jgi.p|Nanoce1779_2|611938, mRNA_10313 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611938
Unique NamemRNA_10313
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1344
Alignment locationscaffold_60:54286..55629 +

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Properties
Property NameValue
TranscriptId612024
TrackFilteredModels2
ProteinId611938
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:54286..55629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611938gene_10313Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611938mRNA_10313-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10313CDS_10313Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10313 ID=mRNA_10313|Name=jgi.p|Nanoce1779_2|611938|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp
ACGTAGGAAAATGAATGAAAGTACTGGAAGAGAGAGGAGGAAGATGATAA
AGAGAGGAAAGAGGAGAAAAAGGGGAGAAAGAAAGAAGAAAAGGTAGAAG
AAGGAGGAACTTATCGATTCGCCTGCAAATACAATCATCCGCGAACTGAA
GAAGGGAGTTTGGATAAAGACAGGATGTTCCTGGTAGCTGAAAGGAGTAT
ATGCAGTTCAACGATTTTTTTTTTCCTTTGGAATTTCCTTCTTACTCGAG
TTGGAGGATTTCCCTTTTTGGTTTTGGTCCTTGCTTTACCCTCAGATAGA
GGAGATCAAAAGGCTTTAATTAATTTAATAGTTCGGGTAGTTGATGTCGC
CTTTCTTCAAATTATTCAAATTACTCGCTCAAAGCGGAGGTGCTTACCGC
ATATGGGGAGGCCACGAGGCTACACAATCTTCTAGGTTGAGTAGGCTTGG
TCACTGCTCTTGAGCTTCTTTCTCTCCACACTCGCTCCATTTTTAACATA
TATTTATAATCGTTCTTTTTCGCGCGTTCCTTCTCGGCTTCCTTCCGTGC
GTAGGCAGTCCAAATCACAAATCTTTTTTTCTAGGATATTATCAAACAAG
TAAGGAAAGCACACGATTACAACTTATCTTAGCCTACCCTCCCTCGTCCA
GGCTTTCTCTCGCTCTATGAGGATCATTATCATTCCACTTCTCAGGGATT
CCCCCTTCAACCACCTTTTGTCCTTTTTGCACACATCCTCCGCCCCTCCC
CGTCATCCATTTCTCCTTCACCCCCTTAACCCTGCATCTTCAGGCCCAAC
AGCATGGATGCTGCCACTAAACGGTCGCACTTCATGTCCACATGGCACTG
GCGCTTCTTCAAAGGCAAACGAGCGTCGTCAATCTCTTGTTGACGCTTCT
TCTTTTCCTCCTTCTCTTCTTCCTTCTCCTCCTCTTCCCCGTCCTTCACC
TCTTCCTTTTCTTCTTCTTCATCCTCCTCTTCCTCTTCCCCCTCGTCTTC
CTCCTCATCTTCCTCTTGTATGTACTGCCGCCCGATATTACCGCTACTCG
TGCTTGAGCCTTTGTCCTCGTCCGAGCCTTCGGCAATTACAGGCCCGGGG
GCAGGAGGGAACTTGACAAGATTACCATCGGTGACGTTGCACATTTTGTT
GCTGCCACCGCTATTAATGCTGTTCTTCATGCTGCTACTGGTGCCTGTAG
TGTGGGCGCTGCTGAGGATATTAGCAACGGTAGAGAGCCTCCCGCTGCAG
CGTCTGCTGCTGCTACTGCTGCTGCAATTCTTCTTGTTGCTGTTGTTTCT
GCTGCTGCTGTTGCTGCTGCTGCTGCTGTTGTTATTGTTGTTGT
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protein sequence of jgi.p|Nanoce1779_2|611938

>mRNA_10313-protein ID=mRNA_10313-protein|Name=jgi.p|Nanoce1779_2|611938|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MRIIIIPLLRDSPFNHLLSFLHTSSAPPRHPFLLHPLNPASSGPTAWMLP
LNGRTSCPHGTGASSKANERRQSLVDASSFPPSLLPSPPLPRPSPLPFLL
LHPPLPLPPRLPPHLPLVCTAARYYRYSCLSLCPRPSLRQLQARGQEGT*
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mRNA from alignment at scaffold_60:54286..55629+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10313 ID=mRNA_10313|Name=jgi.p|Nanoce1779_2|611938|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp|location=Sequence derived from alignment at scaffold_60:54286..55629+ (Nannochloropsis oceanica)
ACGTAGGAAAATGAATGAAAGTACTGGAAGAGAGAGGAGGAAGATGATAA
AGAGAGGAAAGAGGAGAAAAAGGGGAGAAAGAAAGAAGAAAAGGTAGAAG
AAGGAGGAACTTATCGATTCGCCTGCAAATACAATCATCCGCGAACTGAA
GAAGGGAGTTTGGATAAAGACAGGATGTTCCTGGTAGCTGAAAGGAGTAT
ATGCAGTTCAACGATTTTTTTTTTCCTTTGGAATTTCCTTCTTACTCGAG
TTGGAGGATTTCCCTTTTTGGTTTTGGTCCTTGCTTTACCCTCAGATAGA
GGAGATCAAAAGGCTTTAATTAATTTAATAGTTCGGGTAGTTGATGTCGC
CTTTCTTCAAATTATTCAAATTACTCGCTCAAAGCGGAGGTGCTTACCGC
ATATGGGGAGGCCACGAGGCTACACAATCTTCTAGGTTGAGTAGGCTTGG
TCACTGCTCTTGAGCTTCTTTCTCTCCACACTCGCTCCATTTTTAACATA
TATTTATAATCGTTCTTTTTCGCGCGTTCCTTCTCGGCTTCCTTCCGTGC
GTAGGCAGTCCAAATCACAAATCTTTTTTTCTAGGATATTATCAAACAAG
TAAGGAAAGCACACGATTACAACTTATCTTAGCCTACCCTCCCTCGTCCA
GGCTTTCTCTCGCTCTATGAGGATCATTATCATTCCACTTCTCAGGGATT
CCCCCTTCAACCACCTTTTGTCCTTTTTGCACACATCCTCCGCCCCTCCC
CGTCATCCATTTCTCCTTCACCCCCTTAACCCTGCATCTTCAGGCCCAAC
AGCATGGATGCTGCCACTAAACGGTCGCACTTCATGTCCACATGGCACTG
GCGCTTCTTCAAAGGCAAACGAGCGTCGTCAATCTCTTGTTGACGCTTCT
TCTTTTCCTCCTTCTCTTCTTCCTTCTCCTCCTCTTCCCCGTCCTTCACC
TCTTCCTTTTCTTCTTCTTCATCCTCCTCTTCCTCTTCCCCCTCGTCTTC
CTCCTCATCTTCCTCTTGTATGTACTGCCGCCCGATATTACCGCTACTCG
TGCTTGAGCCTTTGTCCTCGTCCGAGCCTTCGGCAATTACAGGCCCGGGG
GCAGGAGGGAACTTGACAAGATTACCATCGGTGACGTTGCACATTTTGTT
GCTGCCACCGCTATTAATGCTGTTCTTCATGCTGCTACTGGTGCCTGTAG
TGTGGGCGCTGCTGAGGATATTAGCAACGGTAGAGAGCCTCCCGCTGCAG
CGTCTGCTGCTGCTACTGCTGCTGCAATTCTTCTTGTTGCTGTTGTTTCT
GCTGCTGCTGTTGCTGCTGCTGCTGCTGTTGTTATTGTTGTTGT
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Coding sequence (CDS) from alignment at scaffold_60:54286..55629+

>mRNA_10313 ID=mRNA_10313|Name=jgi.p|Nanoce1779_2|611938|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_60:54286..55629+ (Nannochloropsis oceanica)
ATGAGGATCATTATCATTCCACTTCTCAGGGATTCCCCCTTCAACCACCT
TTTGTCCTTTTTGCACACATCCTCCGCCCCTCCCCGTCATCCATTTCTCC
TTCACCCCCTTAACCCTGCATCTTCAGGCCCAACAGCATGGATGCTGCCA
CTAAACGGTCGCACTTCATGTCCACATGGCACTGGCGCTTCTTCAAAGGC
AAACGAGCGTCGTCAATCTCTTGTTGACGCTTCTTCTTTTCCTCCTTCTC
TTCTTCCTTCTCCTCCTCTTCCCCGTCCTTCACCTCTTCCTTTTCTTCTT
CTTCATCCTCCTCTTCCTCTTCCCCCTCGTCTTCCTCCTCATCTTCCTCT
TGTATGTACTGCCGCCCGATATTACCGCTACTCGTGCTTGAGCCTTTGTC
CTCGTCCGAGCCTTCGGCAATTACAGGCCCGGGGGCAGGAGGGAACTTGA
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Synonyms
Publications