jgi.p|Nanoce1779_2|363923, mRNA_3529 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|363923
Unique NamemRNA_3529
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1238
Alignment locationscaffold_6:582383..583698 +

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Properties
Property NameValue
TranscriptId364009
TrackFilteredModels2
ProteinId363923
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:582383..583698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|363923gene_3529Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|363923mRNA_3529-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3529CDS_3529Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3529 ID=mRNA_3529|Name=jgi.p|Nanoce1779_2|363923|organism=Nannochloropsis oceanica|type=mRNA|length=1238bp
TTGGGATTTCAGATGTCCCTCCTTTGTTTTTCTAATCCCACATCCTTTCC
CCACTCTTTGACGATCCAACCTTCTCTTTTTCCTTAGTGGCCCGCACTTA
CATCAAGATTAATTTTGGCAAATATTTGTTGGAGCTGGATATGCTTCACA
GCATCGAAGATGAAACTGTCGAGGCGCTCGCGAAAGGAGACGGGACTTTG
GTGCTCAAAATACGCAAAGACGAGGCTGACATCGCCAGTCGAGGCATCTG
GCCCACCTTGACCATTCCTTGTGAAACGTGCGACACAAAAATGCTCCGAA
TGCGACGGGCTGAAGCAGTGGAGGAACGGCGGGCCAAGGAACAGCACCTC
CGCGAGGTCGCCAAAGAAAAGAAGCAGGACTTGGAACGGCTGGTCCTCCA
GTCCCGCATAGACACTGAAATGGCGCAACAAGCATGCCAAGGAAAGCGAC
AGGCTGAAGAACGACACGCTTTCTTTTCGTCGGAAGTTGTGGCTATGGCT
TCGACGTCAAAAGCGTCGTCAACTTCCTCCTTCCCAGCAAAAGCTGTGAT
TCCCGGCGTGCGTAATGCCACTGAGGGGCCCACCACGGTAAACGTAGCAT
TTACCCCACGATTGTTTTCCACACCTATGCGAGAATCCAAAAAGGAGGAA
GAAGAATCCTGGGTCGATCGCCATAAACCAGAATGGCGCGAGCACCACCA
GGAGGGCCGAAATCAAATTGAACAGGCGGGCGAGCCCGATTCGTATGACA
TCCGAACCGTGAGCGAGAGGGACCCCATGTGGCTCAAGGCTCGGGGAGAC
AAGAGCTACTCTATCGGTGACTTTGAATCAGCCAGAAACGCCTATACTGC
AGCCTTGCAAAGCCAAGTCCGATTTAGCTCACGCCATTTGGTCCTCGGAA
ACCGTGCTTTGTCTTTTTTCCAAATTGGACAGTACCAGGAGTGTGTCGAA
GACTGCACCGAAGCTCTGGCGATCTTGCTCGTCGACGGGAACCATGACAA
CAGGGAGCACATCAGAAGCTTTCTACGCCTGCATGTTCGTCGTGCTGCAG
CCTTCTGTGAGCTAGGAGAATATACGAAGTCATTGAACGATTACAGGATG
GCGCTCTACTATGCTCCAGGGGACAAAAGCTTGGAGAAGGATATCAGGAT
CCTGGAGAAGCGACTCGAACTGGCGAGCGATACAAATAGGCGGATTGGCA
TTTGAGAGTAAAATGAGCGTGTGCAGAACGAAAAGGAA
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protein sequence of jgi.p|Nanoce1779_2|363923

>mRNA_3529-protein ID=mRNA_3529-protein|Name=jgi.p|Nanoce1779_2|363923|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MLHSIEDETVEALAKGDGTLVLKIRKDEADIASRGIWPTLTIPCETCDTK
MLRMRRAEAVEERRAKEQHLREVAKEKKQDLERLVLQSRIDTEMAQQACQ
GKRQAEERHAFFSSEVVAMASTSKASSTSSFPAKAVIPGVRNATEGPTTV
NVAFTPRLFSTPMRESKKEEEESWVDRHKPEWREHHQEGRNQIEQAGEPD
SYDIRTVSERDPMWLKARGDKSYSIGDFESARNAYTAALQSQVRFSSRHL
VLGNRALSFFQIGQYQECVEDCTEALAILLVDGNHDNREHIRSFLRLHVR
RAAAFCELGEYTKSLNDYRMALYYAPGDKSLEKDIRILEKRLELASDTNR
RIGI*
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mRNA from alignment at scaffold_6:582383..583698+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3529 ID=mRNA_3529|Name=jgi.p|Nanoce1779_2|363923|organism=Nannochloropsis oceanica|type=mRNA|length=1316bp|location=Sequence derived from alignment at scaffold_6:582383..583698+ (Nannochloropsis oceanica)
TTGGGATTTCAGATGTCCCTCCTTTGTTTTTCTAATCCCACATCCTTTCC
CCACTCTTTGACGATCCAACCTTCTCTTTTTCCTTAGTGGCCCGCACTTA
CATCAAGATTAATTTTGGCAAATATTTGTTGGAGCTGGATATGCTTCACA
GCATCGAAGATGAAACTGTCGAGGCGCTCGCGAAAGGAGACGGGACTTTG
GTGCTCAAAATACGCAAAGACGAGGCTGACATCGCCAGTCGAGGCATCTG
GCCCACCTTGACCATTCCTTGTGAAACGTGCGACACAAAAATGCTCCGAA
TGCGACGGGCTGAAGCAGTGGAGGAACGGCGGGCCAAGGAACAGCACCTC
CGCGAGGTCGCCAAAGAAAAGAAGCAGGACTTGGAACGGCTGGTCCTCCA
GTCCCGCATAGACACTGAAATGGCGCAACAAGCATGCCAAGGAAAGCGAC
AGGCTGAAGAACGACACGCTTTCTTTTCGTCGGAAGTTGTGGCTATGGCT
TCGACGTCAAAAGCGTCGTCAACTTCCTCCTTCCCAGCAAAAGCTGTGAT
TCCCGGCGTGCGTAATGCCACTGAGGGGCCCACCACGGTAAACGTAGCAT
TTACCCCACGATTGTTTTCCACACCTATGCGAGAATCCAAAAAGGAGGAA
GAAGAATCCTGGGTCGATCGCCATAAACCAGAATGGCGCGAGCACCACCA
GGAGGGCCGAAATCAAATTGAACAGGCGGGCGAGCCCGATTCGTATGACA
TCCGAACCGTGAGCGAGAGGGACCCCATGTGGCTCAAGGCTCGGGGAGAC
AAGAGCTACTCTATCGGTGACTTTGAATCAGCCAGAAACGCCTATACTGC
AGCCTTGCAAAGCCAAGTCCGATTTAGCTCACGCCATTTGGTCCTCGGAA
ACCGTGCTTTGTCTTTTTTCCAAATTGGACAGTACCAGGAGTGTGTCGAA
GACTGCACCGAAGCTCTGGCGATCTTGCTCGTCGACGGGAACCATGACAA
CAGGGAGCACATCAGAAGCTTTCTACGCCTGCATGTTCGTCGTGCTGCAG
CCTTCTGTGAGCTAGGAGAATATACGAAGTCATTGAACGATTACAGGTAA
AACTTGAAAGTAGAGAATTTGCTCCATGATGCGACCATTGAGCTTACCTG
GTCTCTTCCCCAAATACACTGCAGGATGGCGCTCTACTATGCTCCAGGGG
ACAAAAGCTTGGAGAAGGATATCAGGATCCTGGAGAAGCGACTCGAACTG
GCGAGCGATACAAATAGGCGGATTGGCATTTGAGAGTAAAATGAGCGTGT
GCAGAACGAAAAGGAA
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Coding sequence (CDS) from alignment at scaffold_6:582383..583698+

>mRNA_3529 ID=mRNA_3529|Name=jgi.p|Nanoce1779_2|363923|organism=Nannochloropsis oceanica|type=CDS|length=2130bp|location=Sequence derived from alignment at scaffold_6:582383..583698+ (Nannochloropsis oceanica)
ATGCTTCACAGCATCGAAGATGAAACTGTCGAGGCGCTCGCGAAAGGAGA
CGGGACTTTGGTGCTCAAAATACGCAAAGACGAGGCTGACATCGCCAGTC
GAGGCATCTGGCCCACCTTGACCATTCCTTGTGAAACGTGCGACACAAAA
ATGCTCCGAATGCGACGGGCTGAAGCAGTGGAGGAACGGCGGGCCAAGGA
ACAGCACCTCCGCGAGGTCGCCAAAGAAAAGAAGCAGGACTTGGAACGGC
TGGTCCTCCAGTCCCGCATAGACACTGAAATGGCGCAACAAGCATGCCAA
GGAAAGCGACAGGCTGAAGAACGACACGCTTTCTTTTCGTCGGAAGTTGT
GGCTATGGCTTCGACGTCAAAAGCGTCGTCAACTTCCTCCTTCCCAGCAA
AAGCTGTGATTCCCGGCGTGCGTAATGCCACTGAGGGGCCCACCACGGTA
AACGTAGCATTTACCCCACGATTGTTTTCCACACCTATGCGAGAATCCAA
AAAGGAGGAAGAAGAATCCTGGGTCGATCGCCATAAACCAGAATGGCGCG
AGCACCACCAGGAGGGCCGAAATCAAATTGAACAGGCGGGCGAGCCCGAT
TCGTATGACATCCGAACCGTGAGCGAGAGGGACCCCATGTGGCTCAAGGC
TCGGGGAGACAAGAGCTACTCTATCGGTGACTTTGAATCAGCCAGAAACG
CCTATACTGCAGCCTTGCAAAGCCAAGTCCGATTTAGCTCACGCCATTTG
GTCCTCGGAAACCGTGCTTTGTCTTTTTTCCAAATTGGACAGTACCAGGA
GTGTGTCGAAGACTGCACCGAAGCTCTGGCGATCTTGCTCGTCGACGGGA
ACCATGACAACAGGGAGCACATCAGAAGCTTTCTACGCCTGCATGTTCGT
CGTGCTGCAGCCTTCTGTGAGCTAGGAGAATATACGAAGTCATTGAACGA
TTACAGGATGGCGCTCTACTATGCTCCAGGGGACAAAAGCTTGGAGAAGG
ATATCAGGATCCTGGAGAAGCGACTCGAACTGGCGAGCGATACAAATAGG
CGGATTGGCATTTGAATGCTTCACAGCATCGAAGATGAAACTGTCGAGGC
GCTCGCGAAAGGAGACGGGACTTTGGTGCTCAAAATACGCAAAGACGAGG
CTGACATCGCCAGTCGAGGCATCTGGCCCACCTTGACCATTCCTTGTGAA
ACGTGCGACACAAAAATGCTCCGAATGCGACGGGCTGAAGCAGTGGAGGA
ACGGCGGGCCAAGGAACAGCACCTCCGCGAGGTCGCCAAAGAAAAGAAGC
AGGACTTGGAACGGCTGGTCCTCCAGTCCCGCATAGACACTGAAATGGCG
CAACAAGCATGCCAAGGAAAGCGACAGGCTGAAGAACGACACGCTTTCTT
TTCGTCGGAAGTTGTGGCTATGGCTTCGACGTCAAAAGCGTCGTCAACTT
CCTCCTTCCCAGCAAAAGCTGTGATTCCCGGCGTGCGTAATGCCACTGAG
GGGCCCACCACGGTAAACGTAGCATTTACCCCACGATTGTTTTCCACACC
TATGCGAGAATCCAAAAAGGAGGAAGAAGAATCCTGGGTCGATCGCCATA
AACCAGAATGGCGCGAGCACCACCAGGAGGGCCGAAATCAAATTGAACAG
GCGGGCGAGCCCGATTCGTATGACATCCGAACCGTGAGCGAGAGGGACCC
CATGTGGCTCAAGGCTCGGGGAGACAAGAGCTACTCTATCGGTGACTTTG
AATCAGCCAGAAACGCCTATACTGCAGCCTTGCAAAGCCAAGTCCGATTT
AGCTCACGCCATTTGGTCCTCGGAAACCGTGCTTTGTCTTTTTTCCAAAT
TGGACAGTACCAGGAGTGTGTCGAAGACTGCACCGAAGCTCTGGCGATCT
TGCTCGTCGACGGGAACCATGACAACAGGGAGCACATCAGAAGCTTTCTA
CGCCTGCATGTTCGTCGTGCTGCAGCCTTCTGTGAGCTAGGAGAATATAC
GAAGTCATTGAACGATTACAGGATGGCGCTCTACTATGCTCCAGGGGACA
AAAGCTTGGAGAAGGATATCAGGATCCTGGAGAAGCGACTCGAACTGGCG
AGCGATACAAATAGGCGGATTGGCATTTGA
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Synonyms
Publications