jgi.p|Nanoce1779_2|584688, mRNA_3136 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584688
Unique Name	mRNA_3136
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2062
Alignment location	scaffold_7:740742..742803 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584774
Track	FilteredModels2
ProteinId	584688

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:740742..742803 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584688	gene_3136	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584688	mRNA_3136-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3136	CDS_3136	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:740742..742803+
coding sequence from alignment at scaffold_7:740742..742803+

mRNA sequence

>mRNA_3136 ID=mRNA_3136|Name=jgi.p|Nanoce1779_2|584688|organism=Nannochloropsis oceanica|type=mRNA|length=2062bp
CCCTCCCTTAGCTCTAGCCTCCCCTTGCTGTCCAGCAGGAGGTGTGTGGC
GGGCGCGCACCAGCCTTCCACACCTTGTTCATAGCACCTATTTCCCATCT
TGTCGCCTTCTTTTAATGAAACCCCCACGCGGAGTATATGGGAAGGTCGA
GGGACGGGATTTTGCCGCTGCCGCTGCCGCTGCTCGCGGTTCGCGTGATG
ACGACGAGTGTTTCCAGCGGGCGTTGGTGTTGGTACAGTAGTGCTGCTGC
TGGGGTTGGACTTTCGGGGAGCAGCAGCAGCGGCGTCAGCAGTAGCAGCC
GCGATGTTTTCATCATTGTCTCCCTGTGGCTGCTCTTGGTGTGATGAAGG
TGTTGCAGTTTGAGTAGGGGGGAGGTGATTACGGGGTGTCGATGATGGCG
GCCTCGGCATACCATCTGTATCTTCTCGTGTGAGAGGCTGCTGCTGCTGC
TCATCATCCTGCTCCGGCACCTGCGGCTCCGGTGAAGAGTCGGTGGCTGT
GGGAGAAGGCTCTCCTTCAGGGCTACGCTGCGATTCCATGTCCGGATGCT
CCTCGTGATGTTCTTCGTCCATTTCTCCGTGCTGCTGTTTTGGTAATTGG
GACGTGTCAAATACGTCTGCTTGCACGCATGGGCCTACGATCGGCTGCTC
CAAGGGTGAAGGCCGGAAATCTGGGGCATTTTCTTCTTGTTGCTGCGGCG
GCTGATGCTGGTGCAGCTGCTCGTGCTGATGCTGTTGCTCTCGTGAAGGC
ACTTCAGTGGCAGACACGGACGCCTCTACATCCTCCACCTGCTGCTGCTG
CCCATCCGATTCCTGCTCGGCCACACGGGCTGCGTCTCGTGCTTCCTCCT
CAACGACCGAGATGTCAGATTTGGACATCATCGTGGCGGGCACCACCTTT
TTCTCCACCCTCCCATTCCCTTCCCGCTCTTCCCCTTTATTCTCAATTTC
TTTTACTTGTACTGGTTCTGCTTCTTGACTCTTACTCTTAAACTTCCTTT
GGAGCGGCAGCTGCTGCTGCTGATGTTCCTCCTCCTTCTTCTCCCTCTCC
CCCTCCTCATTCTCCTGCTGCTGATTGATATTGGTAGAGGGAGCGGCAGT
GGTGACCACCTTGAGGTTTTGCCTTGACAAGGACTCCCATTTCGATCCTC
CCACTTTCTTCCGTATTGAAGCCCACGACCAAGACGTAGACGAGGGCGAG
GAAGAAGAAGCTATGCCGAAGGCAATGGCATGTATGCTGAGCACTACTAC
CAGCAGGGCGACCAGATACGGTCCTCGCAAGCGATGCGCATCATGGTCCT
CCTTGGTGGTGGCACCAATTGATGCTATCCCACATCCTTCTTTTCCTCCT
CCTCCTTCTACTCCTCCTCCTCCAGCAGTAGCATCACCATGGAAAGTATT
ATTTGACGGGACAGAGGCTGCCTTTCGCCGACTTCCTCCACCTCGTTTTG
TCGCGCTCCCGGGAGTCGCAATCCCGGGAGTCTTTCGTCTTGATCGGGTC
GGGGAGGGTGTTCTGGTGACTGCCGAGTCCCTTGCTAGGGCGGACTTGCG
AGGGGAGCGTCGCCGGGAAGGTGATTTAGATGGCGAGATTCCTTTAGCGC
TGGCCCCGCGCACCTTGGCCATGATTTATTTCTCCCTGTACCGCAGGTAT
TTATCGATGATCGTGATTTTCCAGTTCGGTGTGGCAGGCATGTCTGAGTG
AACATGGAACTTAAGGTTAGGGAAGGGAAGAAGAGCTTATCACATCCAAT
TAAACCAATGTATCACACGTAAGGTTAATTGTGCCTCCCTTTGCTAGGGC
CCTTGTTGTAAGGTAGGCTGTCGTCGTCGTGAGTGTGATATTAGAAATGG
TCCGCTTTGCTGCTTCGGCGAGGACAGAAACGGACTGCCAACCCGTACCC
GAGGTGCCCTGCTAGTAGTGAGATCTGTGTCTGTGCGTCCTTTAGCCCAT
TTTGCTCCCAAGAATCCTCGTCAAGCGCATCCTTAAATTGGTGACCTCTC
CCACCCGCCTGATCCCTCCACCACAGCATCCACTGTTACGGCCTGCCTGG
CCCAAGGAGCTG

protein sequence of jgi.p|Nanoce1779_2|584688

>mRNA_3136-protein ID=mRNA_3136-protein|Name=jgi.p|Nanoce1779_2|584688|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MPKAMACMLSTTTSRATRYGPRKRCASWSSLVVAPIDAIPHPSFPPPPST
PPPPAVASPWKVLFDGTEAAFRRLPPPRFVALPGVAIPGVFRLDRVGEGV
LVTAESLARADLRGERRREGDLDGEIPLALAPRTLAMIYFSLYRRYLSMI
VIFQFGVAGMSE*

mRNA from alignment at scaffold_7:740742..742803+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3136 ID=mRNA_3136|Name=jgi.p|Nanoce1779_2|584688|organism=Nannochloropsis oceanica|type=mRNA|length=2062bp|location=Sequence derived from alignment at scaffold_7:740742..742803+ (Nannochloropsis oceanica)
CCCTCCCTTAGCTCTAGCCTCCCCTTGCTGTCCAGCAGGAGGTGTGTGGC
GGGCGCGCACCAGCCTTCCACACCTTGTTCATAGCACCTATTTCCCATCT
TGTCGCCTTCTTTTAATGAAACCCCCACGCGGAGTATATGGGAAGGTCGA
GGGACGGGATTTTGCCGCTGCCGCTGCCGCTGCTCGCGGTTCGCGTGATG
ACGACGAGTGTTTCCAGCGGGCGTTGGTGTTGGTACAGTAGTGCTGCTGC
TGGGGTTGGACTTTCGGGGAGCAGCAGCAGCGGCGTCAGCAGTAGCAGCC
GCGATGTTTTCATCATTGTCTCCCTGTGGCTGCTCTTGGTGTGATGAAGG
TGTTGCAGTTTGAGTAGGGGGGAGGTGATTACGGGGTGTCGATGATGGCG
GCCTCGGCATACCATCTGTATCTTCTCGTGTGAGAGGCTGCTGCTGCTGC
TCATCATCCTGCTCCGGCACCTGCGGCTCCGGTGAAGAGTCGGTGGCTGT
GGGAGAAGGCTCTCCTTCAGGGCTACGCTGCGATTCCATGTCCGGATGCT
CCTCGTGATGTTCTTCGTCCATTTCTCCGTGCTGCTGTTTTGGTAATTGG
GACGTGTCAAATACGTCTGCTTGCACGCATGGGCCTACGATCGGCTGCTC
CAAGGGTGAAGGCCGGAAATCTGGGGCATTTTCTTCTTGTTGCTGCGGCG
GCTGATGCTGGTGCAGCTGCTCGTGCTGATGCTGTTGCTCTCGTGAAGGC
ACTTCAGTGGCAGACACGGACGCCTCTACATCCTCCACCTGCTGCTGCTG
CCCATCCGATTCCTGCTCGGCCACACGGGCTGCGTCTCGTGCTTCCTCCT
CAACGACCGAGATGTCAGATTTGGACATCATCGTGGCGGGCACCACCTTT
TTCTCCACCCTCCCATTCCCTTCCCGCTCTTCCCCTTTATTCTCAATTTC
TTTTACTTGTACTGGTTCTGCTTCTTGACTCTTACTCTTAAACTTCCTTT
GGAGCGGCAGCTGCTGCTGCTGATGTTCCTCCTCCTTCTTCTCCCTCTCC
CCCTCCTCATTCTCCTGCTGCTGATTGATATTGGTAGAGGGAGCGGCAGT
GGTGACCACCTTGAGGTTTTGCCTTGACAAGGACTCCCATTTCGATCCTC
CCACTTTCTTCCGTATTGAAGCCCACGACCAAGACGTAGACGAGGGCGAG
GAAGAAGAAGCTATGCCGAAGGCAATGGCATGTATGCTGAGCACTACTAC
CAGCAGGGCGACCAGATACGGTCCTCGCAAGCGATGCGCATCATGGTCCT
CCTTGGTGGTGGCACCAATTGATGCTATCCCACATCCTTCTTTTCCTCCT
CCTCCTTCTACTCCTCCTCCTCCAGCAGTAGCATCACCATGGAAAGTATT
ATTTGACGGGACAGAGGCTGCCTTTCGCCGACTTCCTCCACCTCGTTTTG
TCGCGCTCCCGGGAGTCGCAATCCCGGGAGTCTTTCGTCTTGATCGGGTC
GGGGAGGGTGTTCTGGTGACTGCCGAGTCCCTTGCTAGGGCGGACTTGCG
AGGGGAGCGTCGCCGGGAAGGTGATTTAGATGGCGAGATTCCTTTAGCGC
TGGCCCCGCGCACCTTGGCCATGATTTATTTCTCCCTGTACCGCAGGTAT
TTATCGATGATCGTGATTTTCCAGTTCGGTGTGGCAGGCATGTCTGAGTG
AACATGGAACTTAAGGTTAGGGAAGGGAAGAAGAGCTTATCACATCCAAT
TAAACCAATGTATCACACGTAAGGTTAATTGTGCCTCCCTTTGCTAGGGC
CCTTGTTGTAAGGTAGGCTGTCGTCGTCGTGAGTGTGATATTAGAAATGG
TCCGCTTTGCTGCTTCGGCGAGGACAGAAACGGACTGCCAACCCGTACCC
GAGGTGCCCTGCTAGTAGTGAGATCTGTGTCTGTGCGTCCTTTAGCCCAT
TTTGCTCCCAAGAATCCTCGTCAAGCGCATCCTTAAATTGGTGACCTCTC
CCACCCGCCTGATCCCTCCACCACAGCATCCACTGTTACGGCCTGCCTGG
CCCAAGGAGCTG

Coding sequence (CDS) from alignment at scaffold_7:740742..742803+

>mRNA_3136 ID=mRNA_3136|Name=jgi.p|Nanoce1779_2|584688|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at scaffold_7:740742..742803+ (Nannochloropsis oceanica)
ATGCCGAAGGCAATGGCATGTATGCTGAGCACTACTACCAGCAGGGCGAC
CAGATACGGTCCTCGCAAGCGATGCGCATCATGGTCCTCCTTGGTGGTGG
CACCAATTGATGCTATCCCACATCCTTCTTTTCCTCCTCCTCCTTCTACT
CCTCCTCCTCCAGCAGTAGCATCACCATGGAAAGTATTATTTGACGGGAC
AGAGGCTGCCTTTCGCCGACTTCCTCCACCTCGTTTTGTCGCGCTCCCGG
GAGTCGCAATCCCGGGAGTCTTTCGTCTTGATCGGGTCGGGGAGGGTGTT
CTGGTGACTGCCGAGTCCCTTGCTAGGGCGGACTTGCGAGGGGAGCGTCG
CCGGGAAGGTGATTTAGATGGCGAGATTCCTTTAGCGCTGGCCCCGCGCA
CCTTGGCCATGATTTATTTCTCCCTGTACCGCAGGTATTTATCGATGATC
GTGATTTTCCAGTTCGGTGTGGCAGGCATGTCTGAGTGA

Synonyms

Publications