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Properties
Property Name | Value |
TranscriptId | 580923 |
Track | FilteredModels2 |
ProteinId | 580837 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_5 | supercontig | scaffold_5:712387..714938 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2587 ID=mRNA_2587|Name=jgi.p|Nanoce1779_2|580837|organism=Nannochloropsis oceanica|type=mRNA|length=2125bp AGCAGCAGCAGCAGCAGCAGCAGTGGCGGGATGGCAGACGAATTGCAGGG GACTGCCAAAAAGGCGATTGCCGACGTTCGAGCTCTAGTAGACAACACCG AGGCCCACATAGAGACAGAGGAAACGGCGGAGGAAGAGGCCTGTGCAGCA GCAGCGACGGAAGCCTCTGCAGCAGCAGCAGTGACGGAAGCTGCTGCACG AGCGGCTGCTCCTGCTTCTCCAACACCAACAACGCTGACATCCTTTCTTA AGCCCAGGACGCGAAACGCCGCGGCAACCAAATGGATGATTTCTGATGAC GAGGATTCCATCCCGTGCGGTCGTTCGCTGTCGTCTGCATTGAGTGTGAT AGGTGGTGGATTACCTCTACGAAGGGGAGGGAGCACGATGGGATCTGCCA TCGCCGCCTCCTCCTCCTTTCCCTCTGTCGCCCGTTCTATGTCCAGCACA TATTTTAGCTCTGCCAGCACAATGACCAAGGTGTATCATACTGAGGAGAC GGTGGTGCAGGAAGCGAGGGAGGGAGGGCCGACGTGGGCGAGCACCGTTA CCGAGGAGGAGGAGATTTCCATTTCGACGACCGCTACATCATCCTCCCCT CTCTCCCCCTCTTCTACTTTCCTTGCTCAAGATGCAGCAGTGGCTATAGA GGCAACTGTATGTGCAGTTGCAGAAAAGGCGCACACTGCTGCTGCTGCTG CTGTTGTTGGCACCACTCTCGACGAAGACGTCAAACGTGAGACAGAGCTG GCAGAGCGATTCCACGCCGAGACGGCGAGGCAGGTGGAGGGCCTGACGTC GGACCAGAGGAGAGCATTGGAAAGAGTCAGAGAGGCATTGTACGGCCCAG CTGTGTGTGAGAAGAGGATAAGAGCAGTGGACGAGCTGGCGGTGTGCGGG GACCGAGATGCGATGATGTTGTCGTTTTTGCAACGAAAGAATTATGATGC GGAGGTGGCTCTCAAGAGTTTTGAGAGAGTTATCAGCTGGAGAATGGAAA ATGAGATTGAGGATGTTTTTGAGGGAGGGCGGCTGGCGCGGGAGAAGGTG GAGAAGCATCGGGAGTGTTGGCCAACGGCATTCTATTTCACAAAGGACAA GGAGGGGGACCCAGTGTTTGTGGACCGAATGGGGATTTTGGAACTGGCAA AGCTGAGGAAGGGAGAGGTGCAGTTGGATATACAGGACATGGTGTTGTAT TATGTCCAGACGATGGAGGGGAGGAGGAGGCTCCTTTTTCCCCATCTCAG CCGGCAGAGCGGGCGTCACATCACCTCCTACGTCAGTGTCGTGGATGTCT CTCACTTTGGTCCACAGCATTTCGGTCGGCACGCCCTCTCCTTCCTCGCG GCCATTGGCGCCGTGCATGACGACACCTATTCCGATCTGGTCAAGTCAAT GTATATTATCAACGCGCCGTTCTTCTTCCATAAAGTATTCCATCTCATTT CATGCATGATGAACCAAGAGCTCAAAGACCGGCTGAAGGTGCTCAACCGA AAACAGAGTTTGGTAGAATTATCAAAAATCATGCCGAGCGATGTAGCGCA GGCCATCGTGGAGGGGAATCATGAAAAGGAGAGGGAGGAGGAGAGGAAGT TGCATGCGTTTTTGGATTATGCGGCGAGTAAGGGTCTGCATAAGAGAAGG TGGGGCTTGGAAGATGCATAGAGAGGCAGATAAGATGAGAAAACGGGAAA TTACAACAACACAGTAAATGAGGCTGTGTTGAGTGAGAAGAGTGAGAAAG CAGGTGAAGGAAAGAGGCGATGTCGACGAGGGTTTGGAAACAAAATGAGC TGACGGAGGCAATGCATGGATAGATGTCTTGCCTGCCAGACAGACAGGCC GACGGATCGACAGACAAACTCTTGCACACGCGAGGATTGTGCGCCTCAAG ACCCCCAAGATAGACTGCGACCGATAACTGCAGTAAAATACACTTTGAGG GTAATAACAAGGCCGGGGTGAATTATGATTTTATGCATTAGTAGTATTAT AACACTATTTCAAAAAGTAGTAACTGTATTGTTCATGGTTATGATGGCAA GAGCAAAGGAAGAGAGAAGAGGGAAAGCGAGGAACGACTGGAAGAAGACG CAGTAAAAATGACAACGGATTGCAG back to topprotein sequence of jgi.p|Nanoce1779_2|580837 >mRNA_2587-protein ID=mRNA_2587-protein|Name=jgi.p|Nanoce1779_2|580837|organism=Nannochloropsis oceanica|type=polypeptide|length=547bp MADELQGTAKKAIADVRALVDNTEAHIETEETAEEEACAAAATEASAAAA VTEAAARAAAPASPTPTTLTSFLKPRTRNAAATKWMISDDEDSIPCGRSL SSALSVIGGGLPLRRGGSTMGSAIAASSSFPSVARSMSSTYFSSASTMTK VYHTEETVVQEAREGGPTWASTVTEEEEISISTTATSSSPLSPSSTFLAQ DAAVAIEATVCAVAEKAHTAAAAAVVGTTLDEDVKRETELAERFHAETAR QVEGLTSDQRRALERVREALYGPAVCEKRIRAVDELAVCGDRDAMMLSFL QRKNYDAEVALKSFERVISWRMENEIEDVFEGGRLAREKVEKHRECWPTA FYFTKDKEGDPVFVDRMGILELAKLRKGEVQLDIQDMVLYYVQTMEGRRR LLFPHLSRQSGRHITSYVSVVDVSHFGPQHFGRHALSFLAAIGAVHDDTY SDLVKSMYIINAPFFFHKVFHLISCMMNQELKDRLKVLNRKQSLVELSKI MPSDVAQAIVEGNHEKEREEERKLHAFLDYAASKGLHKRRWGLEDA* back to topmRNA from alignment at scaffold_5:712387..714938+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2587 ID=mRNA_2587|Name=jgi.p|Nanoce1779_2|580837|organism=Nannochloropsis oceanica|type=mRNA|length=2552bp|location=Sequence derived from alignment at scaffold_5:712387..714938+ (Nannochloropsis oceanica) AGCAGCAGCAGCAGCAGCAGCAGTGGCGGGATGGCAGACGAATTGCAGGG
GACTGCCAAAAAGGCGATTGCCGACGTTCGAGCTCTAGTAGACAACACCG
AGGCCCACATAGAGACAGAGGAAACGGCGGAGGAAGAGGCCTGTGCAGCA
GCAGCGACGGAAGCCTCTGCAGCAGCAGCAGTGACGGAAGCTGCTGCACG
AGCGGCTGCTCCTGCTTCTCCAACACCAACAACGCTGACATCCTTTCTTA
AGCCCAGGACGCGAAACGCCGCGGCAACCAAATGGATGATTTCTGATGAC
GAGGATTCCATCCCGTGCGGTCGTTCGCTGTCGTCTGCATTGAGTGTGAT
AGGTGGTGGATTACCTCTACGAAGGGGAGGGAGCACGATGGGATCTGCCA
TCGCCGCCTCCTCCTCCTTTCCCTCTGTCGCCCGTTCTATGTCCAGCACA
TATTTTAGCTCTGCCAGCACAATGACCAAGGTGTATCATACTGAGGAGAC
GGTGGTGCAGGAAGCGAGGGAGGGAGGGCCGACGTGGGCGAGCACCGTTA
CCGAGGAGGAGGAGATTTCCATTTCGACGACCGCTACATCATCCTCCCCT
CTCTCCCCCTCTTCTACTTTCCTTGCTCAAGATGCAGCAGTGGCTATAGA
GGCAACTGTATGTGCAGTTGCAGAAAAGGCGCACACTGCTGCTGCTGCTG
CTGTTGTTGGCACCACTCTCGACGAAGACGTCAAACGTGAGACAGAGCTG
GCAGAGCGATTCCACGCCGAGACGGCGAGGCAGGTGGAGGGCCTGACGTC
GGACCAGAGGAGAGCATTGGAAAGAGTCAGAGAGGCATTGTACGGCCCAG
CTGTGTGTGAGAAGAGGATAAGAGCAGTGGACGAGCTGGCGGTGTGCGGG
GACCGAGATGCGATGATGTTGTCGTTTTTGCAACGAAAGAATTATGATGC
GGAGGTGGCTCTCAAGAGTTTTGAGAGAGTTATCAGCTGGAGAATGGAAA
ATGAGATTGAGGATGTTTTTGAGGGAGGGCGGCTGGCGCGGGAGAAGGTG
GAGAAGCATCGGGAGTGTTGGCCAACGGCATTCTATTTCACAAAGGACAA
GGAGGGGGACCCAGTGTTTGTGGACCGAATGGGGATTTTGGAACTGGCAA
AGCTGAGGAAGGGAGAGGTGCAGTTGGATATACAGGACATGGTGTTGTAT
TATGTCCAGACGATGGAGGGGAGGAGGAGGTGAGGGAGAGAGGGAGGGAG
GGAGGCAGAAGGGGGGAGAGGAGATTGTCATCTGGTCTGATTCTGTCGAC
GCTGCCGAACCTCAACAGTCCTCCCCCCCACGATGTACCACATACTCGCC
CCCCACCCCCCCCATACGCATTTGTCTCGTCTCATGACAATCGACGGAGC
GGGCGTATCCTTACCCTGCACGTCACTTTCGCGGGCGTTTCCAACTGTGG
TCTCACACCCTCCTTCCCTCTCTTCATCCCTCCCTGTCTGCTGTCTCTAC
AGGCTCCTTTTTCCCCATCTCAGCCGGCAGAGCGGGCGTCACATCACCTC
CTACGTCAGTGTCGTGGATGTCTCTCACTTTGGTCCACAGCATTTCGGTC
GGCACGCCCTCTCCTTCCTCGCGGCCATTGGCGCCGTGCATGACGACACC
TATTCCGATCTGGTCAAGTCAATGTATGTGTGTGTTTTGTCTGTTCCTGT
GACTACTTAATCTTTCCTTTTTTCTTCTCTGTTGCTTCTTTTATGCATGG
GGGTTTTGGTGGCCAATTGCAAGCAAATATTTCCTCCATTCTTTCTTTCC
TCCTTCCCTCCCCCCCCCCCACCACAGGTATATTATCAACGCGCCGTTCT
TCTTCCATAAAGTATTCCATCTCATTTCATGCATGATGAACCAAGAGCTC
AAAGACCGGCTGAAGGTGCTCAACCGAAAACAGAGTTTGGTAGAATTATC
AAAAATCATGCCGAGCGATGTAGCGCAGGCCATCGTGGAGGGGAATCATG
AAAAGGAGAGGGAGGAGGAGAGGAAGTTGCATGCGTTTTTGGATTATGCG
GCGAGTAAGGGTCTGCATAAGAGAAGGTGGGGCTTGGAAGATGCATAGAG
AGGCAGATAAGATGAGAAAACGGGAAATTACAACAACACAGTAAATGAGG
CTGTGTTGAGTGAGAAGAGTGAGAAAGCAGGTGAAGGAAAGAGGCGATGT
CGACGAGGGTTTGGAAACAAAATGAGCTGACGGAGGCAATGCATGGATAG
ATGTCTTGCCTGCCAGACAGACAGGCCGACGGATCGACAGACAAACTCTT
GCACACGCGAGGATTGTGCGCCTCAAGACCCCCAAGATAGACTGCGACCG
ATAACTGCAGTAAAATACACTTTGAGGGTAATAACAAGGCCGGGGTGAAT
TATGATTTTATGCATTAGTAGTATTATAACACTATTTCAAAAAGTAGTAA
CTGTATTGTTCATGGTTATGATGGCAAGAGCAAAGGAAGAGAGAAGAGGG
AAAGCGAGGAACGACTGGAAGAAGACGCAGTAAAAATGACAACGGATTGC
AG back to topCoding sequence (CDS) from alignment at scaffold_5:712387..714938+ >mRNA_2587 ID=mRNA_2587|Name=jgi.p|Nanoce1779_2|580837|organism=Nannochloropsis oceanica|type=CDS|length=4923bp|location=Sequence derived from alignment at scaffold_5:712387..714938+ (Nannochloropsis oceanica) ATGGCAGACGAATTGCAGGGGACTGCCAAAAAGGCGATTGCCGACGTTCG AGCTCTAGTAGACAACACCGAGGCCCACATAGAGACAGAGGAAACGGCGG AGGAAGAGGCCTGTGCAGCAGCAGCGACGGAAGCCTCTGCAGCAGCAGCA GTGACGGAAGCTGCTGCACGAGCGGCTGCTCCTGCTTCTCCAACACCAAC AACGCTGACATCCTTTCTTAAGCCCAGGACGCGAAACGCCGCGGCAACCA AATGGATGATTTCTGATGACGAGGATTCCATCCCGTGCGGTCGTTCGCTG TCGTCTGCATTGAGTGTGATAGGTGGTGGATTACCTCTACGAAGGGGAGG GAGCACGATGGGATCTGCCATCGCCGCCTCCTCCTCCTTTCCCTCTGTCG CCCGTTCTATGTCCAGCACATATTTTAGCTCTGCCAGCACAATGACCAAG GTGTATCATACTGAGGAGACGGTGGTGCAGGAAGCGAGGGAGGGAGGGCC GACGTGGGCGAGCACCGTTACCGAGGAGGAGGAGATTTCCATTTCGACGA CCGCTACATCATCCTCCCCTCTCTCCCCCTCTTCTACTTTCCTTGCTCAA GATGCAGCAGTGGCTATAGAGGCAACTGTATGTGCAGTTGCAGAAAAGGC GCACACTGCTGCTGCTGCTGCTGTTGTTGGCACCACTCTCGACGAAGACG TCAAACGTGAGACAGAGCTGGCAGAGCGATTCCACGCCGAGACGGCGAGG CAGGTGGAGGGCCTGACGTCGGACCAGAGGAGAGCATTGGAAAGAGTCAG AGAGGCATTGTACGGCCCAGCTGTGTGTGAGAAGAGGATAAGAGCAGTGG ACGAGCTGGCGGTGTGCGGGGACCGAGATGCGATGATGTTGTCGTTTTTG CAACGAAAGAATTATGATGCGGAGGTGGCTCTCAAGAGTTTTGAGAGAGT TATCAGCTGGAGAATGGAAAATGAGATTGAGGATGTTTTTGAGGGAGGGC GGCTGGCGCGGGAGAAGGTGGAGAAGCATCGGGAGTGTTGGCCAACGGCA TTCTATTTCACAAAGGACAAGGAGGGGGACCCAGTGTTTGTGGACCGAAT GGGGATTTTGGAACTGGCAAAGCTGAGGAAGGGAGAGGTGCAGTTGGATA TACAGGACATGGTGTTGTATTATGTCCAGACGATGGAGGGGAGGAGGAGG CTCCTTTTTCCCCATCTCAGCCGGCAGAGCGGGCGTCACATCACCTCCTA CGTCAGTGTCGTGGATGTCTCTCACTTTGGTCCACAGCATTTCGGTCGGC ACGCCCTCTCCTTCCTCGCGGCCATTGGCGCCGTGCATGACGACACCTAT TCCGATCTGGTCAAGTCAATGTATATTATCAACGCGCCGTTCTTCTTCCA TAAAGTATTCCATCTCATTTCATGCATGATGAACCAAGAGCTCAAAGACC GGCTGAAGGTGCTCAACCGAAAACAGAGTTTGGTAGAATTATCAAAAATC ATGCCGAGCGATGTAGCGCAGGCCATCGTGGAGGGGAATCATGAAAAGGA GAGGGAGGAGGAGAGGAAGTTGCATGCGTTTTTGGATTATGCGGCGAGTA AGGGTCTGCATAAGAGAAGGTGGGGCTTGGAAGATGCATAGATGGCAGAC GAATTGCAGGGGACTGCCAAAAAGGCGATTGCCGACGTTCGAGCTCTAGT AGACAACACCGAGGCCCACATAGAGACAGAGGAAACGGCGGAGGAAGAGG CCTGTGCAGCAGCAGCGACGGAAGCCTCTGCAGCAGCAGCAGTGACGGAA GCTGCTGCACGAGCGGCTGCTCCTGCTTCTCCAACACCAACAACGCTGAC ATCCTTTCTTAAGCCCAGGACGCGAAACGCCGCGGCAACCAAATGGATGA TTTCTGATGACGAGGATTCCATCCCGTGCGGTCGTTCGCTGTCGTCTGCA TTGAGTGTGATAGGTGGTGGATTACCTCTACGAAGGGGAGGGAGCACGAT GGGATCTGCCATCGCCGCCTCCTCCTCCTTTCCCTCTGTCGCCCGTTCTA TGTCCAGCACATATTTTAGCTCTGCCAGCACAATGACCAAGGTGTATCAT ACTGAGGAGACGGTGGTGCAGGAAGCGAGGGAGGGAGGGCCGACGTGGGC GAGCACCGTTACCGAGGAGGAGGAGATTTCCATTTCGACGACCGCTACAT CATCCTCCCCTCTCTCCCCCTCTTCTACTTTCCTTGCTCAAGATGCAGCA GTGGCTATAGAGGCAACTGTATGTGCAGTTGCAGAAAAGGCGCACACTGC TGCTGCTGCTGCTGTTGTTGGCACCACTCTCGACGAAGACGTCAAACGTG AGACAGAGCTGGCAGAGCGATTCCACGCCGAGACGGCGAGGCAGGTGGAG GGCCTGACGTCGGACCAGAGGAGAGCATTGGAAAGAGTCAGAGAGGCATT GTACGGCCCAGCTGTGTGTGAGAAGAGGATAAGAGCAGTGGACGAGCTGG CGGTGTGCGGGGACCGAGATGCGATGATGTTGTCGTTTTTGCAACGAAAG AATTATGATGCGGAGGTGGCTCTCAAGAGTTTTGAGAGAGTTATCAGCTG GAGAATGGAAAATGAGATTGAGGATGTTTTTGAGGGAGGGCGGCTGGCGC GGGAGAAGGTGGAGAAGCATCGGGAGTGTTGGCCAACGGCATTCTATTTC ACAAAGGACAAGGAGGGGGACCCAGTGTTTGTGGACCGAATGGGGATTTT GGAACTGGCAAAGCTGAGGAAGGGAGAGGTGCAGTTGGATATACAGGACA TGGTGTTGTATTATGTCCAGACGATGGAGGGGAGGAGGAGGCTCCTTTTT CCCCATCTCAGCCGGCAGAGCGGGCGTCACATCACCTCCTACGTCAGTGT CGTGGATGTCTCTCACTTTGGTCCACAGCATTTCGGTCGGCACGCCCTCT CCTTCCTCGCGGCCATTGGCGCCGTGCATGACGACACCTATTCCGATCTG GTCAAGTCAATGTATATTATCAACGCGCCGTTCTTCTTCCATAAAGTATT CCATCTCATTTCATGCATGATGAACCAAGAGCTCAAAGACCGGCTGAAGG TGCTCAACCGAAAACAGAGTTTGGTAGAATTATCAAAAATCATGCCGAGC GATGTAGCGCAGGCCATCGTGGAGGGGAATCATGAAAAGGAGAGGGAGGA GGAGAGGAAGTTGCATGCGTTTTTGGATTATGCGGCGAGTAAGGGTCTGC ATAAGAGAAGGTGGGGCTTGGAAGATGCATAGATGGCAGACGAATTGCAG GGGACTGCCAAAAAGGCGATTGCCGACGTTCGAGCTCTAGTAGACAACAC CGAGGCCCACATAGAGACAGAGGAAACGGCGGAGGAAGAGGCCTGTGCAG CAGCAGCGACGGAAGCCTCTGCAGCAGCAGCAGTGACGGAAGCTGCTGCA CGAGCGGCTGCTCCTGCTTCTCCAACACCAACAACGCTGACATCCTTTCT TAAGCCCAGGACGCGAAACGCCGCGGCAACCAAATGGATGATTTCTGATG ACGAGGATTCCATCCCGTGCGGTCGTTCGCTGTCGTCTGCATTGAGTGTG ATAGGTGGTGGATTACCTCTACGAAGGGGAGGGAGCACGATGGGATCTGC CATCGCCGCCTCCTCCTCCTTTCCCTCTGTCGCCCGTTCTATGTCCAGCA CATATTTTAGCTCTGCCAGCACAATGACCAAGGTGTATCATACTGAGGAG ACGGTGGTGCAGGAAGCGAGGGAGGGAGGGCCGACGTGGGCGAGCACCGT TACCGAGGAGGAGGAGATTTCCATTTCGACGACCGCTACATCATCCTCCC CTCTCTCCCCCTCTTCTACTTTCCTTGCTCAAGATGCAGCAGTGGCTATA GAGGCAACTGTATGTGCAGTTGCAGAAAAGGCGCACACTGCTGCTGCTGC TGCTGTTGTTGGCACCACTCTCGACGAAGACGTCAAACGTGAGACAGAGC TGGCAGAGCGATTCCACGCCGAGACGGCGAGGCAGGTGGAGGGCCTGACG TCGGACCAGAGGAGAGCATTGGAAAGAGTCAGAGAGGCATTGTACGGCCC AGCTGTGTGTGAGAAGAGGATAAGAGCAGTGGACGAGCTGGCGGTGTGCG GGGACCGAGATGCGATGATGTTGTCGTTTTTGCAACGAAAGAATTATGAT GCGGAGGTGGCTCTCAAGAGTTTTGAGAGAGTTATCAGCTGGAGAATGGA AAATGAGATTGAGGATGTTTTTGAGGGAGGGCGGCTGGCGCGGGAGAAGG TGGAGAAGCATCGGGAGTGTTGGCCAACGGCATTCTATTTCACAAAGGAC AAGGAGGGGGACCCAGTGTTTGTGGACCGAATGGGGATTTTGGAACTGGC AAAGCTGAGGAAGGGAGAGGTGCAGTTGGATATACAGGACATGGTGTTGT ATTATGTCCAGACGATGGAGGGGAGGAGGAGGCTCCTTTTTCCCCATCTC AGCCGGCAGAGCGGGCGTCACATCACCTCCTACGTCAGTGTCGTGGATGT CTCTCACTTTGGTCCACAGCATTTCGGTCGGCACGCCCTCTCCTTCCTCG CGGCCATTGGCGCCGTGCATGACGACACCTATTCCGATCTGGTCAAGTCA ATGTATATTATCAACGCGCCGTTCTTCTTCCATAAAGTATTCCATCTCAT TTCATGCATGATGAACCAAGAGCTCAAAGACCGGCTGAAGGTGCTCAACC GAAAACAGAGTTTGGTAGAATTATCAAAAATCATGCCGAGCGATGTAGCG CAGGCCATCGTGGAGGGGAATCATGAAAAGGAGAGGGAGGAGGAGAGGAA GTTGCATGCGTTTTTGGATTATGCGGCGAGTAAGGGTCTGCATAAGAGAA GGTGGGGCTTGGAAGATGCATAG back to top
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