jgi.p|Nanoce1779_2|669125, mRNA_2539 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|669125
Unique Name	mRNA_2539
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2940
Alignment location	scaffold_5:601255..604194 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	669211
Track	FilteredModels2
ProteinId	669125

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:601255..604194 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669125	gene_2539	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669125	mRNA_2539-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2539	CDS_2539	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:601255..604194-
coding sequence from alignment at scaffold_5:601255..604194-

mRNA sequence

>mRNA_2539 ID=mRNA_2539|Name=jgi.p|Nanoce1779_2|669125|organism=Nannochloropsis oceanica|type=mRNA|length=2940bp
CCAGTAAGCAAAACAAAGATAGTACTTGGAGTTGACCTCTTGTTGCCGTT
TTATTCTTTGGGAACCCTATGCCAAATGTAGTCCTTAGAACTTATTATTC
TTTTGAAGCAATATAATATGCAGCAAGCTAAAGACACACACCAACCTACA
TCAAACTCCACACATTACACAGCGCCTGTGCGACAAGGACAAGATGCCGC
TCAAGAAGTCAGCGCTAGAGCTCGCTAAAGAGGAGCAGGCAATGGCTCTG
GAGCAGCGGGTGCTTGCGCGCCTAGAGAGAGAGTCGAAGTCTCCGAATTC
TCAGAAGCACAATAGCACCAGTCCTAGGCGGGCCACGGGGCATCTCCCAG
CCACCATGCGTCGCCTCTCGTCTGCCATTGCGATGTCACGGTCCCAGACG
AAAAAGGAGCGGGAGAGGGAGGAGGAGCAGGAGGAGGACCAGGAGGAGGA
CCAGGAGGAGGAGCAGGAGGAGGAAGTGGAGGAGGCGGAGATGGAGGAGC
AGGGAAAGGAGGAGAAGGAGAAGGAAAAGGAAGTGGACAGTCGCATGAAA
GCACGACCATCTCAAAAGAAAAGAAGTCTCAAGCCGATGGCCGGTAAGAG
GGACGGCGGTGGAGATTGGAGCGGCAGCGGGGCACGGAAACGAGGAACTG
CCACGGGTGCGGCTGCCCATCGTCAGTCTAACGGCAAGAGGGTTCGACTC
CTTCGACTCCAGCGAGAAGAGGAGTACAAGGACGAGGTAGAGGACGGGGA
AGGAGGATATGTGCCGCCGTCTTCTCCGCTTGGTGTGAGCGCGCTACGAC
GCGTCGGCCAATCCCCGTGTGCTGCCGAGGAGGAACAGGATCAGGATCAT
GAGGAAGAAGATGATGGACACGATCTGGACCCTCGATTTTATCATACCAA
CCTCCTTCGCTCGCCAGCATCAGCACCGATGGAGGAGGAAAGGACAAGAG
AAGGCGATGAGATGGACGTGGATGAGGTGGATGGACGCTTCTACAACGCA
CCTCGTGCCGCACCTGCCGCACCTAGTTCCGCGGTAGTCGGCGTGCACAA
TCCTCCTCGGCACCTGTCGTGGAGCGCGCCTTCCTTTCGCTTCCCCAGTT
TCTTACGACCTGAGTCGGCAGCCTTACCACCGTCCGAGAGCCCATCCAAG
CGCGTGGCCTTTCGAGAGCAGCTTGGGGAGCGCTGGCCCGAGCACATGCA
GGAGCTGCCAAGCTTGTCGTCTCGGCGGGCATCAGCAGCAGCGGCTTCGG
CTTCTTGTTCTTCCTCCTACTACTCCAACTCGTCATCGTCCTCGCCGGCA
ATGCGGCACTCTAGCCGGTTTTCGGGCACCCCGCATCCAGTCATTCCCCC
GTGGCAGTCTCCGGTGCCCCGCCCCGCTCGTGGACTCATGAAGAAGGCAA
CTCCGGTCGAAGGACGAGAAGTGATAGAAGAAAGCGGACGATCGGTGTCA
GATCGCATGAGTTTTACTTCCTTACTTCACCGCAGAGAGGCTGGGGCCCG
CATCAACAACGGTACTCAACCCCGGCGGCGGCAGGATGAGCAGAGCCAGC
AGCAGCAGCAGCAGCAGCAGCACAAATATCAGCAACTACATCAACCGCAC
CAGCTTCTCCCTGGTTGGCCCTCGATGCTGATGAAGGATGAGGTCTTCTC
TTCCGGGATGCGTCGCCTGAAGATCTTTTCTCTGGGCCTGACCCTGCTGT
CTTTCTGGCTGCTGTGCCTGGGGGGCGTGCTCAAAGTGGGCTTGGCATTG
TGGGTCAGGAAGGAGTGCCCACCGGGTCACGTTCGAGGCGACATTTTGGG
ACTGTGGGGGGAGTGTGTCGTCCCGCAGTCCACCGTCATCAAGCTCGTCA
AGTCGGTGCAGCGGCGCACAGTGGAAGATCTGTGTAAGGATCCGCGGGCG
GCAGCAGGGGCAGAGGGAGTGGGGTCATGGATAGGGAAGCAAATGACGGT
GAACGTGCCGCCGCGGTATCGGGAGGAAGAGTTGTGGGGCGATATCAGCA
TGCACAGCTACCCCTGGGGAGATTTAGCCTTGAGAGGTGTGGACCGTGAA
TGGAGAGGGCCTGATCTGGCCACGGATTACTACGTGCACTTGCGGGGGCG
GCCGGAGGTCATGGGTGCATTGTGGCGGCAAGGTGCAGTGCTTTGTCGAA
TCAAGGTGTTTCTCTATGAGATGTGGAATGTGCTCGCCGCGTTGTCGGTT
CTTTCGGGGCTCGTTCTGTCAGCCTTCCTCAAGGCGCGGGCGGAGATCCG
GCAACGGCAGCAAGTGGACAAGGTGAAACGGATGATAGTCAATATCCTGA
TTGCCGAGGGGGAGATTGCCATCGACCTCGCCAAGGCCGATTTGCTGCAT
GGCTTGGACCGGGATTACCGTGAACTTTGCCTGACTAAATCAAGACTCAA
GATCTTGTGGCCTGCGGTGGTGCGGGCGGTGGAGAGGGACCCGCGGGTAA
GCACGGCGCCTAGGGAAATGAAAGGTCGCGCTATGCCTCATTGGGTCTGG
CTAAGCAAAAGGCTTCCAAAGCGGATTCGATATGAAGAAGAGTGTGGGGG
ATTGGAGGGAGGAGAGGTTGGCAGTGATGTAGGAAAAGGAGGAAGAGGAG
GAGTAGAAGGAAGAATAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGA
GGAGGAGGCAGACGAGACAAAGGCTGGCTGCTTAGACACGAGAACAAGAG
AAACGAGGCCGGCGGGGATCGGCGTGGGGGCGGACGGTATGAGTCGGTGC
GTGCGGTGGTGATATAGACAGAAGAAGATACATGATACTACTACCCAGCT
GAGGAAGCGGTGGCCGAGATATTGTGAAGCAATCTGGAGAAGCAGGTATG
GAGAAAAAGATAGACTAGACACGACACGGAGGAATCTAAAGCAAAGTAAA
TAAATACATCAAAAGCAAATAAGGGAAGTAGTGCAAGTTG

protein sequence of jgi.p|Nanoce1779_2|669125

>mRNA_2539-protein ID=mRNA_2539-protein|Name=jgi.p|Nanoce1779_2|669125|organism=Nannochloropsis oceanica|type=polypeptide|length=858bp
MPLKKSALELAKEEQAMALEQRVLARLERESKSPNSQKHNSTSPRRATGH
LPATMRRLSSAIAMSRSQTKKEREREEEQEEDQEEDQEEEQEEEVEEAEM
EEQGKEEKEKEKEVDSRMKARPSQKKRSLKPMAGKRDGGGDWSGSGARKR
GTATGAAAHRQSNGKRVRLLRLQREEEYKDEVEDGEGGYVPPSSPLGVSA
LRRVGQSPCAAEEEQDQDHEEEDDGHDLDPRFYHTNLLRSPASAPMEEER
TREGDEMDVDEVDGRFYNAPRAAPAAPSSAVVGVHNPPRHLSWSAPSFRF
PSFLRPESAALPPSESPSKRVAFREQLGERWPEHMQELPSLSSRRASAAA
ASASCSSSYYSNSSSSSPAMRHSSRFSGTPHPVIPPWQSPVPRPARGLMK
KATPVEGREVIEESGRSVSDRMSFTSLLHRREAGARINNGTQPRRRQDEQ
SQQQQQQQQHKYQQLHQPHQLLPGWPSMLMKDEVFSSGMRRLKIFSLGLT
LLSFWLLCLGGVLKVGLALWVRKECPPGHVRGDILGLWGECVVPQSTVIK
LVKSVQRRTVEDLCKDPRAAAGAEGVGSWIGKQMTVNVPPRYREEELWGD
ISMHSYPWGDLALRGVDREWRGPDLATDYYVHLRGRPEVMGALWRQGAVL
CRIKVFLYEMWNVLAALSVLSGLVLSAFLKARAEIRQRQQVDKVKRMIVN
ILIAEGEIAIDLAKADLLHGLDRDYRELCLTKSRLKILWPAVVRAVERDP
RVSTAPREMKGRAMPHWVWLSKRLPKRIRYEEECGGLEGGEVGSDVGKGG
RGGVEGRIGGGGGEGGGGGGGGRRDKGWLLRHENKRNEAGGDRRGGGRYE
SVRAVVI*

mRNA from alignment at scaffold_5:601255..604194-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2539 ID=mRNA_2539|Name=jgi.p|Nanoce1779_2|669125|organism=Nannochloropsis oceanica|type=mRNA|length=2940bp|location=Sequence derived from alignment at scaffold_5:601255..604194- (Nannochloropsis oceanica)
CCAGTAAGCAAAACAAAGATAGTACTTGGAGTTGACCTCTTGTTGCCGTT
TTATTCTTTGGGAACCCTATGCCAAATGTAGTCCTTAGAACTTATTATTC
TTTTGAAGCAATATAATATGCAGCAAGCTAAAGACACACACCAACCTACA
TCAAACTCCACACATTACACAGCGCCTGTGCGACAAGGACAAGATGCCGC
TCAAGAAGTCAGCGCTAGAGCTCGCTAAAGAGGAGCAGGCAATGGCTCTG
GAGCAGCGGGTGCTTGCGCGCCTAGAGAGAGAGTCGAAGTCTCCGAATTC
TCAGAAGCACAATAGCACCAGTCCTAGGCGGGCCACGGGGCATCTCCCAG
CCACCATGCGTCGCCTCTCGTCTGCCATTGCGATGTCACGGTCCCAGACG
AAAAAGGAGCGGGAGAGGGAGGAGGAGCAGGAGGAGGACCAGGAGGAGGA
CCAGGAGGAGGAGCAGGAGGAGGAAGTGGAGGAGGCGGAGATGGAGGAGC
AGGGAAAGGAGGAGAAGGAGAAGGAAAAGGAAGTGGACAGTCGCATGAAA
GCACGACCATCTCAAAAGAAAAGAAGTCTCAAGCCGATGGCCGGTAAGAG
GGACGGCGGTGGAGATTGGAGCGGCAGCGGGGCACGGAAACGAGGAACTG
CCACGGGTGCGGCTGCCCATCGTCAGTCTAACGGCAAGAGGGTTCGACTC
CTTCGACTCCAGCGAGAAGAGGAGTACAAGGACGAGGTAGAGGACGGGGA
AGGAGGATATGTGCCGCCGTCTTCTCCGCTTGGTGTGAGCGCGCTACGAC
GCGTCGGCCAATCCCCGTGTGCTGCCGAGGAGGAACAGGATCAGGATCAT
GAGGAAGAAGATGATGGACACGATCTGGACCCTCGATTTTATCATACCAA
CCTCCTTCGCTCGCCAGCATCAGCACCGATGGAGGAGGAAAGGACAAGAG
AAGGCGATGAGATGGACGTGGATGAGGTGGATGGACGCTTCTACAACGCA
CCTCGTGCCGCACCTGCCGCACCTAGTTCCGCGGTAGTCGGCGTGCACAA
TCCTCCTCGGCACCTGTCGTGGAGCGCGCCTTCCTTTCGCTTCCCCAGTT
TCTTACGACCTGAGTCGGCAGCCTTACCACCGTCCGAGAGCCCATCCAAG
CGCGTGGCCTTTCGAGAGCAGCTTGGGGAGCGCTGGCCCGAGCACATGCA
GGAGCTGCCAAGCTTGTCGTCTCGGCGGGCATCAGCAGCAGCGGCTTCGG
CTTCTTGTTCTTCCTCCTACTACTCCAACTCGTCATCGTCCTCGCCGGCA
ATGCGGCACTCTAGCCGGTTTTCGGGCACCCCGCATCCAGTCATTCCCCC
GTGGCAGTCTCCGGTGCCCCGCCCCGCTCGTGGACTCATGAAGAAGGCAA
CTCCGGTCGAAGGACGAGAAGTGATAGAAGAAAGCGGACGATCGGTGTCA
GATCGCATGAGTTTTACTTCCTTACTTCACCGCAGAGAGGCTGGGGCCCG
CATCAACAACGGTACTCAACCCCGGCGGCGGCAGGATGAGCAGAGCCAGC
AGCAGCAGCAGCAGCAGCAGCACAAATATCAGCAACTACATCAACCGCAC
CAGCTTCTCCCTGGTTGGCCCTCGATGCTGATGAAGGATGAGGTCTTCTC
TTCCGGGATGCGTCGCCTGAAGATCTTTTCTCTGGGCCTGACCCTGCTGT
CTTTCTGGCTGCTGTGCCTGGGGGGCGTGCTCAAAGTGGGCTTGGCATTG
TGGGTCAGGAAGGAGTGCCCACCGGGTCACGTTCGAGGCGACATTTTGGG
ACTGTGGGGGGAGTGTGTCGTCCCGCAGTCCACCGTCATCAAGCTCGTCA
AGTCGGTGCAGCGGCGCACAGTGGAAGATCTGTGTAAGGATCCGCGGGCG
GCAGCAGGGGCAGAGGGAGTGGGGTCATGGATAGGGAAGCAAATGACGGT
GAACGTGCCGCCGCGGTATCGGGAGGAAGAGTTGTGGGGCGATATCAGCA
TGCACAGCTACCCCTGGGGAGATTTAGCCTTGAGAGGTGTGGACCGTGAA
TGGAGAGGGCCTGATCTGGCCACGGATTACTACGTGCACTTGCGGGGGCG
GCCGGAGGTCATGGGTGCATTGTGGCGGCAAGGTGCAGTGCTTTGTCGAA
TCAAGGTGTTTCTCTATGAGATGTGGAATGTGCTCGCCGCGTTGTCGGTT
CTTTCGGGGCTCGTTCTGTCAGCCTTCCTCAAGGCGCGGGCGGAGATCCG
GCAACGGCAGCAAGTGGACAAGGTGAAACGGATGATAGTCAATATCCTGA
TTGCCGAGGGGGAGATTGCCATCGACCTCGCCAAGGCCGATTTGCTGCAT
GGCTTGGACCGGGATTACCGTGAACTTTGCCTGACTAAATCAAGACTCAA
GATCTTGTGGCCTGCGGTGGTGCGGGCGGTGGAGAGGGACCCGCGGGTAA
GCACGGCGCCTAGGGAAATGAAAGGTCGCGCTATGCCTCATTGGGTCTGG
CTAAGCAAAAGGCTTCCAAAGCGGATTCGATATGAAGAAGAGTGTGGGGG
ATTGGAGGGAGGAGAGGTTGGCAGTGATGTAGGAAAAGGAGGAAGAGGAG
GAGTAGAAGGAAGAATAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGA
GGAGGAGGCAGACGAGACAAAGGCTGGCTGCTTAGACACGAGAACAAGAG
AAACGAGGCCGGCGGGGATCGGCGTGGGGGCGGACGGTATGAGTCGGTGC
GTGCGGTGGTGATATAGACAGAAGAAGATACATGATACTACTACCCAGCT
GAGGAAGCGGTGGCCGAGATATTGTGAAGCAATCTGGAGAAGCAGGTATG
GAGAAAAAGATAGACTAGACACGACACGGAGGAATCTAAAGCAAAGTAAA
TAAATACATCAAAAGCAAATAAGGGAAGTAGTGCAAGTTG

Coding sequence (CDS) from alignment at scaffold_5:601255..604194-

>mRNA_2539 ID=mRNA_2539|Name=jgi.p|Nanoce1779_2|669125|organism=Nannochloropsis oceanica|type=CDS|length=2574bp|location=Sequence derived from alignment at scaffold_5:601255..604194- (Nannochloropsis oceanica)
ATGCCGCTCAAGAAGTCAGCGCTAGAGCTCGCTAAAGAGGAGCAGGCAAT
GGCTCTGGAGCAGCGGGTGCTTGCGCGCCTAGAGAGAGAGTCGAAGTCTC
CGAATTCTCAGAAGCACAATAGCACCAGTCCTAGGCGGGCCACGGGGCAT
CTCCCAGCCACCATGCGTCGCCTCTCGTCTGCCATTGCGATGTCACGGTC
CCAGACGAAAAAGGAGCGGGAGAGGGAGGAGGAGCAGGAGGAGGACCAGG
AGGAGGACCAGGAGGAGGAGCAGGAGGAGGAAGTGGAGGAGGCGGAGATG
GAGGAGCAGGGAAAGGAGGAGAAGGAGAAGGAAAAGGAAGTGGACAGTCG
CATGAAAGCACGACCATCTCAAAAGAAAAGAAGTCTCAAGCCGATGGCCG
GTAAGAGGGACGGCGGTGGAGATTGGAGCGGCAGCGGGGCACGGAAACGA
GGAACTGCCACGGGTGCGGCTGCCCATCGTCAGTCTAACGGCAAGAGGGT
TCGACTCCTTCGACTCCAGCGAGAAGAGGAGTACAAGGACGAGGTAGAGG
ACGGGGAAGGAGGATATGTGCCGCCGTCTTCTCCGCTTGGTGTGAGCGCG
CTACGACGCGTCGGCCAATCCCCGTGTGCTGCCGAGGAGGAACAGGATCA
GGATCATGAGGAAGAAGATGATGGACACGATCTGGACCCTCGATTTTATC
ATACCAACCTCCTTCGCTCGCCAGCATCAGCACCGATGGAGGAGGAAAGG
ACAAGAGAAGGCGATGAGATGGACGTGGATGAGGTGGATGGACGCTTCTA
CAACGCACCTCGTGCCGCACCTGCCGCACCTAGTTCCGCGGTAGTCGGCG
TGCACAATCCTCCTCGGCACCTGTCGTGGAGCGCGCCTTCCTTTCGCTTC
CCCAGTTTCTTACGACCTGAGTCGGCAGCCTTACCACCGTCCGAGAGCCC
ATCCAAGCGCGTGGCCTTTCGAGAGCAGCTTGGGGAGCGCTGGCCCGAGC
ACATGCAGGAGCTGCCAAGCTTGTCGTCTCGGCGGGCATCAGCAGCAGCG
GCTTCGGCTTCTTGTTCTTCCTCCTACTACTCCAACTCGTCATCGTCCTC
GCCGGCAATGCGGCACTCTAGCCGGTTTTCGGGCACCCCGCATCCAGTCA
TTCCCCCGTGGCAGTCTCCGGTGCCCCGCCCCGCTCGTGGACTCATGAAG
AAGGCAACTCCGGTCGAAGGACGAGAAGTGATAGAAGAAAGCGGACGATC
GGTGTCAGATCGCATGAGTTTTACTTCCTTACTTCACCGCAGAGAGGCTG
GGGCCCGCATCAACAACGGTACTCAACCCCGGCGGCGGCAGGATGAGCAG
AGCCAGCAGCAGCAGCAGCAGCAGCAGCACAAATATCAGCAACTACATCA
ACCGCACCAGCTTCTCCCTGGTTGGCCCTCGATGCTGATGAAGGATGAGG
TCTTCTCTTCCGGGATGCGTCGCCTGAAGATCTTTTCTCTGGGCCTGACC
CTGCTGTCTTTCTGGCTGCTGTGCCTGGGGGGCGTGCTCAAAGTGGGCTT
GGCATTGTGGGTCAGGAAGGAGTGCCCACCGGGTCACGTTCGAGGCGACA
TTTTGGGACTGTGGGGGGAGTGTGTCGTCCCGCAGTCCACCGTCATCAAG
CTCGTCAAGTCGGTGCAGCGGCGCACAGTGGAAGATCTGTGTAAGGATCC
GCGGGCGGCAGCAGGGGCAGAGGGAGTGGGGTCATGGATAGGGAAGCAAA
TGACGGTGAACGTGCCGCCGCGGTATCGGGAGGAAGAGTTGTGGGGCGAT
ATCAGCATGCACAGCTACCCCTGGGGAGATTTAGCCTTGAGAGGTGTGGA
CCGTGAATGGAGAGGGCCTGATCTGGCCACGGATTACTACGTGCACTTGC
GGGGGCGGCCGGAGGTCATGGGTGCATTGTGGCGGCAAGGTGCAGTGCTT
TGTCGAATCAAGGTGTTTCTCTATGAGATGTGGAATGTGCTCGCCGCGTT
GTCGGTTCTTTCGGGGCTCGTTCTGTCAGCCTTCCTCAAGGCGCGGGCGG
AGATCCGGCAACGGCAGCAAGTGGACAAGGTGAAACGGATGATAGTCAAT
ATCCTGATTGCCGAGGGGGAGATTGCCATCGACCTCGCCAAGGCCGATTT
GCTGCATGGCTTGGACCGGGATTACCGTGAACTTTGCCTGACTAAATCAA
GACTCAAGATCTTGTGGCCTGCGGTGGTGCGGGCGGTGGAGAGGGACCCG
CGGGTAAGCACGGCGCCTAGGGAAATGAAAGGTCGCGCTATGCCTCATTG
GGTCTGGCTAAGCAAAAGGCTTCCAAAGCGGATTCGATATGAAGAAGAGT
GTGGGGGATTGGAGGGAGGAGAGGTTGGCAGTGATGTAGGAAAAGGAGGA
AGAGGAGGAGTAGAAGGAAGAATAGGAGGAGGAGGAGGAGAAGGAGGAGG
AGGAGGAGGAGGAGGCAGACGAGACAAAGGCTGGCTGCTTAGACACGAGA
ACAAGAGAAACGAGGCCGGCGGGGATCGGCGTGGGGGCGGACGGTATGAG
TCGGTGCGTGCGGTGGTGATATAG

Synonyms

Publications