jgi.p|Nanoce1779_2|643234, mRNA_10503 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|643234
Unique NamemRNA_10503
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length441
Alignment locationscaffold_52:111953..112605 +

Link to JBrowse

Properties
Property NameValue
TranscriptId643320
TrackFilteredModels2
ProteinId643234
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:111953..112605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643234gene_10503Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643234mRNA_10503-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10503CDS_10503Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10503 ID=mRNA_10503|Name=jgi.p|Nanoce1779_2|643234|organism=Nannochloropsis oceanica|type=mRNA|length=441bp
ATGGCCATCAAAAGGGCCAATGATAGGGTCGGTAGCATGACCGGTCGTGG
AGTCCTGAGGTATGCGCTGACCATCCTTGCCTTGATGCTGGCCTCTCCTT
TCAATCAAGGCGGCCCTGTGGAGGCGACAACTTGCCCTTTGTCTCTCAAC
TTCAAAACTTGCAAGCATGTCGTGGGTAGATCCATAAAAGTGACCTATAT
GCTGGCCAACACCGGGTACGAGAAGATCCGGGGCGCGGCGATACGGATCG
GGCTGCCCAGTCAAAATATGACAAACAATATTAAGGCCTCCAAGGCCCGC
AAGGCACAAGATCTTGCCATTGAACCAGGCTATGCTGTGTACTGGCTTAA
TCCCGACCGCGGCAAGCAATGTGACGCAGTCTTTTCTGCTCATTGGTGTG
AGCGAGCAGTGTTTGGAGGCAGGACGCCAGGCTCCTTTTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|643234

>mRNA_10503-protein ID=mRNA_10503-protein|Name=jgi.p|Nanoce1779_2|643234|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MAIKRANDRVGSMTGRGVLRYALTILALMLASPFNQGGPVEATTCPLSLN
FKTCKHVVGRSIKVTYMLANTGYEKIRGAAIRIGLPSQNMTNNIKASKAR
KAQDLAIEPGYAVYWLNPDRGKQCDAVFSAHWCERAVFGGRTPGSF*
back to top

mRNA from alignment at scaffold_52:111953..112605+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10503 ID=mRNA_10503|Name=jgi.p|Nanoce1779_2|643234|organism=Nannochloropsis oceanica|type=mRNA|length=653bp|location=Sequence derived from alignment at scaffold_52:111953..112605+ (Nannochloropsis oceanica)
ATGGCCATCAAAAGGGCCAATGATAGGGTCGGTAGCATGACCGGTCGTGG
AGTCCTGAGGTATGCGCTGACCATCCTTGCCTTGATGCTGGCCTCTCCTT
TCAATCAAGGCGGCCCTGTGGAGGCGACAACTTGCCCTTTGTCTCTCAAC
TTCAAAACTTGCAAGCATGTCGTGGGTAGATCCATAAAAGTGACCTATAT
GCTGGCCAACACCGGGTACGAGAAGATCCGGGGCGCGGCGATACGGATCG
GGCTGCCCAGTCAAAATATGACAAACAATATTAAGGCCTCCAAGGCCCGC
AAGGCACAAGATCTTGCCATTGAACCAGGCTATGCTGTGTACTGGCTTAA
TGTAGATCTGCCCCGACAGAAACGACTGAGATTTACCGTGAGCTTCAGGC
TTGCCACAAAGACCTGCTTTGCCCGAACAATCAATTTTCCTGCATATGTT
TACCTGATCGACTCTGTTAGTGGGTCAGCAACATGTCCGTCGCCAGCGAC
ATCCATTGATGTCCATGTCAAGGGCATCTCCTCTAAGAGGCGGCCTTGCC
CTACCACACCCAGCCCGACCGCGGCAAGCAATGTGACGCAGTCTTTTCTG
CTCATTGGTGTGAGCGAGCAGTGTTTGGAGGCAGGACGCCAGGCTCCTTT
TGA
back to top

Coding sequence (CDS) from alignment at scaffold_52:111953..112605+

>mRNA_10503 ID=mRNA_10503|Name=jgi.p|Nanoce1779_2|643234|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_52:111953..112605+ (Nannochloropsis oceanica)
ATGGCCATCAAAAGGGCCAATGATAGGGTCGGTAGCATGACCGGTCGTGG
AGTCCTGAGGTATGCGCTGACCATCCTTGCCTTGATGCTGGCCTCTCCTT
TCAATCAAGGCGGCCCTGTGGAGGCGACAACTTGCCCTTTGTCTCTCAAC
TTCAAAACTTGCAAGCATGTCGTGGGTAGATCCATAAAAGTGACCTATAT
GCTGGCCAACACCGGGTACGAGAAGATCCGGGGCGCGGCGATACGGATCG
GGCTGCCCAGTCAAAATATGACAAACAATATTAAGGCCTCCAAGGCCCGC
AAGGCACAAGATCTTGCCATTGAACCAGGCTATGCTGTGTACTGGCTTAA
TCCCGACCGCGGCAAGCAATGTGACGCAGTCTTTTCTGCTCATTGGTGTG
AGCGAGCAGTGTTTGGAGGCAGGACGCCAGGCTCCTTTTGAATGGCCATC
AAAAGGGCCAATGATAGGGTCGGTAGCATGACCGGTCGTGGAGTCCTGAG
GTATGCGCTGACCATCCTTGCCTTGATGCTGGCCTCTCCTTTCAATCAAG
GCGGCCCTGTGGAGGCGACAACTTGCCCTTTGTCTCTCAACTTCAAAACT
TGCAAGCATGTCGTGGGTAGATCCATAAAAGTGACCTATATGCTGGCCAA
CACCGGGTACGAGAAGATCCGGGGCGCGGCGATACGGATCGGGCTGCCCA
GTCAAAATATGACAAACAATATTAAGGCCTCCAAGGCCCGCAAGGCACAA
GATCTTGCCATTGAACCAGGCTATGCTGTGTACTGGCTTAATCCCGACCG
CGGCAAGCAATGTGACGCAGTCTTTTCTGCTCATTGGTGTGAGCGAGCAG
TGTTTGGAGGCAGGACGCCAGGCTCCTTTTGA
back to top
Synonyms
Publications