jgi.p|Nanoce1779_2|582864, mRNA_3639 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582864
Unique NamemRNA_3639
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2004
Alignment locationscaffold_6:837503..839506 -

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Properties
Property NameValue
TranscriptId582950
TrackFilteredModels2
ProteinId582864
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:837503..839506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582864gene_3639Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582864mRNA_3639-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3639CDS_3639Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3639 ID=mRNA_3639|Name=jgi.p|Nanoce1779_2|582864|organism=Nannochloropsis oceanica|type=mRNA|length=2004bp
GGGGGGGGGGGGGGAGGGAATGGAGGAAGAGGGGGGTTCCACCATCCCAT
GTCTTCTCATCATCAGGCTTACCCCCAGCATCCGCACCACCAGCCTTCGC
ATACACATGTGAGAGGTCCAAGTGGATATTCAGACGTGGGTGTAAATGAG
ATCGCGTTGACAAGAGGACGAATAGGCGGAGGAGGTGGAGGAGGGTATCA
TCATTATCTTCATCGAGGGGGGGCAGGAGGAGAGATGCATGGTGGTATGC
ATCTAGGAGAAGGGGGAGGACAGCGATTGGTTGGTGTGAAGCGGGATGCA
TCCACCAGGTCGGACGATGGGGGGGACTCAGACAGGGAGGACGATAGGAA
GAGGAGATGGATGACAAAGGAGCAAGCACGGGCGTGCCAGCAGAAGTTCG
AGGAGTGGCATGGGAGTTTGAGAGGAAAGCAGGAAGAAGTGGCTCATTTT
TCGAAGGGCATTGGACTGTCGCCGTTGCAGGTGGAGAAGAGGTTCCACTA
CATTCGGAAGCATTATGATAAAGTCACCAAGCGACTGACGACGGACGAGA
CCAGCAGGGGACGTGGGTTTGACTTGCTTACCTCGGGGGGAGGAGGTACC
TTCGGATTGTGCACGGGCTCGACGCAGATCTCCCTTGTTTCGAGAATGAA
CGAGTGGGCGCAACACGAACTAGATTCGGATCGATTGATGAAGATGTTGA
TCCAATTAGGCGCTTCGTTGAGGTATCAAAACACAGACGAAGTCCTCGTG
CGACCCTCCCGACATCAAATCACCAAGCTCGAGGGTTGTAAGTTCTTCGA
CGCGGGTTTTCCCCCTCACTTGGTTGTGGAGCCAGTGTCAGCCTTGGCCT
CCTTGGACGTGATGCAAGAGCTGGATTTGGTTTGGCTGGGTCGGAGATCG
GGCTCGGAGCCGTTTGCTTTGTTTATGCTGGACAGCGGGCTGGCGAATTC
GGTGAGCAGTGTTACGAAATGGGTGGATGTCATGTTGAAGGGCCACCATT
TGCCCTGTTTCACCATCGTACCCAAGGGGAGGATGAAACCAGTCAAGGCC
CAGATTGGGGTGCCCTGGATGCAGGCGCTGTTGACATCGGTACCGGGCAT
GGGAACCACCCGCTTGATTTCGGAGGAAAATTTGGAATATATCCTGTCGT
CTGATCCGAAGCTGCTAGGTAATTTAGCAGCGCTTGACGCGTTAGAGCTC
TTGTATACCCTGTCTGAGTCTCTGGTGTTGCCTCAGCAACCCCCGGGACT
TGTGACAGTTGGACAGCAGCAGCAACAGCAACAGGAACAACAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCATGATAACTGCGAGCGTT
GGAGGGTCGATGATAAGCGGAGGGACAGTTGCAGCGTTTGGTGGCATGGG
GGAGCACCAGCAGCAGCAGCAGAATAGGGGTTCCGGGGGAGCTGGGGGCG
ATGGTGGCATCAACATGCACACATCTTTGTGAGCAAAGATGATGGCAGGG
AGGGTGGGAGGAAAAGAAAGAGTCCGTACACTCAGCAAATAGTTTTACAC
TTGCATTCATACTCTTGCATTCTTACTAATGGTGAGGCAAATTAGAAGGG
ATGTGGGCTTATCACAAGGGATGGATAGAGCGAGGGAGGTGCGTAACTCA
CCTTGAAGCGCAACGACACATAATAGCCTTGCAGAAGAAGACATTTAAGA
AAAATGAAGTGACGGGGATGACATGAAAGCAGGTGTAAAATGCCAGGACT
GTAGGAGCAGCATATGCCAGCAGCAATGAGCAGTGAACCAGCAGCAACAA
CAGAAAGAAATGTTTTAAAGAAAAATCCGCATGGCGGCTGGGGGAGGGAA
TTAAATCGAGAGACTCAGTCATGGCCAACGAAGTTGATGAGACCCATGAC
TGCAAGAACAGCGTCAGCGTCAGACCAATAATGCGTAATAGAGAGATGAT
GAGAGAGTCTCAGCGACGAAGAAGTGAAAGCATAAAAGTCCAACACAATC
CAAG
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protein sequence of jgi.p|Nanoce1779_2|582864

>mRNA_3639-protein ID=mRNA_3639-protein|Name=jgi.p|Nanoce1779_2|582864|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp
MSSHHQAYPQHPHHQPSHTHVRGPSGYSDVGVNEIALTRGRIGGGGGGGY
HHYLHRGGAGGEMHGGMHLGEGGGQRLVGVKRDASTRSDDGGDSDREDDR
KRRWMTKEQARACQQKFEEWHGSLRGKQEEVAHFSKGIGLSPLQVEKRFH
YIRKHYDKVTKRLTTDETSRGRGFDLLTSGGGGTFGLCTGSTQISLVSRM
NEWAQHELDSDRLMKMLIQLGASLRYQNTDEVLVRPSRHQITKLEGCKFF
DAGFPPHLVVEPVSALASLDVMQELDLVWLGRRSGSEPFALFMLDSGLAN
SVSSVTKWVDVMLKGHHLPCFTIVPKGRMKPVKAQIGVPWMQALLTSVPG
MGTTRLISEENLEYILSSDPKLLGNLAALDALELLYTLSESLVLPQQPPG
LVTVGQQQQQQQEQQQQQQQQQQQQQQPMITASVGGSMISGGTVAAFGGM
GEHQQQQQNRGSGGAGGDGGINMHTSL*
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mRNA from alignment at scaffold_6:837503..839506-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3639 ID=mRNA_3639|Name=jgi.p|Nanoce1779_2|582864|organism=Nannochloropsis oceanica|type=mRNA|length=2004bp|location=Sequence derived from alignment at scaffold_6:837503..839506- (Nannochloropsis oceanica)
GGGGGGGGGGGGGGAGGGAATGGAGGAAGAGGGGGGTTCCACCATCCCAT
GTCTTCTCATCATCAGGCTTACCCCCAGCATCCGCACCACCAGCCTTCGC
ATACACATGTGAGAGGTCCAAGTGGATATTCAGACGTGGGTGTAAATGAG
ATCGCGTTGACAAGAGGACGAATAGGCGGAGGAGGTGGAGGAGGGTATCA
TCATTATCTTCATCGAGGGGGGGCAGGAGGAGAGATGCATGGTGGTATGC
ATCTAGGAGAAGGGGGAGGACAGCGATTGGTTGGTGTGAAGCGGGATGCA
TCCACCAGGTCGGACGATGGGGGGGACTCAGACAGGGAGGACGATAGGAA
GAGGAGATGGATGACAAAGGAGCAAGCACGGGCGTGCCAGCAGAAGTTCG
AGGAGTGGCATGGGAGTTTGAGAGGAAAGCAGGAAGAAGTGGCTCATTTT
TCGAAGGGCATTGGACTGTCGCCGTTGCAGGTGGAGAAGAGGTTCCACTA
CATTCGGAAGCATTATGATAAAGTCACCAAGCGACTGACGACGGACGAGA
CCAGCAGGGGACGTGGGTTTGACTTGCTTACCTCGGGGGGAGGAGGTACC
TTCGGATTGTGCACGGGCTCGACGCAGATCTCCCTTGTTTCGAGAATGAA
CGAGTGGGCGCAACACGAACTAGATTCGGATCGATTGATGAAGATGTTGA
TCCAATTAGGCGCTTCGTTGAGGTATCAAAACACAGACGAAGTCCTCGTG
CGACCCTCCCGACATCAAATCACCAAGCTCGAGGGTTGTAAGTTCTTCGA
CGCGGGTTTTCCCCCTCACTTGGTTGTGGAGCCAGTGTCAGCCTTGGCCT
CCTTGGACGTGATGCAAGAGCTGGATTTGGTTTGGCTGGGTCGGAGATCG
GGCTCGGAGCCGTTTGCTTTGTTTATGCTGGACAGCGGGCTGGCGAATTC
GGTGAGCAGTGTTACGAAATGGGTGGATGTCATGTTGAAGGGCCACCATT
TGCCCTGTTTCACCATCGTACCCAAGGGGAGGATGAAACCAGTCAAGGCC
CAGATTGGGGTGCCCTGGATGCAGGCGCTGTTGACATCGGTACCGGGCAT
GGGAACCACCCGCTTGATTTCGGAGGAAAATTTGGAATATATCCTGTCGT
CTGATCCGAAGCTGCTAGGTAATTTAGCAGCGCTTGACGCGTTAGAGCTC
TTGTATACCCTGTCTGAGTCTCTGGTGTTGCCTCAGCAACCCCCGGGACT
TGTGACAGTTGGACAGCAGCAGCAACAGCAACAGGAACAACAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCATGATAACTGCGAGCGTT
GGAGGGTCGATGATAAGCGGAGGGACAGTTGCAGCGTTTGGTGGCATGGG
GGAGCACCAGCAGCAGCAGCAGAATAGGGGTTCCGGGGGAGCTGGGGGCG
ATGGTGGCATCAACATGCACACATCTTTGTGAGCAAAGATGATGGCAGGG
AGGGTGGGAGGAAAAGAAAGAGTCCGTACACTCAGCAAATAGTTTTACAC
TTGCATTCATACTCTTGCATTCTTACTAATGGTGAGGCAAATTAGAAGGG
ATGTGGGCTTATCACAAGGGATGGATAGAGCGAGGGAGGTGCGTAACTCA
CCTTGAAGCGCAACGACACATAATAGCCTTGCAGAAGAAGACATTTAAGA
AAAATGAAGTGACGGGGATGACATGAAAGCAGGTGTAAAATGCCAGGACT
GTAGGAGCAGCATATGCCAGCAGCAATGAGCAGTGAACCAGCAGCAACAA
CAGAAAGAAATGTTTTAAAGAAAAATCCGCATGGCGGCTGGGGGAGGGAA
TTAAATCGAGAGACTCAGTCATGGCCAACGAAGTTGATGAGACCCATGAC
TGCAAGAACAGCGTCAGCGTCAGACCAATAATGCGTAATAGAGAGATGAT
GAGAGAGTCTCAGCGACGAAGAAGTGAAAGCATAAAAGTCCAACACAATC
CAAG
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Coding sequence (CDS) from alignment at scaffold_6:837503..839506-

>mRNA_3639 ID=mRNA_3639|Name=jgi.p|Nanoce1779_2|582864|organism=Nannochloropsis oceanica|type=CDS|length=1434bp|location=Sequence derived from alignment at scaffold_6:837503..839506- (Nannochloropsis oceanica)
ATGTCTTCTCATCATCAGGCTTACCCCCAGCATCCGCACCACCAGCCTTC
GCATACACATGTGAGAGGTCCAAGTGGATATTCAGACGTGGGTGTAAATG
AGATCGCGTTGACAAGAGGACGAATAGGCGGAGGAGGTGGAGGAGGGTAT
CATCATTATCTTCATCGAGGGGGGGCAGGAGGAGAGATGCATGGTGGTAT
GCATCTAGGAGAAGGGGGAGGACAGCGATTGGTTGGTGTGAAGCGGGATG
CATCCACCAGGTCGGACGATGGGGGGGACTCAGACAGGGAGGACGATAGG
AAGAGGAGATGGATGACAAAGGAGCAAGCACGGGCGTGCCAGCAGAAGTT
CGAGGAGTGGCATGGGAGTTTGAGAGGAAAGCAGGAAGAAGTGGCTCATT
TTTCGAAGGGCATTGGACTGTCGCCGTTGCAGGTGGAGAAGAGGTTCCAC
TACATTCGGAAGCATTATGATAAAGTCACCAAGCGACTGACGACGGACGA
GACCAGCAGGGGACGTGGGTTTGACTTGCTTACCTCGGGGGGAGGAGGTA
CCTTCGGATTGTGCACGGGCTCGACGCAGATCTCCCTTGTTTCGAGAATG
AACGAGTGGGCGCAACACGAACTAGATTCGGATCGATTGATGAAGATGTT
GATCCAATTAGGCGCTTCGTTGAGGTATCAAAACACAGACGAAGTCCTCG
TGCGACCCTCCCGACATCAAATCACCAAGCTCGAGGGTTGTAAGTTCTTC
GACGCGGGTTTTCCCCCTCACTTGGTTGTGGAGCCAGTGTCAGCCTTGGC
CTCCTTGGACGTGATGCAAGAGCTGGATTTGGTTTGGCTGGGTCGGAGAT
CGGGCTCGGAGCCGTTTGCTTTGTTTATGCTGGACAGCGGGCTGGCGAAT
TCGGTGAGCAGTGTTACGAAATGGGTGGATGTCATGTTGAAGGGCCACCA
TTTGCCCTGTTTCACCATCGTACCCAAGGGGAGGATGAAACCAGTCAAGG
CCCAGATTGGGGTGCCCTGGATGCAGGCGCTGTTGACATCGGTACCGGGC
ATGGGAACCACCCGCTTGATTTCGGAGGAAAATTTGGAATATATCCTGTC
GTCTGATCCGAAGCTGCTAGGTAATTTAGCAGCGCTTGACGCGTTAGAGC
TCTTGTATACCCTGTCTGAGTCTCTGGTGTTGCCTCAGCAACCCCCGGGA
CTTGTGACAGTTGGACAGCAGCAGCAACAGCAACAGGAACAACAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCATGATAACTGCGAGCG
TTGGAGGGTCGATGATAAGCGGAGGGACAGTTGCAGCGTTTGGTGGCATG
GGGGAGCACCAGCAGCAGCAGCAGAATAGGGGTTCCGGGGGAGCTGGGGG
CGATGGTGGCATCAACATGCACACATCTTTGTGA
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Synonyms
Publications