jgi.p|Nanoce1779_2|581886, mRNA_3359 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581886
Unique NamemRNA_3359
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length962
Alignment locationscaffold_6:123348..124309 +

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Properties
Property NameValue
TranscriptId581972
TrackFilteredModels2
ProteinId581886
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:123348..124309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581886gene_3359Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581886mRNA_3359-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3359CDS_3359Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3359 ID=mRNA_3359|Name=jgi.p|Nanoce1779_2|581886|organism=Nannochloropsis oceanica|type=mRNA|length=962bp
ACAGAACAGGGAAGGCGAGACATCACGCATCACCATGCAAAAGAGGACAT
TGTCACTATCTTTTCTGGTTGGTGCCTTGTGCATTTTGCCTTCGCCAACC
CAGTCATCCCCTTTTCAAGACACTAAAACGACTCACCCGCATGGGTACCT
CCGCTCCGCCTCAGATGGCGCCCCTTCGTCGTCGTCCTTCTTGCGTGGCA
TGATGTACGACCCAGGCAATCCGGCCGCTCCCCAACCCCAGCCTATAAGC
ACTCTCGAAGAACAACGACATGGTGCCAAGATGCTCGACAATGGGGACCC
CGAAGAAGAGGAGGAACGTTTGGTTGAAGGCCGCAAGTCCGCTGTCTCTG
AAAAGATCGACCCCCTTGCAGCGACGCGCCACGCCGGCAAGATACTTGAT
AATGGGGAGCCTGCGGCACCTGAACCCCTGCCCTTGCTCCCGCAGCACCA
AGAGCAGGAATGGATGTTTGATACCGGTGAGGTGATTGCATCTAAACCTG
TGCCTCCGCAGTCCACGGCCCTGCCCATTAAACCTCCTGTGACGCTAGCT
GCCCTCCCTCCTCCGACCGATGTGGTGGACGTTGGCGACTCTCAGCGCAT
GTATGACAATGAAGAAATTACCGCCCCGCAGGTCCTGTCTCCGCCTCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCCGATGTTGGCAATTGTTCCTGAG
CCCTTGGCTACCACTCCCGCCCCCACGGCCACTCCTCAAGTCTTCCACGG
ATCAAAGATCATGGACGACAACGGAGGAACGAGCTGAACGTAGCTTTGCT
CAGGATACCAACCTTCTTCCTTTTATCTTTTCACCCGTACCCTAGTATGT
CGTAAGTACATGGCACCCTTCTCGGGGGCTTTGTGGTACATGCGGGCTGC
TGTTCGAAAGGGAAGTTGGCTTGTTTTCTTGGCCCGTGTGTGCAGCCCAG
TGCTCTGACAGG
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protein sequence of jgi.p|Nanoce1779_2|581886

>mRNA_3359-protein ID=mRNA_3359-protein|Name=jgi.p|Nanoce1779_2|581886|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MQKRTLSLSFLVGALCILPSPTQSSPFQDTKTTHPHGYLRSASDGAPSSS
SFLRGMMYDPGNPAAPQPQPISTLEEQRHGAKMLDNGDPEEEEERLVEGR
KSAVSEKIDPLAATRHAGKILDNGEPAAPEPLPLLPQHQEQEWMFDTGEV
IASKPVPPQSTALPIKPPVTLAALPPPTDVVDVGDSQRMYDNEEITAPQV
LSPPQQQQQQQQQQPMLAIVPEPLATTPAPTATPQVFHGSKIMDDNGGTS
*
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mRNA from alignment at scaffold_6:123348..124309+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3359 ID=mRNA_3359|Name=jgi.p|Nanoce1779_2|581886|organism=Nannochloropsis oceanica|type=mRNA|length=962bp|location=Sequence derived from alignment at scaffold_6:123348..124309+ (Nannochloropsis oceanica)
ACAGAACAGGGAAGGCGAGACATCACGCATCACCATGCAAAAGAGGACAT
TGTCACTATCTTTTCTGGTTGGTGCCTTGTGCATTTTGCCTTCGCCAACC
CAGTCATCCCCTTTTCAAGACACTAAAACGACTCACCCGCATGGGTACCT
CCGCTCCGCCTCAGATGGCGCCCCTTCGTCGTCGTCCTTCTTGCGTGGCA
TGATGTACGACCCAGGCAATCCGGCCGCTCCCCAACCCCAGCCTATAAGC
ACTCTCGAAGAACAACGACATGGTGCCAAGATGCTCGACAATGGGGACCC
CGAAGAAGAGGAGGAACGTTTGGTTGAAGGCCGCAAGTCCGCTGTCTCTG
AAAAGATCGACCCCCTTGCAGCGACGCGCCACGCCGGCAAGATACTTGAT
AATGGGGAGCCTGCGGCACCTGAACCCCTGCCCTTGCTCCCGCAGCACCA
AGAGCAGGAATGGATGTTTGATACCGGTGAGGTGATTGCATCTAAACCTG
TGCCTCCGCAGTCCACGGCCCTGCCCATTAAACCTCCTGTGACGCTAGCT
GCCCTCCCTCCTCCGACCGATGTGGTGGACGTTGGCGACTCTCAGCGCAT
GTATGACAATGAAGAAATTACCGCCCCGCAGGTCCTGTCTCCGCCTCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCCGATGTTGGCAATTGTTCCTGAG
CCCTTGGCTACCACTCCCGCCCCCACGGCCACTCCTCAAGTCTTCCACGG
ATCAAAGATCATGGACGACAACGGAGGAACGAGCTGAACGTAGCTTTGCT
CAGGATACCAACCTTCTTCCTTTTATCTTTTCACCCGTACCCTAGTATGT
CGTAAGTACATGGCACCCTTCTCGGGGGCTTTGTGGTACATGCGGGCTGC
TGTTCGAAAGGGAAGTTGGCTTGTTTTCTTGGCCCGTGTGTGCAGCCCAG
TGCTCTGACAGG
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Coding sequence (CDS) from alignment at scaffold_6:123348..124309+

>mRNA_3359 ID=mRNA_3359|Name=jgi.p|Nanoce1779_2|581886|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at scaffold_6:123348..124309+ (Nannochloropsis oceanica)
ATGCAAAAGAGGACATTGTCACTATCTTTTCTGGTTGGTGCCTTGTGCAT
TTTGCCTTCGCCAACCCAGTCATCCCCTTTTCAAGACACTAAAACGACTC
ACCCGCATGGGTACCTCCGCTCCGCCTCAGATGGCGCCCCTTCGTCGTCG
TCCTTCTTGCGTGGCATGATGTACGACCCAGGCAATCCGGCCGCTCCCCA
ACCCCAGCCTATAAGCACTCTCGAAGAACAACGACATGGTGCCAAGATGC
TCGACAATGGGGACCCCGAAGAAGAGGAGGAACGTTTGGTTGAAGGCCGC
AAGTCCGCTGTCTCTGAAAAGATCGACCCCCTTGCAGCGACGCGCCACGC
CGGCAAGATACTTGATAATGGGGAGCCTGCGGCACCTGAACCCCTGCCCT
TGCTCCCGCAGCACCAAGAGCAGGAATGGATGTTTGATACCGGTGAGGTG
ATTGCATCTAAACCTGTGCCTCCGCAGTCCACGGCCCTGCCCATTAAACC
TCCTGTGACGCTAGCTGCCCTCCCTCCTCCGACCGATGTGGTGGACGTTG
GCGACTCTCAGCGCATGTATGACAATGAAGAAATTACCGCCCCGCAGGTC
CTGTCTCCGCCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGATGTT
GGCAATTGTTCCTGAGCCCTTGGCTACCACTCCCGCCCCCACGGCCACTC
CTCAAGTCTTCCACGGATCAAAGATCATGGACGACAACGGAGGAACGAGC
TGA
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Synonyms
Publications