jgi.p|Nanoce1779_2|582518, mRNA_3540 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582518
Unique Name	mRNA_3540
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1363
Alignment location	scaffold_6:606934..608875 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582604
Track	FilteredModels2
ProteinId	582518

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:606934..608875 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582518	gene_3540	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582518	mRNA_3540-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3540	CDS_3540	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:606934..608875+
coding sequence from alignment at scaffold_6:606934..608875+

mRNA sequence

>mRNA_3540 ID=mRNA_3540|Name=jgi.p|Nanoce1779_2|582518|organism=Nannochloropsis oceanica|type=mRNA|length=1363bp
ACAGGACGGAGTGCCGAAGAGAGCAGCTGCGAGCATCATCTCACTCGCAA
AGCTTGCTCATTTCGACCTCACGCTTGGAAGGCATCAGCGCACAATTTAG
CGTTGCAATCGATAAGCTACAGCATCGTGTGCATCCTATTATCACTGCGA
GACCAATAACCAAAGCGCATGGGCAACGCGACGTCAGCGTCGGCCGCAGG
CGAGCATGCTCCCGCCCCGAAGGGCGATGGCCAAGACGATTGCGGCTATC
GTGTGCTGGGCGTGCAAGCCGGCTCTCCGGCTGCGTCGGCGGGCTTGGTG
TCGTTCTTTGACTTTATCGTTATGGCCAACAACTTTCCCTTGCGCCGGGT
AGACGATACCTTCATAGACTTAATCCGAGAATTCGAAGGCCGCCCACTCA
CCCTGCAGATCTACAACTCGAAGAGTCAAAGTTTGCGAGATGTAATTCTA
ACCCCAAGCAAGAAGTGGGACGGTCAAGGCATGCTAGGTGTCACGATCCG
ATTCGACTTTTACGATCAGTCTGAAGAGCACCTCGTACGAGTCCTGGAAG
TGGTTCCCAACTCTCCCGCGGAGCTAGCAGGCCTCCAGCCCATGACCGAC
TTCTTGCTGGGCACGGCCGAGACAGTGTTCAAGGACCCAGACGTGCTGGA
AGAAATTCTCGGCCTTAACCTGGAGCAAACCATCGATTTCTACGTCTACA
ACACCGAGACCGATACCGTTCGGACTGCCACCTTGATGCCTAATCTCAAA
TGGGGGGGGCGTGGATGTTTAGGGGCCGAGATTGGCCACGGGTACTTGCA
TGGATTGCCGCAGAAATGCTGTCGAAGTAATGGGACGTCGGTATTCAAGG
CCCCAGCTCCTCATATTGCGGATGCTACCCGCGCGATGATTATTGGGAAC
GGCGGGGGCGTGGGTGTGGGGGGATGGATGGAAAAAGAGGCTGGTCGGAG
AGCGGAGGAAGGGCAGGAGGTGAATGTGGTGGACGTGAATTTGCAGAAGG
AGCTACAGGAGCAGGAACAGGAGCGAGAGCTGGAGGCCGAGCAGGAACCA
CCACTACCTGCGGTAAGGCAAGAAGGGTAATCACTGCGAGCAATTACAAA
GGCGTATTTATGTTTTTGATATTTGAGTGAGAGAAATGGAAGGATCGACA
AGATGAAGATGCAAAAGACCGTACGCGTGAGCACACACTCAAGGGCCAAG
AGAAAAGAGCACCGTAACTGGCAAGAAAAAGAAGCAAGCCTTTCCCTTTG
TAACCGCCCGAGAAAGAGCACCGAGAGCCCCTAGACACGAGGATGAACAA
CCAAGAAGAAAAACAAGCACAAAAGCAAACGACCATTTCAAGCTTAGTAT
TAAATACCCTCAC

protein sequence of jgi.p|Nanoce1779_2|582518

>mRNA_3540-protein ID=mRNA_3540-protein|Name=jgi.p|Nanoce1779_2|582518|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MGNATSASAAGEHAPAPKGDGQDDCGYRVLGVQAGSPAASAGLVSFFDFI
VMANNFPLRRVDDTFIDLIREFEGRPLTLQIYNSKSQSLRDVILTPSKKW
DGQGMLGVTIRFDFYDQSEEHLVRVLEVVPNSPAELAGLQPMTDFLLGTA
ETVFKDPDVLEEILGLNLEQTIDFYVYNTETDTVRTATLMPNLKWGGRGC
LGAEIGHGYLHGLPQKCCRSNGTSVFKAPAPHIADATRAMIIGNGGGVGV
GGWMEKEAGRRAEEGQEVNVVDVNLQKELQEQEQERELEAEQEPPLPAVR
QEG*

mRNA from alignment at scaffold_6:606934..608875+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3540 ID=mRNA_3540|Name=jgi.p|Nanoce1779_2|582518|organism=Nannochloropsis oceanica|type=mRNA|length=1942bp|location=Sequence derived from alignment at scaffold_6:606934..608875+ (Nannochloropsis oceanica)
ACAGGACGGAGTGCCGAAGAGAGCAGCTGCGAGCATCATCTCACTCGCAA
AGCTTGCTCATTTCGACCTCACGCTTGGAAGGCATCAGCGCACAATTTAG
CGTTGCAATCGATAAGCTACAGCATCGTGTGCATCCTATTATCACTGCGA
GACCAATAACCAAAGCGCATGGGCAACGCGACGTCAGCGTCGGCCGCAGG
CGAGCATGCTCCCGCCCCGAAGGGCGATGGCCAAGACGATTGCGGCTATC
GTGTGCTGGGCGTGCAAGCCGGCTCTCCGGCTGCGTCGGCGGGCTTGGTG
TCGTTCTTTGACTTTATCGTTATGGCCAACAACTTTCCCTTGCGCGTAAG
TGGTGGGACAGTACGGAAAAGGGGCATGTTGAGGGCATGGTGTTGATAAA
GCTCGAGGAGGAGGGTTGTAGAAACTAGAGACTCCCCGCTCGGCTGACAT
ACATTCGTATATTTCCCCCATAATCCAAAATAACAGCGGGTAGACGATAC
CTTCATAGACTTAATCCGAGAATTCGAAGGCCGCCCACTCACCCTGCAGA
TCTACAACTCGAAGAGTCAAAGTTTGCGAGGTACGGAGAGCGAGCGAGCT
ATGAGCCTGAAGGGGTTATTGATTGAGAATATGCCACTTGATGACTATTG
CCTTCTTTTTACGATATAACAGATGTAATTCTAACCCCAAGCAAGAAGTG
GGACGGTCAAGGCATGCTAGGTATGTTCCCAAAAAAGCAAAGCCCATCCC
TCCTACTTCCCCCTCTCGTTGTCCCACTCATGTTCCTTCCCCAACATCCC
GCCCTTTTTTTTCATTTTATCAACAGGTGTCACGATCCGATTCGACTTTT
ACGATCAGTCTGAAGAGCACCTCGTACGAGTCCTGGAAGTGGTTCCCAAC
TCTCCCGCGGAGCTAGCAGGCCTCCAGCCCATGACCGACTTCTTGCTGGG
CACGGCCGAGACAGTGTTCAAGGGTAAGCAAGCCACCCATATTCTATATA
AATCTATTGTCTTTTAAGTGTTATGCGTTTTCAAGCCTCATGAATTATTG
TAGTTGCCATCCTAACACTTGATCTCTTCCTCCCACCTTCCCTCCTTCCC
CATTACAGACCCAGACGTGCTGGAAGAAATTCTCGGCCTTAACCTGGAGC
AAACCATCGATTTCTACGTCTACAACACCGAGACCGATACCGTTCGGACT
GCCACCTTGATGCCTAATCTCAAATGGGGGGGGCGTGGATGTTTAGGGGC
CGAGGTGAGTGTATGTGTGTGTGTTGGTGGATATCCCCTCCCTCTCTTGC
ACTTAACCCCCGCCTTCCCTATTCTAATTCTCATTTTATCGCGCCTCCCC
CTTCAAAAGATTGGCCACGGGTACTTGCATGGATTGCCGCAGAAATGCTG
TCGAAGTAATGGGACGTCGGTATTCAAGGCCCCAGCTCCTCATATTGCGG
ATGCTACCCGCGCGATGATTATTGGGAACGGCGGGGGCGTGGGTGTGGGG
GGATGGATGGAAAAAGAGGCTGGTCGGAGAGCGGAGGAAGGGCAGGAGGT
GAATGTGGTGGACGTGAATTTGCAGAAGGAGCTACAGGAGCAGGAACAGG
AGCGAGAGCTGGAGGCCGAGCAGGAACCACCACTACCTGCGGTAAGGCAA
GAAGGGTAATCACTGCGAGCAATTACAAAGGCGTATTTATGTTTTTGATA
TTTGAGTGAGAGAAATGGAAGGATCGACAAGATGAAGATGCAAAAGACCG
TACGCGTGAGCACACACTCAAGGGCCAAGAGAAAAGAGCACCGTAACTGG
CAAGAAAAAGAAGCAAGCCTTTCCCTTTGTAACCGCCCGAGAAAGAGCAC
CGAGAGCCCCTAGACACGAGGATGAACAACCAAGAAGAAAAACAAGCACA
AAAGCAAACGACCATTTCAAGCTTAGTATTAAATACCCTCAC

Coding sequence (CDS) from alignment at scaffold_6:606934..608875+

>mRNA_3540 ID=mRNA_3540|Name=jgi.p|Nanoce1779_2|582518|organism=Nannochloropsis oceanica|type=CDS|length=5472bp|location=Sequence derived from alignment at scaffold_6:606934..608875+ (Nannochloropsis oceanica)
ATGGGCAACGCGACGTCAGCGTCGGCCGCAGGCGAGCATGCTCCCGCCCC
GAAGGGCGATGGCCAAGACGATTGCGGCTATCGTGTGCTGGGCGTGCAAG
CCGGCTCTCCGGCTGCGTCGGCGGGCTTGGTGTCGTTCTTTGACTTTATC
GTTATGGCCAACAACTTTCCCTTGCGCCGGGTAGACGATACCTTCATAGA
CTTAATCCGAGAATTCGAAGGCCGCCCACTCACCCTGCAGATCTACAACT
CGAAGAGTCAAAGTTTGCGAGATGTAATTCTAACCCCAAGCAAGAAGTGG
GACGGTCAAGGCATGCTAGGTGTCACGATCCGATTCGACTTTTACGATCA
GTCTGAAGAGCACCTCGTACGAGTCCTGGAAGTGGTTCCCAACTCTCCCG
CGGAGCTAGCAGGCCTCCAGCCCATGACCGACTTCTTGCTGGGCACGGCC
GAGACAGTGTTCAAGGACCCAGACGTGCTGGAAGAAATTCTCGGCCTTAA
CCTGGAGCAAACCATCGATTTCTACGTCTACAACACCGAGACCGATACCG
TTCGGACTGCCACCTTGATGCCTAATCTCAAATGGGGGGGGCGTGGATGT
TTAGGGGCCGAGATTGGCCACGGGTACTTGCATGGATTGCCGCAGAAATG
CTGTCGAAGTAATGGGACGTCGGTATTCAAGGCCCCAGCTCCTCATATTG
CGGATGCTACCCGCGCGATGATTATTGGGAACGGCGGGGGCGTGGGTGTG
GGGGGATGGATGGAAAAAGAGGCTGGTCGGAGAGCGGAGGAAGGGCAGGA
GGTGAATGTGGTGGACGTGAATTTGCAGAAGGAGCTACAGGAGCAGGAAC
AGGAGCGAGAGCTGGAGGCCGAGCAGGAACCACCACTACCTGCGGTAAGG
CAAGAAGGGTAAATGGGCAACGCGACGTCAGCGTCGGCCGCAGGCGAGCA
TGCTCCCGCCCCGAAGGGCGATGGCCAAGACGATTGCGGCTATCGTGTGC
TGGGCGTGCAAGCCGGCTCTCCGGCTGCGTCGGCGGGCTTGGTGTCGTTC
TTTGACTTTATCGTTATGGCCAACAACTTTCCCTTGCGCCGGGTAGACGA
TACCTTCATAGACTTAATCCGAGAATTCGAAGGCCGCCCACTCACCCTGC
AGATCTACAACTCGAAGAGTCAAAGTTTGCGAGATGTAATTCTAACCCCA
AGCAAGAAGTGGGACGGTCAAGGCATGCTAGGTGTCACGATCCGATTCGA
CTTTTACGATCAGTCTGAAGAGCACCTCGTACGAGTCCTGGAAGTGGTTC
CCAACTCTCCCGCGGAGCTAGCAGGCCTCCAGCCCATGACCGACTTCTTG
CTGGGCACGGCCGAGACAGTGTTCAAGGACCCAGACGTGCTGGAAGAAAT
TCTCGGCCTTAACCTGGAGCAAACCATCGATTTCTACGTCTACAACACCG
AGACCGATACCGTTCGGACTGCCACCTTGATGCCTAATCTCAAATGGGGG
GGGCGTGGATGTTTAGGGGCCGAGATTGGCCACGGGTACTTGCATGGATT
GCCGCAGAAATGCTGTCGAAGTAATGGGACGTCGGTATTCAAGGCCCCAG
CTCCTCATATTGCGGATGCTACCCGCGCGATGATTATTGGGAACGGCGGG
GGCGTGGGTGTGGGGGGATGGATGGAAAAAGAGGCTGGTCGGAGAGCGGA
GGAAGGGCAGGAGGTGAATGTGGTGGACGTGAATTTGCAGAAGGAGCTAC
AGGAGCAGGAACAGGAGCGAGAGCTGGAGGCCGAGCAGGAACCACCACTA
CCTGCGGTAAGGCAAGAAGGGTAAATGGGCAACGCGACGTCAGCGTCGGC
CGCAGGCGAGCATGCTCCCGCCCCGAAGGGCGATGGCCAAGACGATTGCG
GCTATCGTGTGCTGGGCGTGCAAGCCGGCTCTCCGGCTGCGTCGGCGGGC
TTGGTGTCGTTCTTTGACTTTATCGTTATGGCCAACAACTTTCCCTTGCG
CCGGGTAGACGATACCTTCATAGACTTAATCCGAGAATTCGAAGGCCGCC
CACTCACCCTGCAGATCTACAACTCGAAGAGTCAAAGTTTGCGAGATGTA
ATTCTAACCCCAAGCAAGAAGTGGGACGGTCAAGGCATGCTAGGTGTCAC
GATCCGATTCGACTTTTACGATCAGTCTGAAGAGCACCTCGTACGAGTCC
TGGAAGTGGTTCCCAACTCTCCCGCGGAGCTAGCAGGCCTCCAGCCCATG
ACCGACTTCTTGCTGGGCACGGCCGAGACAGTGTTCAAGGACCCAGACGT
GCTGGAAGAAATTCTCGGCCTTAACCTGGAGCAAACCATCGATTTCTACG
TCTACAACACCGAGACCGATACCGTTCGGACTGCCACCTTGATGCCTAAT
CTCAAATGGGGGGGGCGTGGATGTTTAGGGGCCGAGATTGGCCACGGGTA
CTTGCATGGATTGCCGCAGAAATGCTGTCGAAGTAATGGGACGTCGGTAT
TCAAGGCCCCAGCTCCTCATATTGCGGATGCTACCCGCGCGATGATTATT
GGGAACGGCGGGGGCGTGGGTGTGGGGGGATGGATGGAAAAAGAGGCTGG
TCGGAGAGCGGAGGAAGGGCAGGAGGTGAATGTGGTGGACGTGAATTTGC
AGAAGGAGCTACAGGAGCAGGAACAGGAGCGAGAGCTGGAGGCCGAGCAG
GAACCACCACTACCTGCGGTAAGGCAAGAAGGGTAAATGGGCAACGCGAC
GTCAGCGTCGGCCGCAGGCGAGCATGCTCCCGCCCCGAAGGGCGATGGCC
AAGACGATTGCGGCTATCGTGTGCTGGGCGTGCAAGCCGGCTCTCCGGCT
GCGTCGGCGGGCTTGGTGTCGTTCTTTGACTTTATCGTTATGGCCAACAA
CTTTCCCTTGCGCCGGGTAGACGATACCTTCATAGACTTAATCCGAGAAT
TCGAAGGCCGCCCACTCACCCTGCAGATCTACAACTCGAAGAGTCAAAGT
TTGCGAGATGTAATTCTAACCCCAAGCAAGAAGTGGGACGGTCAAGGCAT
GCTAGGTGTCACGATCCGATTCGACTTTTACGATCAGTCTGAAGAGCACC
TCGTACGAGTCCTGGAAGTGGTTCCCAACTCTCCCGCGGAGCTAGCAGGC
CTCCAGCCCATGACCGACTTCTTGCTGGGCACGGCCGAGACAGTGTTCAA
GGACCCAGACGTGCTGGAAGAAATTCTCGGCCTTAACCTGGAGCAAACCA
TCGATTTCTACGTCTACAACACCGAGACCGATACCGTTCGGACTGCCACC
TTGATGCCTAATCTCAAATGGGGGGGGCGTGGATGTTTAGGGGCCGAGAT
TGGCCACGGGTACTTGCATGGATTGCCGCAGAAATGCTGTCGAAGTAATG
GGACGTCGGTATTCAAGGCCCCAGCTCCTCATATTGCGGATGCTACCCGC
GCGATGATTATTGGGAACGGCGGGGGCGTGGGTGTGGGGGGATGGATGGA
AAAAGAGGCTGGTCGGAGAGCGGAGGAAGGGCAGGAGGTGAATGTGGTGG
ACGTGAATTTGCAGAAGGAGCTACAGGAGCAGGAACAGGAGCGAGAGCTG
GAGGCCGAGCAGGAACCACCACTACCTGCGGTAAGGCAAGAAGGGTAAAT
GGGCAACGCGACGTCAGCGTCGGCCGCAGGCGAGCATGCTCCCGCCCCGA
AGGGCGATGGCCAAGACGATTGCGGCTATCGTGTGCTGGGCGTGCAAGCC
GGCTCTCCGGCTGCGTCGGCGGGCTTGGTGTCGTTCTTTGACTTTATCGT
TATGGCCAACAACTTTCCCTTGCGCCGGGTAGACGATACCTTCATAGACT
TAATCCGAGAATTCGAAGGCCGCCCACTCACCCTGCAGATCTACAACTCG
AAGAGTCAAAGTTTGCGAGATGTAATTCTAACCCCAAGCAAGAAGTGGGA
CGGTCAAGGCATGCTAGGTGTCACGATCCGATTCGACTTTTACGATCAGT
CTGAAGAGCACCTCGTACGAGTCCTGGAAGTGGTTCCCAACTCTCCCGCG
GAGCTAGCAGGCCTCCAGCCCATGACCGACTTCTTGCTGGGCACGGCCGA
GACAGTGTTCAAGGACCCAGACGTGCTGGAAGAAATTCTCGGCCTTAACC
TGGAGCAAACCATCGATTTCTACGTCTACAACACCGAGACCGATACCGTT
CGGACTGCCACCTTGATGCCTAATCTCAAATGGGGGGGGCGTGGATGTTT
AGGGGCCGAGATTGGCCACGGGTACTTGCATGGATTGCCGCAGAAATGCT
GTCGAAGTAATGGGACGTCGGTATTCAAGGCCCCAGCTCCTCATATTGCG
GATGCTACCCGCGCGATGATTATTGGGAACGGCGGGGGCGTGGGTGTGGG
GGGATGGATGGAAAAAGAGGCTGGTCGGAGAGCGGAGGAAGGGCAGGAGG
TGAATGTGGTGGACGTGAATTTGCAGAAGGAGCTACAGGAGCAGGAACAG
GAGCGAGAGCTGGAGGCCGAGCAGGAACCACCACTACCTGCGGTAAGGCA
AGAAGGGTAAATGGGCAACGCGACGTCAGCGTCGGCCGCAGGCGAGCATG
CTCCCGCCCCGAAGGGCGATGGCCAAGACGATTGCGGCTATCGTGTGCTG
GGCGTGCAAGCCGGCTCTCCGGCTGCGTCGGCGGGCTTGGTGTCGTTCTT
TGACTTTATCGTTATGGCCAACAACTTTCCCTTGCGCCGGGTAGACGATA
CCTTCATAGACTTAATCCGAGAATTCGAAGGCCGCCCACTCACCCTGCAG
ATCTACAACTCGAAGAGTCAAAGTTTGCGAGATGTAATTCTAACCCCAAG
CAAGAAGTGGGACGGTCAAGGCATGCTAGGTGTCACGATCCGATTCGACT
TTTACGATCAGTCTGAAGAGCACCTCGTACGAGTCCTGGAAGTGGTTCCC
AACTCTCCCGCGGAGCTAGCAGGCCTCCAGCCCATGACCGACTTCTTGCT
GGGCACGGCCGAGACAGTGTTCAAGGACCCAGACGTGCTGGAAGAAATTC
TCGGCCTTAACCTGGAGCAAACCATCGATTTCTACGTCTACAACACCGAG
ACCGATACCGTTCGGACTGCCACCTTGATGCCTAATCTCAAATGGGGGGG
GCGTGGATGTTTAGGGGCCGAGATTGGCCACGGGTACTTGCATGGATTGC
CGCAGAAATGCTGTCGAAGTAATGGGACGTCGGTATTCAAGGCCCCAGCT
CCTCATATTGCGGATGCTACCCGCGCGATGATTATTGGGAACGGCGGGGG
CGTGGGTGTGGGGGGATGGATGGAAAAAGAGGCTGGTCGGAGAGCGGAGG
AAGGGCAGGAGGTGAATGTGGTGGACGTGAATTTGCAGAAGGAGCTACAG
GAGCAGGAACAGGAGCGAGAGCTGGAGGCCGAGCAGGAACCACCACTACC
TGCGGTAAGGCAAGAAGGGTAA

Synonyms

Publications