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Properties
| Property Name | Value |
|---|
| TranscriptId | 383201 |
| Track | FilteredModels2 |
| ProteinId | 383115 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_65 | supercontig | scaffold_65:53522..56078 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_11135 ID=mRNA_11135|Name=jgi.p|Nanoce1779_2|383115|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp
GTCCCCACATCGCTTTTTTGGGGGGGCTCGGTTGAAGGCCGACTTGTGGT
AGCTCAAAATACATTTTTCCGTCCACTCCAACCAGCCGGATCCCACTGCA
GACTTGACCTACTTCCTCTTGTTCTTTCTTGAACATCGACACACAGGCCG
AAGAAATCTGTGTTCGTTCAGCCACATCCTGCAGGAGGTCTGCTTCCTCC
AGCGGTCCTGCTCCCCGTATTCGAGCTGCTGCGGCAAAGCCTGCTTCTCG
ACTCTCTTCTTCTGAGAGCGCCGCATACAATCACATCCAGTCTATGCCCC
TGTTCGCTCGTATAGCTCCTGTTTCGCCTCCTCTTCGCGCCTTCGCTTCT
ATTCAATTCGTCCGTCTCGTCGTCGTCCTTTGCTTCCTCCCTGACGCCCT
TGGCTTCCACTTCCTATCGTCGTCCCAATTCTCCTTCGGCACTTCCTCCA
CCTGCTCAGGCTTCATATTCTTCTCGTCGTCCTTCATGTCTTCATCATCA
TCGCCAATTTTCGCCATGTCTGCCACTCCAACTTCCTCGTCTTCCCCGCC
GACGACGACCCGCCCTCCTACCCCTCCTCCTCGACCATCCCAACCGCGAC
GTCCGCACAAACAAGTTGCCACAGCCATCGTCCGTGACCCCAAGACCGGC
CTCTTCCTCGCCTTGAAGCGTTCCGACAAGGTAGGCTCCTTTCAGCGGCA
TTGGCACTTCATTTCTGGAGGGATGGAAATGGACGATGACAACGATGTCC
TCAGGCGGGCTTACACAGAGCTCGAAGAAGAGGTTCAGTTGAAGAGAGAG
CATCTTTGTCTCGTTGCTCAAGGCCGCCCTCTGCTGGTGGCGATTGAGGG
GAGGCTCGGAAACGGGAAGATCCTCGTCCATCCCGTGCTCTTCGACCTGG
TCCAGGCGTTCCCGTCGTCCCTCGGCTTGTCGAGACAGCCCGACGGACGC
TGCGTGTGGAGGCGCGACGACAACGAGCCGCCGCCGCGGCAGCAGCAGCA
GCAGCAGGGGAAGGGAAAGGAGGAGGAAGAGGAGGAAGAGGAGGGGAAAG
AGAGAGGGAGTGGCCACCAGCAGTGGAGGAAGGGATGGAGGTACATTCCA
CGGATTCGTCTCTCAAGTAGCCGCCCTCCCCTCCCTCCCTCATTTCCCTC
CTTTCTTCTCTCCGTTTCAATATTCTCCAATCCCCCTCGCTCCCTCCCTC
CCTCCCTCCCTCCCTCAGGAGATTGTAACAGACAGGGTGCACGGTGCCAT
GACGTTAATGAGCTGGGCGGTGGCCGTCCTTGGGACATGGGCCAGGGAGG
GCGGGAGGGAAGGGGGGAGGGAGGAGGAGGAGTGGAAGGAGGAAGCGAAA
GATCTGGGGTGGGCCTTGACTAGGCTGAGGCCGTCCATGACGGCCATCGA
AAGCGGCATCGCCCACGTCCTTTCCTCCGCCCTCTCGCCCTCCCTCCCTC
CCTCCCTCCCTTCTTCCTTCCTA back to topprotein sequence of jgi.p|Nanoce1779_2|383115 >mRNA_11135-protein ID=mRNA_11135-protein|Name=jgi.p|Nanoce1779_2|383115|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MPLFARIAPVSPPLRAFASIQFVRLVVVLCFLPDALGFHFLSSSQFSFGT
SSTCSGFIFFSSSFMSSSSSPIFAMSATPTSSSSPPTTTRPPTPPPRPSQ
PRRPHKQVATAIVRDPKTGLFLALKRSDKVGSFQRHWHFISGGMEMDDDN
DVLRRAYTELEEEVQLKREHLCLVAQGRPLLVAIEGRLGNGKILVHPVLF
DLVQAFPSSLGLSRQPDGRCVWRRDDNEPPPRQQQQQQGKGKEEEEEEEE
GKERGSGHQQWRKGWRYIPRIRLSSSRPPLPPSFPSFLLSVSIFSNPPRS
LPPSLPPSGDCNRQGARCHDVNELGGGRPWDMGQGGREGRGEGGGGVEGG
SERSGVGLD* back to topmRNA from alignment at scaffold_65:53522..56078+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11135 ID=mRNA_11135|Name=jgi.p|Nanoce1779_2|383115|organism=Nannochloropsis oceanica|type=mRNA|length=2557bp|location=Sequence derived from alignment at scaffold_65:53522..56078+ (Nannochloropsis oceanica)
GTCCCCACATCGCTTTTTTGGGGGGGCTCGGTTGAAGGCCGACTTGTGGT
AGCTCAAAATACATTTTTCCGTCCACTCCAACCAGCCGGATCCCACTGCA
GACTTGACCTACTTCCTCTTGTTCTTTCTTGAACATCGACACACAGGCCG
AAGAAATCTGTGTTCGTTCAGCCACATCCTGCAGGAGGTCTGCTTCCTCC
AGCGGTCCTGCTCCCCGTATTCGAGCTGCTGCGGCAAAGCCTGCTTCTCG
ACTCTCTTCTTCTGAGAGCGCCGCATACAATCACATCCAGTCTATGCCCC
TGTTCGCTCGTATAGCTCCTGTTTCGCCTCCTCTTCGCGCCTTCGCTTCT
ATTCAATTCGTCCGTCTCGTCGTCGTCCTTTGCTTCCTCCCTGACGCCCT
TGGCTTCCACTTCCTATCGTCGTCCCAATTCTCCTTCGGCACTTCCTCCA
CCTGCTCAGGCTTCATATTCTTCTCGTCGTCCTTCATGTCTTCATCATCA
TCGCCAATTTTCGCCATGTCTGCCACTCCAACTTCCTCGTCTTCCCCGCC
GACGACGACCCGCCCTCCTACCCCTCCTCCTCGACCATCCCAACCGCGAC
GTCCGCACAAACAAGTTGCCACAGCCATCGTCCGTGACCCCAAGACCGGC
CTCTTCCTCGCCTTGAAGCGTTCCGACAGTAAGGAAGGGGAATGGGAGGG
AGGGAGGGAAAGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGG
TTCAAGAAGAAAGAATTGATTAGAGGAGGAATGGATCAATGTGTACGTGA
AATCAATCAACGCCCCCTCCAAACACCCCTCTCAACCTTTTCCCTTCCTC
CCTCACTTCCAGAGGTAGGCTCCTTTCAGCGGCATTGGCACTTCATTTCT
GGAGGGATGGAAATGGACGATGACAACGATGTCCTCAGGCGGGCTTACAC
GTACGTGGCTCTATCCCCTCCGTCCCTCCCTCCCTCCCCCCCTCTCTCCT
GCCTTCAGATGCACATGCACTTTGGGTCTTCCTGTCGTTGCTCTTCTCGC
TCCCCCTCTCCCTCCCTCCCTCCCTTCCTTCCTCCCTCCCTCTCTCGTGC
TCCCGTTGTCCAACCCTCGTTCTCGCCCTCCCTCCCTCCCTCCCTCCCCC
CCCCTCCATCAGAGAGCTCGAAGAAGAGGTTCAGTTGAAGAGAGAGCATC
TTTGTCTCGTTGCTCAAGGCCGCCCTCTGCTGGTGGCGATTGAGGGGAGG
TAGGGAAGGAAGGGAGGAGGGTGAGAAGGAGGAAGTGAGTGATTTCTCGC
ACACACACTCTGTGGAAGTTATGTAATGTGTTTCTCGTACACACCCTGCA
GGCTCGGAAACGGGAAGATCCTCGTCCATCCCGTGCTCTTCGACCTGGTC
CAGGTAGGGAGGGGAGGGAAGGGAGGGTGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGTGTTTG
ATGGGTAGCTACGCTTTCCCTTTTATGCAAATTCGCAAATGATTTCCTTC
ATTCCCCTTTTGCTCTCCCTCCCTCCCGCCCCGCCCCGCCCTCCCTCCCT
CTAGCCCTACCATGGGCCGCCCCTGGACGAGAGCGTGTTAAATTGGGAGA
ACGTCGACATTCGCTGGATGTCTCTCGAGGCCCTGAATGGTGCGCCCATC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCTCCCTTTCCTTTACCC
CCCCTTTCCAGCTTTTTGATCTCACTGCTGGCACTGCCGGACTTACCTTC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCTCCAGGCGTTCCCGTCGTC
CCTCGGCTTGTCGAGACAGCCCGACGGACGCTGCGTGTGGAGGCGCGACG
ACAACGAGCCGCCGCCGCGGCAGCAGCAGCAGCAGCAGGGGAAGGGAAAG
GAGGAGGAAGAGGAGGAAGAGGAGGGGAAAGAGAGAGGGAGTGGCCACCA
GCAGTGGAGGAAGGGATGGAGGTACATTCCACGGATTCGTCTCTCAAGTA
GCCGCCCTCCCCTCCCTCCCTCATTTCCCTCCTTTCTTCTCTCCGTTTCA
ATATTCTCCAATCCCCCTCGCTCCCTCCCTCCCTCCCTCCCTCCCTCAGG
AGATTGTAACAGACAGGGTGCACGGTGCCATGACGTTAATGAGCTGGGCG
GTGGCCGTCCTTGGGACATGGGCCAGGGAGGGCGGGAGGGAAGGGGGGAG
GGAGGAGGAGGAGTGGAAGGAGGAAGCGAAAGATCTGGGGTGGGCCTTGA
CTAGGCTGAGGCCGGTAAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGACG
GAATCAGGTTCGACGTGTTTCTTGACGGAAAATCCAAAAAATCTTGTGAT
GATTCCGTCCTTACCATCCTCCCTCCCTCCCTCCCTCCCTCCCGCCCTCC
CTCCCTCCTCCTTCCAGTCCATGACGGCCATCGAAAGCGGCATCGCCCAC
GTCCTTTCCTCCGCCCTCTCGCCCTCCCTCCCTCCCTCCCTCCCTTCTTC
CTTCCTA back to topCoding sequence (CDS) from alignment at scaffold_65:53522..56078+ >mRNA_11135 ID=mRNA_11135|Name=jgi.p|Nanoce1779_2|383115|organism=Nannochloropsis oceanica|type=CDS|length=5400bp|location=Sequence derived from alignment at scaffold_65:53522..56078+ (Nannochloropsis oceanica)
ATGCCCCTGTTCGCTCGTATAGCTCCTGTTTCGCCTCCTCTTCGCGCCTT
CGCTTCTATTCAATTCGTCCGTCTCGTCGTCGTCCTTTGCTTCCTCCCTG
ACGCCCTTGGCTTCCACTTCCTATCGTCGTCCCAATTCTCCTTCGGCACT
TCCTCCACCTGCTCAGGCTTCATATTCTTCTCGTCGTCCTTCATGTCTTC
ATCATCATCGCCAATTTTCGCCATGTCTGCCACTCCAACTTCCTCGTCTT
CCCCGCCGACGACGACCCGCCCTCCTACCCCTCCTCCTCGACCATCCCAA
CCGCGACGTCCGCACAAACAAGTTGCCACAGCCATCGTCCGTGACCCCAA
GACCGGCCTCTTCCTCGCCTTGAAGCGTTCCGACAAGGTAGGCTCCTTTC
AGCGGCATTGGCACTTCATTTCTGGAGGGATGGAAATGGACGATGACAAC
GATGTCCTCAGGCGGGCTTACACAGAGCTCGAAGAAGAGGTTCAGTTGAA
GAGAGAGCATCTTTGTCTCGTTGCTCAAGGCCGCCCTCTGCTGGTGGCGA
TTGAGGGGAGGCTCGGAAACGGGAAGATCCTCGTCCATCCCGTGCTCTTC
GACCTGGTCCAGGCGTTCCCGTCGTCCCTCGGCTTGTCGAGACAGCCCGA
CGGACGCTGCGTGTGGAGGCGCGACGACAACGAGCCGCCGCCGCGGCAGC
AGCAGCAGCAGCAGGGGAAGGGAAAGGAGGAGGAAGAGGAGGAAGAGGAG
GGGAAAGAGAGAGGGAGTGGCCACCAGCAGTGGAGGAAGGGATGGAGGTA
CATTCCACGGATTCGTCTCTCAAGTAGCCGCCCTCCCCTCCCTCCCTCAT
TTCCCTCCTTTCTTCTCTCCGTTTCAATATTCTCCAATCCCCCTCGCTCC
CTCCCTCCCTCCCTCCCTCCCTCAGGAGATTGTAACAGACAGGGTGCACG
GTGCCATGACGTTAATGAGCTGGGCGGTGGCCGTCCTTGGGACATGGGCC
AGGGAGGGCGGGAGGGAAGGGGGGAGGGAGGAGGAGGAGTGGAAGGAGGA
AGCGAAAGATCTGGGGTGGGCCTTGACTAGATGCCCCTGTTCGCTCGTAT
AGCTCCTGTTTCGCCTCCTCTTCGCGCCTTCGCTTCTATTCAATTCGTCC
GTCTCGTCGTCGTCCTTTGCTTCCTCCCTGACGCCCTTGGCTTCCACTTC
CTATCGTCGTCCCAATTCTCCTTCGGCACTTCCTCCACCTGCTCAGGCTT
CATATTCTTCTCGTCGTCCTTCATGTCTTCATCATCATCGCCAATTTTCG
CCATGTCTGCCACTCCAACTTCCTCGTCTTCCCCGCCGACGACGACCCGC
CCTCCTACCCCTCCTCCTCGACCATCCCAACCGCGACGTCCGCACAAACA
AGTTGCCACAGCCATCGTCCGTGACCCCAAGACCGGCCTCTTCCTCGCCT
TGAAGCGTTCCGACAAGGTAGGCTCCTTTCAGCGGCATTGGCACTTCATT
TCTGGAGGGATGGAAATGGACGATGACAACGATGTCCTCAGGCGGGCTTA
CACAGAGCTCGAAGAAGAGGTTCAGTTGAAGAGAGAGCATCTTTGTCTCG
TTGCTCAAGGCCGCCCTCTGCTGGTGGCGATTGAGGGGAGGCTCGGAAAC
GGGAAGATCCTCGTCCATCCCGTGCTCTTCGACCTGGTCCAGGCGTTCCC
GTCGTCCCTCGGCTTGTCGAGACAGCCCGACGGACGCTGCGTGTGGAGGC
GCGACGACAACGAGCCGCCGCCGCGGCAGCAGCAGCAGCAGCAGGGGAAG
GGAAAGGAGGAGGAAGAGGAGGAAGAGGAGGGGAAAGAGAGAGGGAGTGG
CCACCAGCAGTGGAGGAAGGGATGGAGGTACATTCCACGGATTCGTCTCT
CAAGTAGCCGCCCTCCCCTCCCTCCCTCATTTCCCTCCTTTCTTCTCTCC
GTTTCAATATTCTCCAATCCCCCTCGCTCCCTCCCTCCCTCCCTCCCTCC
CTCAGGAGATTGTAACAGACAGGGTGCACGGTGCCATGACGTTAATGAGC
TGGGCGGTGGCCGTCCTTGGGACATGGGCCAGGGAGGGCGGGAGGGAAGG
GGGGAGGGAGGAGGAGGAGTGGAAGGAGGAAGCGAAAGATCTGGGGTGGG
CCTTGACTAGATGCCCCTGTTCGCTCGTATAGCTCCTGTTTCGCCTCCTC
TTCGCGCCTTCGCTTCTATTCAATTCGTCCGTCTCGTCGTCGTCCTTTGC
TTCCTCCCTGACGCCCTTGGCTTCCACTTCCTATCGTCGTCCCAATTCTC
CTTCGGCACTTCCTCCACCTGCTCAGGCTTCATATTCTTCTCGTCGTCCT
TCATGTCTTCATCATCATCGCCAATTTTCGCCATGTCTGCCACTCCAACT
TCCTCGTCTTCCCCGCCGACGACGACCCGCCCTCCTACCCCTCCTCCTCG
ACCATCCCAACCGCGACGTCCGCACAAACAAGTTGCCACAGCCATCGTCC
GTGACCCCAAGACCGGCCTCTTCCTCGCCTTGAAGCGTTCCGACAAGGTA
GGCTCCTTTCAGCGGCATTGGCACTTCATTTCTGGAGGGATGGAAATGGA
CGATGACAACGATGTCCTCAGGCGGGCTTACACAGAGCTCGAAGAAGAGG
TTCAGTTGAAGAGAGAGCATCTTTGTCTCGTTGCTCAAGGCCGCCCTCTG
CTGGTGGCGATTGAGGGGAGGCTCGGAAACGGGAAGATCCTCGTCCATCC
CGTGCTCTTCGACCTGGTCCAGGCGTTCCCGTCGTCCCTCGGCTTGTCGA
GACAGCCCGACGGACGCTGCGTGTGGAGGCGCGACGACAACGAGCCGCCG
CCGCGGCAGCAGCAGCAGCAGCAGGGGAAGGGAAAGGAGGAGGAAGAGGA
GGAAGAGGAGGGGAAAGAGAGAGGGAGTGGCCACCAGCAGTGGAGGAAGG
GATGGAGGTACATTCCACGGATTCGTCTCTCAAGTAGCCGCCCTCCCCTC
CCTCCCTCATTTCCCTCCTTTCTTCTCTCCGTTTCAATATTCTCCAATCC
CCCTCGCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGAGATTGTAACAGAC
AGGGTGCACGGTGCCATGACGTTAATGAGCTGGGCGGTGGCCGTCCTTGG
GACATGGGCCAGGGAGGGCGGGAGGGAAGGGGGGAGGGAGGAGGAGGAGT
GGAAGGAGGAAGCGAAAGATCTGGGGTGGGCCTTGACTAGATGCCCCTGT
TCGCTCGTATAGCTCCTGTTTCGCCTCCTCTTCGCGCCTTCGCTTCTATT
CAATTCGTCCGTCTCGTCGTCGTCCTTTGCTTCCTCCCTGACGCCCTTGG
CTTCCACTTCCTATCGTCGTCCCAATTCTCCTTCGGCACTTCCTCCACCT
GCTCAGGCTTCATATTCTTCTCGTCGTCCTTCATGTCTTCATCATCATCG
CCAATTTTCGCCATGTCTGCCACTCCAACTTCCTCGTCTTCCCCGCCGAC
GACGACCCGCCCTCCTACCCCTCCTCCTCGACCATCCCAACCGCGACGTC
CGCACAAACAAGTTGCCACAGCCATCGTCCGTGACCCCAAGACCGGCCTC
TTCCTCGCCTTGAAGCGTTCCGACAAGGTAGGCTCCTTTCAGCGGCATTG
GCACTTCATTTCTGGAGGGATGGAAATGGACGATGACAACGATGTCCTCA
GGCGGGCTTACACAGAGCTCGAAGAAGAGGTTCAGTTGAAGAGAGAGCAT
CTTTGTCTCGTTGCTCAAGGCCGCCCTCTGCTGGTGGCGATTGAGGGGAG
GCTCGGAAACGGGAAGATCCTCGTCCATCCCGTGCTCTTCGACCTGGTCC
AGGCGTTCCCGTCGTCCCTCGGCTTGTCGAGACAGCCCGACGGACGCTGC
GTGTGGAGGCGCGACGACAACGAGCCGCCGCCGCGGCAGCAGCAGCAGCA
GCAGGGGAAGGGAAAGGAGGAGGAAGAGGAGGAAGAGGAGGGGAAAGAGA
GAGGGAGTGGCCACCAGCAGTGGAGGAAGGGATGGAGGTACATTCCACGG
ATTCGTCTCTCAAGTAGCCGCCCTCCCCTCCCTCCCTCATTTCCCTCCTT
TCTTCTCTCCGTTTCAATATTCTCCAATCCCCCTCGCTCCCTCCCTCCCT
CCCTCCCTCCCTCAGGAGATTGTAACAGACAGGGTGCACGGTGCCATGAC
GTTAATGAGCTGGGCGGTGGCCGTCCTTGGGACATGGGCCAGGGAGGGCG
GGAGGGAAGGGGGGAGGGAGGAGGAGGAGTGGAAGGAGGAAGCGAAAGAT
CTGGGGTGGGCCTTGACTAGATGCCCCTGTTCGCTCGTATAGCTCCTGTT
TCGCCTCCTCTTCGCGCCTTCGCTTCTATTCAATTCGTCCGTCTCGTCGT
CGTCCTTTGCTTCCTCCCTGACGCCCTTGGCTTCCACTTCCTATCGTCGT
CCCAATTCTCCTTCGGCACTTCCTCCACCTGCTCAGGCTTCATATTCTTC
TCGTCGTCCTTCATGTCTTCATCATCATCGCCAATTTTCGCCATGTCTGC
CACTCCAACTTCCTCGTCTTCCCCGCCGACGACGACCCGCCCTCCTACCC
CTCCTCCTCGACCATCCCAACCGCGACGTCCGCACAAACAAGTTGCCACA
GCCATCGTCCGTGACCCCAAGACCGGCCTCTTCCTCGCCTTGAAGCGTTC
CGACAAGGTAGGCTCCTTTCAGCGGCATTGGCACTTCATTTCTGGAGGGA
TGGAAATGGACGATGACAACGATGTCCTCAGGCGGGCTTACACAGAGCTC
GAAGAAGAGGTTCAGTTGAAGAGAGAGCATCTTTGTCTCGTTGCTCAAGG
CCGCCCTCTGCTGGTGGCGATTGAGGGGAGGCTCGGAAACGGGAAGATCC
TCGTCCATCCCGTGCTCTTCGACCTGGTCCAGGCGTTCCCGTCGTCCCTC
GGCTTGTCGAGACAGCCCGACGGACGCTGCGTGTGGAGGCGCGACGACAA
CGAGCCGCCGCCGCGGCAGCAGCAGCAGCAGCAGGGGAAGGGAAAGGAGG
AGGAAGAGGAGGAAGAGGAGGGGAAAGAGAGAGGGAGTGGCCACCAGCAG
TGGAGGAAGGGATGGAGGTACATTCCACGGATTCGTCTCTCAAGTAGCCG
CCCTCCCCTCCCTCCCTCATTTCCCTCCTTTCTTCTCTCCGTTTCAATAT
TCTCCAATCCCCCTCGCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGAGAT
TGTAACAGACAGGGTGCACGGTGCCATGACGTTAATGAGCTGGGCGGTGG
CCGTCCTTGGGACATGGGCCAGGGAGGGCGGGAGGGAAGGGGGGAGGGAG
GAGGAGGAGTGGAAGGAGGAAGCGAAAGATCTGGGGTGGGCCTTGACTAG back to top
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