jgi.p|Nanoce1779_2|356673, mRNA_10785 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|356673
Unique Name	mRNA_10785
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1030
Alignment location	scaffold_59:33115..34803 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	356759
Track	FilteredModels2
ProteinId	356673

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_59	supercontig	scaffold_59:33115..34803 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|356673	gene_10785	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|356673	mRNA_10785-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10785	CDS_10785	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_59:33115..34803+
coding sequence from alignment at scaffold_59:33115..34803+

mRNA sequence

>mRNA_10785 ID=mRNA_10785|Name=jgi.p|Nanoce1779_2|356673|organism=Nannochloropsis oceanica|type=mRNA|length=1030bp
TTCAAGAAACACTTGAAGGAAGGCGGGAAGGAGGGTGGGGTGTATGACCG
GAAGCCGGCCTATGATGAGGAGTATGTGGCAGAGCTTTTGAGGCATGCCC
AAGAGTTGTTTGATTTCGGCGTCCGTTGCCCCGGCCACTATGTTCTGGAT
GGGAAGGTCCCGGCCGACTGCTGCTATGGCGGGGGCCCGTGGGAAGACGA
AGAAGCGTGGGCCGCCCTGTGGCTGTACCAGGCCACGGGGACAGAGAGCT
ACCTCGAGCATGCCAAGCGGACCTACGCTCCAAGACCCGTTCAATGCGTG
GACGCAGTTCGGGTGGGACAACAAGGAGGCAGGAGTGAACCTCCTCCTCT
ACTCCCTCACACAAGAGGAGCAGTACAAGCGGGCATTCACCACGCACATG
GACGGATGGGCCACCGCAGACCCCATCCCACGAACACCTGCCGGCCTCTC
CTATGTCTCGCAGTGGGGGAGTCTACGCGTAGCAGCCAACCAAGCCTTCC
TCGCCCTCATTGCTGCCGAGGCCGGCCTCCATCCCCAACCTTATCGAAAT
TATGCCAAGAGCCAGGTGTACTACATTCTTGGAGACTGCTGCCGCAACGC
CACCACAGGAGAAGTCATGAAGACCTATCAAATGGGCTTTGGTCCCGTCC
ATCCCCGCAACCCCCACCACCGCGCCACGGCCTGTGACTTGGAAGGTAGA
GAGGGAGAGGAGGGAGGGAGGGGGGACTTCAAGGCAGAGAGAGGAGGGAA
GGGAAAGAGTAGAGTGTAAATATGGTGTTGATCGGCCAGATCTCGGTTTC
TTAAATCTCTCCTTCCCTCCCTCCCTGCCTCTCTCCCTCCTTCCCTCCCT
CCAGGCAATTGCGAGTGCAGCGATCGCGGCTCGTTCCACATCTTGTACGG
AGCCATCGTGGGCGGGCCCAGGGAAGACGACTCGCACCACGATAAATGCG
CGGACTTCATCACGTAAGGGGATGAGGGGGGATGGGGAAGGGAAGGAGAG
AAGGAGGAGGAAAGGGAGGGAGGGAGGGAG

protein sequence of jgi.p|Nanoce1779_2|356673

>mRNA_10785-protein ID=mRNA_10785-protein|Name=jgi.p|Nanoce1779_2|356673|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MPKSCLISASVAPATMFWMGRSRPTAAMAGARGKTKKRGPPCGCTRPRGQ
RATSSMPSGPTLQDPFNAWTQFGWDNKEAGVNLLLYSLTQEEQYKRAFTT
HMDGWATADPIPRTPAGLSYVSQWGSLRVAANQAFLALIAAEAGLHPQPY
RNYAKSQVYYILGDCCRNATTGEVMKTYQMGFGPVHPRNPHHRATACDLE
GREGEEGGRGDFKAERGGKGKSRV*

mRNA from alignment at scaffold_59:33115..34803+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10785 ID=mRNA_10785|Name=jgi.p|Nanoce1779_2|356673|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp|location=Sequence derived from alignment at scaffold_59:33115..34803+ (Nannochloropsis oceanica)
TTCAAGAAACACTTGAAGGAAGGCGGGAAGGAGGGTGGGGTGTATGACCG
GAAGCCGGCCTATGATGAGGAGTATGTGGCAGAGCTTTTGAGGCATGCCC
AAGAGTTGTTTGATTTCGGCGTCCGTTGCCCCGGCCACTATGTTCTGGAT
GGGAAGGTAGGGAGGGAGGGACGGAGGGAGGGAAGAAAGCAGGAAGGGAG
GGGAAGACTGCGGACTTCAACTTCAACTTTATGGGCAAGGGCCGGAAAAT
GCGACACCCCAACTCACCTATCTCTCCCTCCCTCTCTCCCTCGTCAGGTC
CCGGCCGACTGCTGCTATGGCGGGGGCCCGTGGGAAGACGAAGAAGCGTG
GGCCGCCCTGTGGCTGTACCAGGCCACGGGGACAGAGAGCTACCTCGAGC
ATGCCAAGCGGACCTACGGCAAGTGCTGCTCCCCGTACAAAGTAGGGTGG
GAGGGCGGGAAGGAATGTGGGGGGGGGGGGATGATGAATGGTGTGTGTGT
GTGGCTGTATGAAGTCACGGAGACGAAGAAACTTTTCTCGGGTATCTTTT
TTTTTAAATCAATGTATAATCAAAAATCAACTATTTGTGGATTTTTGGGG
GTATTTTCCTGATGTTATTTAAATAAAAAAACCGAATATTTAATGTATTT
CATTCATTCACCAATTCAATCCTGATTTCCTTTCACGACAGCTCCAAGAC
CCGTTCAATGCGTGGACGCAGTTCGGGTGGGACAACAAGGAGGCAGGAGT
GAACCTCCTCCTCTACTCCCTCACACAAGAGGAGCAGTACAAGCGGGCAT
TCACCACGCACATGGACGGATGGGCCACCGCAGACCCCATCCCACGAACA
CCTGCCGGCCTCTCCTATGTCTCGCAGTGGGGGAGTCTACGCGTAGCAGG
TACGGGGAGATTTTTCAAAAAAACTCCTTTTTTCCCTCCCCCTCTTTCTC
TCTTTCGCGCCATTTTTGGGGTCGCACGCTCTTAATCATCATCCCAACTA
ACCCTCCCTCCTTCCCTCCCTCCCTCTCAGCCAACCAAGCCTTCCTCGCC
CTCATTGCTGCCGAGGCCGGCCTCCATCCCCAACCTTATCGAAATTATGC
CAAGAGCCAGGTGTACTACATTCTTGGAGACTGCTGCCGCAACGCCACCA
CAGGAGAAGGTACACCCTCCCTCCCTCCGTCGCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTTATTCTTCAACCACGGAATCTATTTCATGCCCCTCCCT
CCTTCGCTCCCTCCCCTCCCAAGTCATGAAGACCTATCAAATGGGCTTTG
GTCCCGTCCATCCCCGCAACCCCCACCACCGCGCCACGGCCTGTGACTTG
GAAGGTAGAGAGGGAGAGGAGGGAGGGAGGGGGGACTTCAAGGCAGAGAG
AGGAGGGAAGGGAAAGAGTAGAGTGTAAATATGGTGTTGATCGGCCAGAT
CTCGGTTTCTTAAATCTCTCCTTCCCTCCCTCCCTGCCTCTCTCCCTCCT
TCCCTCCCTCCAGGCAATTGCGAGTGCAGCGATCGCGGCTCGTTCCACAT
CTTGTACGGAGCCATCGTGGGCGGGCCCAGGGAAGACGACTCGCACCACG
ATAAATGCGCGGACTTCATCACGTAAGGGGATGAGGGGGGATGGGGAAGG
GAAGGAGAGAAGGAGGAGGAAAGGGAGGGAGGGAGGGAG

Coding sequence (CDS) from alignment at scaffold_59:33115..34803+

>mRNA_10785 ID=mRNA_10785|Name=jgi.p|Nanoce1779_2|356673|organism=Nannochloropsis oceanica|type=CDS|length=3375bp|location=Sequence derived from alignment at scaffold_59:33115..34803+ (Nannochloropsis oceanica)
ATGCCCAAGAGTTGTTTGATTTCGGCGTCCGTTGCCCCGGCCACTATGTT
CTGGATGGGAAGGTCCCGGCCGACTGCTGCTATGGCGGGGGCCCGTGGGA
AGACGAAGAAGCGTGGGCCGCCCTGTGGCTGTACCAGGCCACGGGGACAG
AGAGCTACCTCGAGCATGCCAAGCGGACCTACGCTCCAAGACCCGTTCAA
TGCGTGGACGCAGTTCGGGTGGGACAACAAGGAGGCAGGAGTGAACCTCC
TCCTCTACTCCCTCACACAAGAGGAGCAGTACAAGCGGGCATTCACCACG
CACATGGACGGATGGGCCACCGCAGACCCCATCCCACGAACACCTGCCGG
CCTCTCCTATGTCTCGCAGTGGGGGAGTCTACGCGTAGCAGCCAACCAAG
CCTTCCTCGCCCTCATTGCTGCCGAGGCCGGCCTCCATCCCCAACCTTAT
CGAAATTATGCCAAGAGCCAGGTGTACTACATTCTTGGAGACTGCTGCCG
CAACGCCACCACAGGAGAAGTCATGAAGACCTATCAAATGGGCTTTGGTC
CCGTCCATCCCCGCAACCCCCACCACCGCGCCACGGCCTGTGACTTGGAA
GGTAGAGAGGGAGAGGAGGGAGGGAGGGGGGACTTCAAGGCAGAGAGAGG
AGGGAAGGGAAAGAGTAGAGTGTAAATGCCCAAGAGTTGTTTGATTTCGG
CGTCCGTTGCCCCGGCCACTATGTTCTGGATGGGAAGGTCCCGGCCGACT
GCTGCTATGGCGGGGGCCCGTGGGAAGACGAAGAAGCGTGGGCCGCCCTG
TGGCTGTACCAGGCCACGGGGACAGAGAGCTACCTCGAGCATGCCAAGCG
GACCTACGCTCCAAGACCCGTTCAATGCGTGGACGCAGTTCGGGTGGGAC
AACAAGGAGGCAGGAGTGAACCTCCTCCTCTACTCCCTCACACAAGAGGA
GCAGTACAAGCGGGCATTCACCACGCACATGGACGGATGGGCCACCGCAG
ACCCCATCCCACGAACACCTGCCGGCCTCTCCTATGTCTCGCAGTGGGGG
AGTCTACGCGTAGCAGCCAACCAAGCCTTCCTCGCCCTCATTGCTGCCGA
GGCCGGCCTCCATCCCCAACCTTATCGAAATTATGCCAAGAGCCAGGTGT
ACTACATTCTTGGAGACTGCTGCCGCAACGCCACCACAGGAGAAGTCATG
AAGACCTATCAAATGGGCTTTGGTCCCGTCCATCCCCGCAACCCCCACCA
CCGCGCCACGGCCTGTGACTTGGAAGGTAGAGAGGGAGAGGAGGGAGGGA
GGGGGGACTTCAAGGCAGAGAGAGGAGGGAAGGGAAAGAGTAGAGTGTAA
ATGCCCAAGAGTTGTTTGATTTCGGCGTCCGTTGCCCCGGCCACTATGTT
CTGGATGGGAAGGTCCCGGCCGACTGCTGCTATGGCGGGGGCCCGTGGGA
AGACGAAGAAGCGTGGGCCGCCCTGTGGCTGTACCAGGCCACGGGGACAG
AGAGCTACCTCGAGCATGCCAAGCGGACCTACGCTCCAAGACCCGTTCAA
TGCGTGGACGCAGTTCGGGTGGGACAACAAGGAGGCAGGAGTGAACCTCC
TCCTCTACTCCCTCACACAAGAGGAGCAGTACAAGCGGGCATTCACCACG
CACATGGACGGATGGGCCACCGCAGACCCCATCCCACGAACACCTGCCGG
CCTCTCCTATGTCTCGCAGTGGGGGAGTCTACGCGTAGCAGCCAACCAAG
CCTTCCTCGCCCTCATTGCTGCCGAGGCCGGCCTCCATCCCCAACCTTAT
CGAAATTATGCCAAGAGCCAGGTGTACTACATTCTTGGAGACTGCTGCCG
CAACGCCACCACAGGAGAAGTCATGAAGACCTATCAAATGGGCTTTGGTC
CCGTCCATCCCCGCAACCCCCACCACCGCGCCACGGCCTGTGACTTGGAA
GGTAGAGAGGGAGAGGAGGGAGGGAGGGGGGACTTCAAGGCAGAGAGAGG
AGGGAAGGGAAAGAGTAGAGTGTAAATGCCCAAGAGTTGTTTGATTTCGG
CGTCCGTTGCCCCGGCCACTATGTTCTGGATGGGAAGGTCCCGGCCGACT
GCTGCTATGGCGGGGGCCCGTGGGAAGACGAAGAAGCGTGGGCCGCCCTG
TGGCTGTACCAGGCCACGGGGACAGAGAGCTACCTCGAGCATGCCAAGCG
GACCTACGCTCCAAGACCCGTTCAATGCGTGGACGCAGTTCGGGTGGGAC
AACAAGGAGGCAGGAGTGAACCTCCTCCTCTACTCCCTCACACAAGAGGA
GCAGTACAAGCGGGCATTCACCACGCACATGGACGGATGGGCCACCGCAG
ACCCCATCCCACGAACACCTGCCGGCCTCTCCTATGTCTCGCAGTGGGGG
AGTCTACGCGTAGCAGCCAACCAAGCCTTCCTCGCCCTCATTGCTGCCGA
GGCCGGCCTCCATCCCCAACCTTATCGAAATTATGCCAAGAGCCAGGTGT
ACTACATTCTTGGAGACTGCTGCCGCAACGCCACCACAGGAGAAGTCATG
AAGACCTATCAAATGGGCTTTGGTCCCGTCCATCCCCGCAACCCCCACCA
CCGCGCCACGGCCTGTGACTTGGAAGGTAGAGAGGGAGAGGAGGGAGGGA
GGGGGGACTTCAAGGCAGAGAGAGGAGGGAAGGGAAAGAGTAGAGTGTAA
ATGCCCAAGAGTTGTTTGATTTCGGCGTCCGTTGCCCCGGCCACTATGTT
CTGGATGGGAAGGTCCCGGCCGACTGCTGCTATGGCGGGGGCCCGTGGGA
AGACGAAGAAGCGTGGGCCGCCCTGTGGCTGTACCAGGCCACGGGGACAG
AGAGCTACCTCGAGCATGCCAAGCGGACCTACGCTCCAAGACCCGTTCAA
TGCGTGGACGCAGTTCGGGTGGGACAACAAGGAGGCAGGAGTGAACCTCC
TCCTCTACTCCCTCACACAAGAGGAGCAGTACAAGCGGGCATTCACCACG
CACATGGACGGATGGGCCACCGCAGACCCCATCCCACGAACACCTGCCGG
CCTCTCCTATGTCTCGCAGTGGGGGAGTCTACGCGTAGCAGCCAACCAAG
CCTTCCTCGCCCTCATTGCTGCCGAGGCCGGCCTCCATCCCCAACCTTAT
CGAAATTATGCCAAGAGCCAGGTGTACTACATTCTTGGAGACTGCTGCCG
CAACGCCACCACAGGAGAAGTCATGAAGACCTATCAAATGGGCTTTGGTC
CCGTCCATCCCCGCAACCCCCACCACCGCGCCACGGCCTGTGACTTGGAA
GGTAGAGAGGGAGAGGAGGGAGGGAGGGGGGACTTCAAGGCAGAGAGAGG
AGGGAAGGGAAAGAGTAGAGTGTAA

Synonyms

Publications