jgi.p|Nanoce1779_2|533845, mRNA_10188 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|533845
Unique Name	mRNA_10188
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	783
Alignment location	scaffold_48:104072..105770 -

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Properties


Property Name	Value
TranscriptId	533931
Track	FilteredModels2
ProteinId	533845

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_48	supercontig	scaffold_48:104072..105770 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533845	gene_10188	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533845	mRNA_10188-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10188	CDS_10188	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_48:104072..105770-
coding sequence from alignment at scaffold_48:104072..105770-

mRNA sequence

>mRNA_10188 ID=mRNA_10188|Name=jgi.p|Nanoce1779_2|533845|organism=Nannochloropsis oceanica|type=mRNA|length=783bp
ATGTGTGGCCTCTCCCTGGCCTGCAAGCTCATCCCTCCCCCCTCCCGCCT
TCCCTCCCACCACATCAAACCCCAACAGTGGACCTCCCGGGTCGCTTATG
GCCTAGCGCAAACCCTCCGGTTCAGTTTCGACCTGTTGGCGGGCTTCAAA
CACCGCAAGGCCACTGAGGATATGTTCCTGAACCGTGTCGTATTCCTCGA
GACCGTGGCGGGCATTCCCGGCATGGCAGCCGGCATGATTCGTCACCTAC
ACAGCCTCCGCCGGATGAAGCGGGACCACGGGTGGATCCACACCTTGTTG
GAGGAGGCAGAGAACGAGCGTATGCACTTGTTGACCTTCATGAGGTTGAA
GCAGCCGGGTCCCTTTTTTCGCTTCTCGGTGTTGGTGGTACAAGGAGTGT
TCTTCAACGTCTTTTTCCTCTCGTACCTGATCAATCCCAAGATTTGCCAT
CGCCTCGTTGGTCACATCGAGGAGGAGGCCGTTAAGACGTACACGCACAT
CATCGACATGATGGATGCCGGAGAGCTGCCCTTGTTCAACCACATCATCC
CTCCGCCCATCGCCGTGTCGTACTGGAAGCTAGCTCCTGATGCCACCTTC
CGCGACCTGCTTCTGGCGATCCGCAAGGATGAGGCCACGCACCGTGAAGT
TAACCACACCTTTGCAAGCATGGACGAGAACGATGACAACCCCTTCCTTG
CAGAGGAGCAGTACCGCGCGCAAGTGGAGATGCATAACTCCACGGCCATG
ACGTCGGAGAAGGAGAAAAATAAGATGGCGTAA

protein sequence of jgi.p|Nanoce1779_2|533845

>mRNA_10188-protein ID=mRNA_10188-protein|Name=jgi.p|Nanoce1779_2|533845|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MCGLSLACKLIPPPSRLPSHHIKPQQWTSRVAYGLAQTLRFSFDLLAGFK
HRKATEDMFLNRVVFLETVAGIPGMAAGMIRHLHSLRRMKRDHGWIHTLL
EEAENERMHLLTFMRLKQPGPFFRFSVLVVQGVFFNVFFLSYLINPKICH
RLVGHIEEEAVKTYTHIIDMMDAGELPLFNHIIPPPIAVSYWKLAPDATF
RDLLLAIRKDEATHREVNHTFASMDENDDNPFLAEEQYRAQVEMHNSTAM
TSEKEKNKMA*

mRNA from alignment at scaffold_48:104072..105770-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10188 ID=mRNA_10188|Name=jgi.p|Nanoce1779_2|533845|organism=Nannochloropsis oceanica|type=mRNA|length=1699bp|location=Sequence derived from alignment at scaffold_48:104072..105770- (Nannochloropsis oceanica)
ATGTGTGGCCTCTCCCTGGCCTGCAAGCTCATCCCTCCCCCCTCCCGCCT
TCCCTCCCACCACATCAAACCCCAACAGTGGACCTCCCGGGTCGCTTATG
GCCTAGCGCAAACCCTCCGGTTCAGTTTCGACCTGTTGGCGGGCTTCAAA
CACCGCAAGGCCACTGAGGATATGTTCCTGAACCGTGTCGTATTCCTCGA
GACCGTGGCGGGTACGTAGAGGATGGGGGATGGAGCGTGTATCGAGAAAT
GGAGGGAGGGAAAAAAGAATATTGGACGTCAGACGTGTCGTGTAAGCGTT
TCCGTACTACCGTCGGAGGGTAAATATCGTGTATAAACTAGCCTCTCCTC
CCTCTTATCCTGTCACCGTATCCACTCGCTCTCCCTCCTCCTCTTCCTCC
TCCTTCTCCTCCTCCCTCCGACCTCCTCCTCCTCCACCACCACCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCTTTTTTTG
TTTTCCTTGCAGGCATTCCCGGCATGGCAGCCGGCATGATTCGTCACCTA
CACAGCCTCCGCCGGATGAAGCGGGACCACGGGTGGATCCACACCTTGTT
GGAGGAGGCAGAGAACGAGCGTATGCACTTGTTGACCTTCATGAGGTTGA
AGCAGCCGGGTCCCTTTTTTCGCTTCTCGGTGTTGGTGGTACAAGGAGTG
TTCTTCAACGGTGCGTTTCGGCAGGGGGGGAGAGGGGGGACTTTAAACTC
AGCATCATTCCTCTTGCTTAACCATCCCTTTCATTCACATTTGTACCCAC
CACCACCCACATAGTCTTTTTCCTCTCGTACCTGATCAATCCCAAGATTT
GCCATCGCCTCGTTGGTCACATCGAGGAGGAGGCCGTTAAGACGGTAAGT
CGCTCGAGCTTCAAGGGAGGGACGGGGGGTTGTAGGGCGGAACGGCGTGG
TACAAGAAACACCAGCTGCTGTATTATTGTCTATTGCAGGCAGAGGCGAG
TATGCACCTTGTTCCGTACGCTGTAGGACATTGGAGGAGCGGATCGGATC
GCAGTGACGGTAGCATGAGGTAGCGTGGTGCTCACTCGCATTTTGGAGTT
CATGTCTTTTATTCTAATCCCCATCCCAACCTATGTACTCCCCCACATAG
TACACGCACATCATCGACATGATGGATGCCGGAGAGCTGCCCTTGTTCAA
CCACATCATCCCTCCGCCCATCGCCGTGTCGTACTGGAAGCTAGGTATGT
TGACGGGCAATGGGAGCAGTGCACCCACATAGAAGGAAGTTCGCGAACGA
CTGCACATACACACACATACATACGCATACATACACACGTGCACACACGT
ACGAACTAGGGGGTGCGCATCACGTGCATTAATATATTAGCACGCATACA
CACGCTTGTGCACATAAAGATAATGTAATAATATATCACGCTCATTCCCT
CGTATCGTTACGCTCATTTTCCTGTCAATACAAACACGCAAACACACAGC
TCCTGATGCCACCTTCCGCGACCTGCTTCTGGCGATCCGCAAGGATGAGG
CCACGCACCGTGAAGTTAACCACACCTTTGCAAGCATGGACGAGAACGAT
GACAACCCCTTCCTTGCAGAGGAGCAGTACCGCGCGCAAGTGGAGATGCA
TAACTCCACGGCCATGACGTCGGAGAAGGAGAAAAATAAGATGGCGTAA

Coding sequence (CDS) from alignment at scaffold_48:104072..105770-

>mRNA_10188 ID=mRNA_10188|Name=jgi.p|Nanoce1779_2|533845|organism=Nannochloropsis oceanica|type=CDS|length=3915bp|location=Sequence derived from alignment at scaffold_48:104072..105770- (Nannochloropsis oceanica)
CTCCTGATGCCACCTTCCGCGACCTGCTTCTGGCGATCCGCAAGGATGAG
GCCACGCACCGTGAAGTTAACCACACCTTTGCAAGCATGGACGAGAACGA
TGACAACCCCTTCCTTGCAGAGGAGCAGTACCGCGCGCAAGTGGAGATGC
ATAACTCCACGGCCATGACGTCGGAGAAGGAGAAAAATAAGATGGCGTAA
TACACGCACATCATCGACATGATGGATGCCGGAGAGCTGCCCTTGTTCAA
CCACATCATCCCTCCGCCCATCGCCGTGTCGTACTGGAAGCTAGTCTTTT
TCCTCTCGTACCTGATCAATCCCAAGATTTGCCATCGCCTCGTTGGTCAC
ATCGAGGAGGAGGCCGTTAAGACGGCATTCCCGGCATGGCAGCCGGCATG
ATTCGTCACCTACACAGCCTCCGCCGGATGAAGCGGGACCACGGGTGGAT
CCACACCTTGTTGGAGGAGGCAGAGAACGAGCGTATGCACTTGTTGACCT
TCATGAGGTTGAAGCAGCCGGGTCCCTTTTTTCGCTTCTCGGTGTTGGTG
GTACAAGGAGTGTTCTTCAACGATGTGTGGCCTCTCCCTGGCCTGCAAGC
TCATCCCTCCCCCCTCCCGCCTTCCCTCCCACCACATCAAACCCCAACAG
TGGACCTCCCGGGTCGCTTATGGCCTAGCGCAAACCCTCCGGTTCAGTTT
CGACCTGTTGGCGGGCTTCAAACACCGCAAGGCCACTGAGGATATGTTCC
TGAACCGTGTCGTATTCCTCGAGACCGTGGCGGCTCCTGATGCCACCTTC
CGCGACCTGCTTCTGGCGATCCGCAAGGATGAGGCCACGCACCGTGAAGT
TAACCACACCTTTGCAAGCATGGACGAGAACGATGACAACCCCTTCCTTG
CAGAGGAGCAGTACCGCGCGCAAGTGGAGATGCATAACTCCACGGCCATG
ACGTCGGAGAAGGAGAAAAATAAGATGGCGTAATACACGCACATCATCGA
CATGATGGATGCCGGAGAGCTGCCCTTGTTCAACCACATCATCCCTCCGC
CCATCGCCGTGTCGTACTGGAAGCTAGTCTTTTTCCTCTCGTACCTGATC
AATCCCAAGATTTGCCATCGCCTCGTTGGTCACATCGAGGAGGAGGCCGT
TAAGACGGCATTCCCGGCATGGCAGCCGGCATGATTCGTCACCTACACAG
CCTCCGCCGGATGAAGCGGGACCACGGGTGGATCCACACCTTGTTGGAGG
AGGCAGAGAACGAGCGTATGCACTTGTTGACCTTCATGAGGTTGAAGCAG
CCGGGTCCCTTTTTTCGCTTCTCGGTGTTGGTGGTACAAGGAGTGTTCTT
CAACGATGTGTGGCCTCTCCCTGGCCTGCAAGCTCATCCCTCCCCCCTCC
CGCCTTCCCTCCCACCACATCAAACCCCAACAGTGGACCTCCCGGGTCGC
TTATGGCCTAGCGCAAACCCTCCGGTTCAGTTTCGACCTGTTGGCGGGCT
TCAAACACCGCAAGGCCACTGAGGATATGTTCCTGAACCGTGTCGTATTC
CTCGAGACCGTGGCGGCTCCTGATGCCACCTTCCGCGACCTGCTTCTGGC
GATCCGCAAGGATGAGGCCACGCACCGTGAAGTTAACCACACCTTTGCAA
GCATGGACGAGAACGATGACAACCCCTTCCTTGCAGAGGAGCAGTACCGC
GCGCAAGTGGAGATGCATAACTCCACGGCCATGACGTCGGAGAAGGAGAA
AAATAAGATGGCGTAATACACGCACATCATCGACATGATGGATGCCGGAG
AGCTGCCCTTGTTCAACCACATCATCCCTCCGCCCATCGCCGTGTCGTAC
TGGAAGCTAGTCTTTTTCCTCTCGTACCTGATCAATCCCAAGATTTGCCA
TCGCCTCGTTGGTCACATCGAGGAGGAGGCCGTTAAGACGGCATTCCCGG
CATGGCAGCCGGCATGATTCGTCACCTACACAGCCTCCGCCGGATGAAGC
GGGACCACGGGTGGATCCACACCTTGTTGGAGGAGGCAGAGAACGAGCGT
ATGCACTTGTTGACCTTCATGAGGTTGAAGCAGCCGGGTCCCTTTTTTCG
CTTCTCGGTGTTGGTGGTACAAGGAGTGTTCTTCAACGATGTGTGGCCTC
TCCCTGGCCTGCAAGCTCATCCCTCCCCCCTCCCGCCTTCCCTCCCACCA
CATCAAACCCCAACAGTGGACCTCCCGGGTCGCTTATGGCCTAGCGCAAA
CCCTCCGGTTCAGTTTCGACCTGTTGGCGGGCTTCAAACACCGCAAGGCC
ACTGAGGATATGTTCCTGAACCGTGTCGTATTCCTCGAGACCGTGGCGGC
TCCTGATGCCACCTTCCGCGACCTGCTTCTGGCGATCCGCAAGGATGAGG
CCACGCACCGTGAAGTTAACCACACCTTTGCAAGCATGGACGAGAACGAT
GACAACCCCTTCCTTGCAGAGGAGCAGTACCGCGCGCAAGTGGAGATGCA
TAACTCCACGGCCATGACGTCGGAGAAGGAGAAAAATAAGATGGCGTAAT
ACACGCACATCATCGACATGATGGATGCCGGAGAGCTGCCCTTGTTCAAC
CACATCATCCCTCCGCCCATCGCCGTGTCGTACTGGAAGCTAGTCTTTTT
CCTCTCGTACCTGATCAATCCCAAGATTTGCCATCGCCTCGTTGGTCACA
TCGAGGAGGAGGCCGTTAAGACGGCATTCCCGGCATGGCAGCCGGCATGA
TTCGTCACCTACACAGCCTCCGCCGGATGAAGCGGGACCACGGGTGGATC
CACACCTTGTTGGAGGAGGCAGAGAACGAGCGTATGCACTTGTTGACCTT
CATGAGGTTGAAGCAGCCGGGTCCCTTTTTTCGCTTCTCGGTGTTGGTGG
TACAAGGAGTGTTCTTCAACGATGTGTGGCCTCTCCCTGGCCTGCAAGCT
CATCCCTCCCCCCTCCCGCCTTCCCTCCCACCACATCAAACCCCAACAGT
GGACCTCCCGGGTCGCTTATGGCCTAGCGCAAACCCTCCGGTTCAGTTTC
GACCTGTTGGCGGGCTTCAAACACCGCAAGGCCACTGAGGATATGTTCCT
GAACCGTGTCGTATTCCTCGAGACCGTGGCGGCTCCTGATGCCACCTTCC
GCGACCTGCTTCTGGCGATCCGCAAGGATGAGGCCACGCACCGTGAAGTT
AACCACACCTTTGCAAGCATGGACGAGAACGATGACAACCCCTTCCTTGC
AGAGGAGCAGTACCGCGCGCAAGTGGAGATGCATAACTCCACGGCCATGA
CGTCGGAGAAGGAGAAAAATAAGATGGCGTAATACACGCACATCATCGAC
ATGATGGATGCCGGAGAGCTGCCCTTGTTCAACCACATCATCCCTCCGCC
CATCGCCGTGTCGTACTGGAAGCTAGTCTTTTTCCTCTCGTACCTGATCA
ATCCCAAGATTTGCCATCGCCTCGTTGGTCACATCGAGGAGGAGGCCGTT
AAGACGGCATTCCCGGCATGGCAGCCGGCATGATTCGTCACCTACACAGC
CTCCGCCGGATGAAGCGGGACCACGGGTGGATCCACACCTTGTTGGAGGA
GGCAGAGAACGAGCGTATGCACTTGTTGACCTTCATGAGGTTGAAGCAGC
CGGGTCCCTTTTTTCGCTTCTCGGTGTTGGTGGTACAAGGAGTGTTCTTC
AACGATGTGTGGCCTCTCCCTGGCCTGCAAGCTCATCCCTCCCCCCTCCC
GCCTTCCCTCCCACCACATCAAACCCCAACAGTGGACCTCCCGGGTCGCT
TATGGCCTAGCGCAAACCCTCCGGTTCAGTTTCGACCTGTTGGCGGGCTT
CAAACACCGCAAGGCCACTGAGGATATGTTCCTGAACCGTGTCGTATTCC
TCGAGACCGTGGCGG

Synonyms

Publications