTH
DGRWTEVPACTDFGSALFQATFTDLYPVLKHFPATAASCPMAQLSDDVFP
SMILFGAGLEQGYAASITSYTNYDTRYLYWCAQEAKMGPNMVIRMQGKLP
RVPQGLYSGERLPRVAQSELYDARYISISTIDMLFPSPTYQEVEDHDIER
FYSEVPGWAEHDRTYSIIFSIDQKVALACNLYDADTQLFLAWDDAYDYGL
GPTRMPSIVYRELLPTPAAGGRSLKDVDKACHAVEKTACGDGSFIRGVMG
DIYPRIDVFECDPTTGIATLLA*
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mRNA from alignment at scaffold_4:302383..303965+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1899 ID=mRNA_1899|Name=jgi.p|Nanoce1779_2|659677|organism=Nannochloropsis oceanica|type=mRNA|length=1583bp|location=Sequence derived from alignment at scaffold_4:302383..303965+ (Nannochloropsis oceanica)
AGAAAAGGTCCAAAATGCAGCCGCAGGCTTTGTCTCGTATTCTGCACCTC
GCTCCCTTGCTCCTCGCCCTCATACCCACTTCCACAAGCGCCAGCGACGT
CCTTTTCGAGGCCACCAATTTTGCCACGCCGCCATCCAACGAGCCCCACT
TTGCGGGTGCGACGGCCTTGGTGCCACATCCCAGCAAACTTTACCAGTTC
TTGGATAAGATGTACCCTTTCCTCGCTCCACTGCCCCCGGACCGCGGCAA
AGGTGGCTCCAAGTGGCCCAGATGTGCCTGGCAGGTGGCGACGGAGCCGA
GTGCTTCGAGCTTTGGCCTACTGGACTTGAATGCATTTTACCACACTCTA
GTCATTTGGGACTTCCACGACTCCGATGTTTATCGGATCAAGGGGCGTTT
TCCTGCCGCGCGGTACTTTTCCATTCAGAGCTATGAGTTTAGCAACGGAA
AGGCCATTGCGTCCATGCTGGACCGCGACATTCGACCTGCGACGGGCAAA
AACCCTTACAACGATCTGAGCGCCTCTCCTGCTCACCGCGGAACGTTTGA
CATCTACTTAACGGCGCACGGCAATCAAGGGCTGCCCAATGAATTGCAGG
TCAAGCGGCCCGGGAATCACTTAGAAGAGAAAGAGCCCGTGACAATCATC
TATCGGATGTACGACGCAGACGTATACGCAGCTCGGGGAGACGAAGGGGC
ATGGACTCCCAAGCAACAGTTTTGGGGCTTTACCGACCCAGCGGTGGTGG
AGCATCGAACACATGACGGCCGATGGACAGAGGTCCCGGCTTGCACTGAC
TTCGGCTCAGCTTTGTTTCAGGCCACTTTTACGGATTTGTACCCCGTATT
AAAGCATTTTCCTGCCACAGCCGCCTCGTGTCCAATGGCGCAACTATCGG
ACGATGTGTTTCCATCCATGATTCTATTCGGCGCTGGCCTGGAGCAGGGC
TATGCGGCCAGCATTACTAGCTATACGAACTACGATACGAGATATCTGTA
TTGGTGCGCACAAGAAGCCAAGATGGGGCCGAATATGGTGATCCGCATGC
AAGGGAAGCTCCCGCGTGTTCCCCAGGGCCTATATAGCGGTGAAAGATTA
CCGCGCGTGGCTCAATCCGAACTTTATGATGCTCGCTATATCTCTATTAG
CACCATTGACATGCTTTTCCCGTCCCCGACCTACCAAGAAGTTGAAGACC
ACGATATCGAGCGTTTCTATTCAGAAGTACCGGGCTGGGCAGAACATGAT
CGAACGTACTCTATTATATTTTCCATAGATCAAAAGGTGGCATTGGCTTG
TAATTTATATGATGCCGACACACAATTGTTCCTGGCTTGGGACGACGCTT
ACGACTATGGCCTAGGACCCACACGCATGCCCTCGATTGTGTATCGCGAG
CTTTTGCCAACGCCGGCGGCAGGTGGGAGGTCTTTGAAAGATGTTGACAA
AGCATGTCACGCCGTTGAAAAGACGGCGTGTGGGGACGGGAGTTTCATAC
GGGGCGTCATGGGTGATATTTATCCACGAATCGATGTATTTGAATGTGAC
CCGACAACGGGGATCGCGACTTTACTTGCTTGA
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Coding sequence (CDS) from alignment at scaffold_4:302383..303965+

>mRNA_1899 ID=mRNA_1899|Name=jgi.p|Nanoce1779_2|659677|organism=Nannochloropsis oceanica|type=CDS|length=1569bp|location=Sequence derived from alignment at scaffold_4:302383..303965+ (Nannochloropsis oceanica)
ATGCAGCCGCAGGCTTTGTCTCGTATTCTGCACCTCGCTCCCTTGCTCCT
CGCCCTCATACCCACTTCCACAAGCGCCAGCGACGTCCTTTTCGAGGCCA
CCAATTTTGCCACGCCGCCATCCAACGAGCCCCACTTTGCGGGTGCGACG
GCCTTGGTGCCACATCCCAGCAAACTTTACCAGTTCTTGGATAAGATGTA
CCCTTTCCTCGCTCCACTGCCCCCGGACCGCGGCAAAGGTGGCTCCAAGT
GGCCCAGATGTGCCTGGCAGGTGGCGACGGAGCCGAGTGCTTCGAGCTTT
GGCCTACTGGACTTGAATGCATTTTACCACACTCTAGTCATTTGGGACTT
CCACGACTCCGATGTTTATCGGATCAAGGGGCGTTTTCCTGCCGCGCGGT
ACTTTTCCATTCAGAGCTATGAGTTTAGCAACGGAAAGGCCATTGCGTCC
ATGCTGGACCGCGACATTCGACCTGCGACGGGCAAAAACCCTTACAACGA
TCTGAGCGCCTCTCCTGCTCACCGCGGAACGTTTGACATCTACTTAACGG
CGCACGGCAATCAAGGGCTGCCCAATGAATTGCAGGTCAAGCGGCCCGGG
AATCACTTAGAAGAGAAAGAGCCCGTGACAATCATCTATCGGATGTACGA
CGCAGACGTATACGCAGCTCGGGGAGACGAAGGGGCATGGACTCCCAAGC
AACAGTTTTGGGGCTTTACCGACCCAGCGGTGGTGGAGCATCGAACACAT
GACGGCCGATGGACAGAGGTCCCGGCTTGCACTGACTTCGGCTCAGCTTT
GTTTCAGGCCACTTTTACGGATTTGTACCCCGTATTAAAGCATTTTCCTG
CCACAGCCGCCTCGTGTCCAATGGCGCAACTATCGGACGATGTGTTTCCA
TCCATGATTCTATTCGGCGCTGGCCTGGAGCAGGGCTATGCGGCCAGCAT
TACTAGCTATACGAACTACGATACGAGATATCTGTATTGGTGCGCACAAG
AAGCCAAGATGGGGCCGAATATGGTGATCCGCATGCAAGGGAAGCTCCCG
CGTGTTCCCCAGGGCCTATATAGCGGTGAAAGATTACCGCGCGTGGCTCA
ATCCGAACTTTATGATGCTCGCTATATCTCTATTAGCACCATTGACATGC
TTTTCCCGTCCCCGACCTACCAAGAAGTTGAAGACCACGATATCGAGCGT
TTCTATTCAGAAGTACCGGGCTGGGCAGAACATGATCGAACGTACTCTAT
TATATTTTCCATAGATCAAAAGGTGGCATTGGCTTGTAATTTATATGATG
CCGACACACAATTGTTCCTGGCTTGGGACGACGCTTACGACTATGGCCTA
GGACCCACACGCATGCCCTCGATTGTGTATCGCGAGCTTTTGCCAACGCC
GGCGGCAGGTGGGAGGTCTTTGAAAGATGTTGACAAAGCATGTCACGCCG
TTGAAAAGACGGCGTGTGGGGACGGGAGTTTCATACGGGGCGTCATGGGT
GATATTTATCCACGAATCGATGTATTTGAATGTGACCCGACAACGGGGAT
CGCGACTTTACTTGCTTGA
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Synonyms
Publications