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Properties
| Property Name | Value |
|---|
| TranscriptId | 675138 |
| Track | FilteredModels2 |
| ProteinId | 675052 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:140..3461 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10899 ID=mRNA_10899|Name=jgi.p|Nanoce1779_2|675052|organism=Nannochloropsis oceanica|type=mRNA|length=2910bp
ATGGCGGGGCACCTGCGTCATCTCTATCTTCCCGGTGGCTGCATCGGCCC
CGTCGGCCTCGCTGATATTCTCTCAGAGATCCATCAAGCCCCCACCTCAG
AGGCAGGGGGGGAGGGAGGGAGGGAGGAAGGGGGGGAGGGAGGACTGCCC
GCGATCACGCACCTGGCCCTGTCGGCTGCCACGTTAACGGGAGGGAAGAC
GACCATGGCAACGCTGGTCGATTTCGTGAGGAGGGGAGGAGGTGGCTCTC
TAGAATTTTTGGACCTGTCGTGGCTTGTGCTCGGGGAGGGAGTGGGGGAG
AGCCTGAGGGAGGCATTGGACGAGGGACGATGTGGAAAGCTTCGGGAGTT
GCGCTTAAGTGCCAACGCCCTCCCTCCCTTTACCGTCCTCTCCTTCCTCT
CCTCCCTCGTCCTGCGTCGCGTCTGCCCTTCCCTTGAAGTCCTCCTCCTC
GATTCCAATGCTCTGAAGCCTCGTGACGTGTACAGGGCAGTCGCCCTCCT
CCACCACGCACACACCCCCGGCCCTCGTATCCGCGTCTGCCTCCGGGGCA
TGGGCTTTGGTCCCCATGTTGTCCTCTCCGAACCCCCTCCCTCTCTCCCT
CCTTCCCTCCTTCCTTCTGCATCTATGTCCACGGGAACGTTGCCAGCAGT
GGCAGCGATGGAAGGGCTTGGGGATGAAGGAGAAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGGACGGGGGCGATGGAGACTTATACGCGGTTC
ATGGATGGAGTGCCCGCCAATTTGGTGATGTTGGAGGTGCAGTGAGGGGC
AGGGGATGAGGAGAGGATGGCAGGAGATGGGAGTTTAGGACATGTATATA
AAGAAAGTGAATTAGCAGCGTTGTCCTGCTTTTAACAACCAAGAGCCTGG
ATCATCTAATAAGATCCAGCGAGCAGAAGCAAGTAATCCTTTTTTGCTTT
TGCAACGCCGCCTACCCAAGAACCAGTCGCACGTCACGGTACGAACGACC
TTTTTTTAAATTCTTTCCTGGCTGGGCCTTAAGGAAAATGCGTCTTCCTA
GCGCGTTGTGCGGTGTGCCCTTCTTTAAGTTTGAAATCAGGCCGGTCGTT
GGCGCGGTCCGCTCCACCTTAGTGCCCACATCAACAACAATCAGACCATC
CTGACAAGCCACGGTCAAGCACAACTATTGAGTCTTACATCCAAGTCAAT
GTTCATGGCTTCCCCCTTTACGCAAGCGGCCGAGTGCATGGTGGTGCTGC
TGTTTGGGTGTTTTTGGCCCTAACCCTGGTATCGACCCTGATTTGCACCT
CAAATTTGTGTTCTGCCGCGGTCGGGCGTTCGTCAAGGCCAGAACCACCG
CCTCCAAGCCTTGAGGCGAGCATGCCACATCTATAAGCCCATTAGTACAT
GCATGAGCACATACTTACCACCCAGTATCTTTCCCATGCCCTTTTCACAA
ACAACAGGGTGTCCGACGCCGACAACAACAAAACTTTCCCGCGCACGTCT
TCCCGCCGCCGCCTCATGCCTAAGACCACCACCAAAAAGGCTGCCAAGCC
AGTGGCGACAGCGGCTGTAGAGGCGCCCAGAAAATCAGATCGTCCTCCTG
GGAGCAAGGCGCTGCGTCCGCCTGCGGAACCTGCCGGCCGCTTCACACGC
AGTAACACACTCCCTCTGTCTGCCCCTGCCGATGATGCCCCTGCTACCGC
CCCCGCTGCTGTTGCTTCTGCTGCCGGTGCTGTCGCTACCCCCGCTACAA
CCGCTGCGACCAGTGCGCCGGTCTCACGGGGCACCACCACACCTGAACGC
AGCAACAGCCGTCGTGGGAACAAGAAAGTAAACTCTGCCTCCCCTCAAGT
CAAGGCCTACCGTCGCGCCGACGACCAGCTCCGCATCGTAGTGGGCGTGC
TCGCAGCGACACAAGCATGGAAAGATGGGAAGGTCCGACAGCACAACCGA
CAGATGACGACGAAGGCCATCTTGTCCATGTACCGGAAGTTGTGCTCGGT
GGTGGAAGGGGGTTTCCATGCCTCTCTGGCAGAGCATGCCAGGCAGTTAA
AGGGAAAATTCCGAGTTTTAATCTCTGAATGCGATGCCTTGTCACTCGCA
GCGGTGTTGGAAGAGATCTGGGAGAAGGAGGTGGACGACAAGCAGTGCTT
GTGGGCCATGAGGAGGTTGGTGGAGAAGGAGGCGGAGTGGAGGGTGGCCA
GGCCGGACCTGAGCAGGCTGTCGGAGCCAGAGGGTGGGAGAGGGAGGGAG
GGAGGAAGGGAGGGCATGAAGGTGGTGACGGTGGATGCGAGTGATGAAGA
AGCGGAGGCGAAGGAGACGGGGTACAGCAAGGCCATGGAGCTGGCAAACA
TTTTATTTGAGGCGACGGAGGAGGAGGAAGAGGAGGGGGGGATGGAGGCC
TTGACGGCAGAACCCAAGAAACCTGATGACCTCGTGGAGCAGGTGGCGAT
CAAGATTCAGGCAGGAGAAGCCTCGCTCTGGGCCGGATCGGAATGCGATC
CCTTCGCGGCCTTGGACTCTTTGGGGAGCGTGGGGAAACTCATGCGGAAA
GTACTTATGTATGAACACGACTTGAAGGACAGTAAGAGGCTGCTCGTCCT
CATTCCCGCCCTCGAGGGGGCGAGGCCGCGGACGTTCACCCGGCACATGG
TCAAGGCCAAGGAGGTACAATCCATCGCCAGCGGCTTCACCCATGCCGGA
TGGGGGTGGGAACGCCGTGTCTCCCACCTGCTTGCTTACGCTGAGATTAA
GTTCCGCGCCCGCCAGCTGTCTGAGGAAGTGTTGAGGGAGAAGGTGGGGA
TGCTGATGGAGTGGGAGAGCAGGAGGGAGGAGGAGGAAGAAGAGGAGGAG
GAGGAGGGAGGTTCGGCGGGAAAGCTGACGGAAGAAGAGTGGAAGAAGGT
GAAGCGCGTG back to topprotein sequence of jgi.p|Nanoce1779_2|675052 >mRNA_10899-protein ID=mRNA_10899-protein|Name=jgi.p|Nanoce1779_2|675052|organism=Nannochloropsis oceanica|type=polypeptide|length=504bp
MHEHILTTQYLSHALFTNNRVSDADNNKTFPRTSSRRRLMPKTTTKKAAK
PVATAAVEAPRKSDRPPGSKALRPPAEPAGRFTRSNTLPLSAPADDAPAT
APAAVASAAGAVATPATTAATSAPVSRGTTTPERSNSRRGNKKVNSASPQ
VKAYRRADDQLRIVVGVLAATQAWKDGKVRQHNRQMTTKAILSMYRKLCS
VVEGGFHASLAEHARQLKGKFRVLISECDALSLAAVLEEIWEKEVDDKQC
LWAMRRLVEKEAEWRVARPDLSRLSEPEGGRGREGGREGMKVVTVDASDE
EAEAKETGYSKAMELANILFEATEEEEEEGGMEALTAEPKKPDDLVEQVA
IKIQAGEASLWAGSECDPFAALDSLGSVGKLMRKVLMYEHDLKDSKRLLV
LIPALEGARPRTFTRHMVKAKEVQSIASGFTHAGWGWERRVSHLLAYAEI
KFRARQLSEEVLREKVGMLMEWESRREEEEEEEEEEGGSAGKLTEEEWKK
VKRV back to topmRNA from alignment at scaffold_71:140..3461+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10899 ID=mRNA_10899|Name=jgi.p|Nanoce1779_2|675052|organism=Nannochloropsis oceanica|type=mRNA|length=3322bp|location=Sequence derived from alignment at scaffold_71:140..3461+ (Nannochloropsis oceanica)
ATGGCGGGGTGAGTCAGCTGGCCGCCGCTTTCCGTCAAAGCAAACATAGG
TAAGCAAGGAGGGAGAGGAGGGAAGGGGGGGAGGAGGGAAGGAGGGAAAG
TCATATCAAAACTAAATGTGGTTCTACCAATCTTCCCTCCCTCCTTCCCT
CCCTCCCTAGGCACCTGCGTCATCTCTATCTTCCCGGTGGCTGCATCGGC
CCCGTCGGCCTCGCTGATATTCTCTCAGAGATCCATCAAGCCCCCACCTC
AGAGGCAGGGGGGGAGGGAGGGAGGGAGGAAGGGGGGGAGGGAGGACTGC
CCGCGATCACGCACCTGGCCCTGTCGGCTGCCACGTTAACGGGAGGGAAG
ACGACCATGGCAACGCTGGTCGATTTCGTGAGGAGGGGAGGAGGTGGCTC
TCTAGAATTTTTGGACCTGTCGTGGCTTGTGCTCGGGGAGGGAGTGGGGG
AGAGCCTGAGGGAGGCATTGGACGAGGGACGATGTGGAAAGCTTCGGGAG
TTGCGCTTAAGGTGAGGAGGAGGGAAGGGAGGGAGGGAGAAAGGAAAGAG
GGGCATGGCCGATCGTAGCGAGAAAGAGCAGTGGCCAAGAACGCGGCACT
CATCACTCCCTTCCTCCCTCCCTTCCTCCCTCCCCCTTCCCTCTCCATTC
CACCCAGTGCCAACGCCCTCCCTCCCTTTACCGTCCTCTCCTTCCTCTCC
TCCCTCGTCCTGCGTCGCGTCTGCCCTTCCCTTGAAGTCCTCCTCCTCGA
TTCCAATGCTCTGAAGCCTCGTGACGTGTACAGGGCAGTCGCCCTCCTCC
ACCACGCACACACCCCCGGCCCTCGTATCCGCGTCTGCCTCCGGGGCATG
GGCTTTGGTCCCCATGTTGTCCTCTCCGAACCCCCTCCCTCTCTCCCTCC
TTCCCTCCTTCCTTCTGCATCTATGTCCACGGGAACGTTGCCAGCAGTGG
CAGCGATGGAAGGGCTTGGGGATGAAGGAGAAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGGACGGGGGCGATGGAGACTTATACGCGGTTCAT
GGATGGAGTGCCCGCCAATTTGGTGATGTTGGAGGTGCAGTGAGGGGCAG
GGGATGAGGAGAGGATGGCAGGAGATGGGAGTTTAGGACATGTATATAAA
GAAAGTGAATTAGCAGCGTTGTCCTGCTTTTAACAACCAAGAGCCTGGAT
CATCTAATAAGATCCAGCGAGCAGAAGCAAGTAATCCTTTTTTGCTTTTG
CAACGCCGCCTACCCAAGAACCAGTCGCACGTCACGGTACGAACGACCTT
TTTTTAAATTCTTTCCTGGCTGGGCCTTAAGGAAAATGCGTCTTCCTAGC
GCGTTGTGCGGTGTGCCCTTCTTTAAGTTTGAAATCAGGCCGGTCGTTGG
CGCGGTCCGCTCCACCTTAGTGCCCACATCAACAACAATCAGACCATCCT
GACAAGCCACGGTCAAGCACAACTATTGAGTCTTACATCCAAGTCAATGT
TCATGGCTTCCCCCTTTACGCAAGCGGCCGAGTGCATGGTGGTGCTGCTG
TTTGGGTGTTTTTGGCCCTAACCCTGGTATCGACCCTGATTTGCACCTCA
AATTTGTGTTCTGCCGCGGTCGGGCGTTCGTCAAGGCCAGAACCACCGCC
TCCAAGCCTTGAGGCGAGCATGCCACATCTATAAGCCCATTAGTACATGC
ATGAGCACATACTTACCACCCAGTATCTTTCCCATGCCCTTTTCACAAAC
AACAGGGTGTCCGACGCCGACAACAACAAAACTTTCCCGCGCACGTCTTC
CCGCCGCCGCCTCATGCCTAAGACCACCACCAAAAAGGCTGCCAAGCCAG
TGGCGACAGCGGCTGTAGAGGCGCCCAGAAAATCAGATCGTCCTCCTGGG
AGCAAGGCGCTGCGTCCGCCTGCGGAACCTGCCGGCCGCTTCACACGCAG
TAACACACTCCCTCTGTCTGCCCCTGCCGATGATGCCCCTGCTACCGCCC
CCGCTGCTGTTGCTTCTGCTGCCGGTGCTGTCGCTACCCCCGCTACAACC
GCTGCGACCAGTGCGCCGGTCTCACGGGGCACCACCACACCTGAACGCAG
CAACAGCCGTCGTGGGAACAAGAAAGTAAACTCTGCCTCCCCTCAAGTCA
AGGCCTACCGTCGCGCCGACGACCAGCTCCGCATCGTAGTGGGCGTGCTC
GCAGCGACACAAGCATGGAAAGATGGGAAGGTCCGACAGCACAACCGACA
GATGACGACGAAGGCCATCTTGTCCATGTACCGGAAGTTGTGCTCGGTGG
TGGAAGGGGGTTTCCATGCCTCTCTGGCAGAGCATGCCAGGCAGTTAAAG
GGAAAATTCCGAGTTTTAATCTCTGAATGCGATGCCTTGTCACTCGCAGC
GGTGTTGGAAGAGATCTGGGAGAAGGAGGTGGACGACAAGCAGTGCTTGT
GGGCCATGAGGAGGTTGGTGGAGAAGGAGGCGGAGTGGAGGGTGGCCAGG
CCGGACCTGAGCAGGCTGTCGGAGCCAGAGGGTGGGAGAGGGAGGGAGGG
AGGAAGGGAGGGCATGAAGGTGGTGACGGTGGATGCGAGTGATGAAGAAG
CGGAGGCGAAGGAGACGGGGTACAGCAAGGCCATGGAGCTGGCAAACATT
TTATTTGAGGCGACGGAGGAGGAGGAAGAGGAGGGGGGGATGGAGGCCTT
GACGGCAGAACCCAAGAAACCTGATGACCTCGTGGAGCAGGTGGCGATCA
AGATTCAGGCAGGAGAAGCCTCGCTCTGGGCCGGATCGGAATGCGATCCC
TTCGCGGCCTTGGACTCTTTGGGGAGCGTGGGGAAACTCATGCGGAAAGT
ACTTATGTATGAACACGACTTGAAGGACAGTAAGAGGCTGCTCGTCCTCA
TTCCCGCCCTCGAGGGGGCGAGGCCGCGGACGTTCACCCGGCACATGGTC
AAGGCCAAGGTAAGAGAAGGAAGGAGCGAAGGAGGCAGGGAAAGAAGGAA
GTCAACGACGCCCTCAAATGCACCATATCACTCCCTCCTTCCCTCCCTCC
CTCTGCCTTCACATTACCAATAGGAGGTACAATCCATCGCCAGCGGCTTC
ACCCATGCCGGATGGGGGTGGGAACGCCGTGTCTCCCACCTGCTTGCTTA
CGCTGAGATTAAGTTCCGCGCCCGCCAGCTGTCTGAGGAAGTGTTGAGGG
AGAAGGTGGGGATGCTGATGGAGTGGGAGAGCAGGAGGGAGGAGGAGGAA
GAAGAGGAGGAGGAGGAGGGAGGTTCGGCGGGAAAGCTGACGGAAGAAGA
GTGGAAGAAGGTGAAGCGCGTG back to topCoding sequence (CDS) from alignment at scaffold_71:140..3461+ >mRNA_10899 ID=mRNA_10899|Name=jgi.p|Nanoce1779_2|675052|organism=Nannochloropsis oceanica|type=CDS|length=3024bp|location=Sequence derived from alignment at scaffold_71:140..3461+ (Nannochloropsis oceanica)
ATGCATGAGCACATACTTACCACCCAGTATCTTTCCCATGCCCTTTTCAC
AAACAACAGGGTGTCCGACGCCGACAACAACAAAACTTTCCCGCGCACGT
CTTCCCGCCGCCGCCTCATGCCTAAGACCACCACCAAAAAGGCTGCCAAG
CCAGTGGCGACAGCGGCTGTAGAGGCGCCCAGAAAATCAGATCGTCCTCC
TGGGAGCAAGGCGCTGCGTCCGCCTGCGGAACCTGCCGGCCGCTTCACAC
GCAGTAACACACTCCCTCTGTCTGCCCCTGCCGATGATGCCCCTGCTACC
GCCCCCGCTGCTGTTGCTTCTGCTGCCGGTGCTGTCGCTACCCCCGCTAC
AACCGCTGCGACCAGTGCGCCGGTCTCACGGGGCACCACCACACCTGAAC
GCAGCAACAGCCGTCGTGGGAACAAGAAAGTAAACTCTGCCTCCCCTCAA
GTCAAGGCCTACCGTCGCGCCGACGACCAGCTCCGCATCGTAGTGGGCGT
GCTCGCAGCGACACAAGCATGGAAAGATGGGAAGGTCCGACAGCACAACC
GACAGATGACGACGAAGGCCATCTTGTCCATGTACCGGAAGTTGTGCTCG
GTGGTGGAAGGGGGTTTCCATGCCTCTCTGGCAGAGCATGCCAGGCAGTT
AAAGGGAAAATTCCGAGTTTTAATCTCTGAATGCGATGCCTTGTCACTCG
CAGCGGTGTTGGAAGAGATCTGGGAGAAGGAGGTGGACGACAAGCAGTGC
TTGTGGGCCATGAGGAGGTTGGTGGAGAAGGAGGCGGAGTGGAGGGTGGC
CAGGCCGGACCTGAGCAGGCTGTCGGAGCCAGAGGGTGGGAGAGGGAGGG
AGGGAGGAAGGGAGGGCATGAAGGTGGTGACGGTGGATGCGAGTGATGAA
GAAGCGGAGGCGAAGGAGACGGGGTACAGCAAGGCCATGGAGCTGGCAAA
CATTTTATTTGAGGCGACGGAGGAGGAGGAAGAGGAGGGGGGGATGGAGG
CCTTGACGGCAGAACCCAAGAAACCTGATGACCTCGTGGAGCAGGTGGCG
ATCAAGATTCAGGCAGGAGAAGCCTCGCTCTGGGCCGGATCGGAATGCGA
TCCCTTCGCGGCCTTGGACTCTTTGGGGAGCGTGGGGAAACTCATGCGGA
AAGTACTTATGTATGAACACGACTTGAAGGACAGTAAGAGGCTGCTCGTC
CTCATTCCCGCCCTCGAGGGGGCGAGGCCGCGGACGTTCACCCGGCACAT
GGTCAAGGCCAAGGAGGTACAATCCATCGCCAGCGGCTTCACCCATGCCG
GATGGGGGTGGGAACGCCGTGTCTCCCACCTGCTTGCTTACGCTGAGATT
AAGTTCCGCGCCCGCCAGCTGTCTGAGGAAGTGTTGAGGGAGAAGGTGGG
GATGCTGATGGAGTGGGAGAGCAGGAGGGAGGAGGAGGAAGAAGAGGAGG
AGGAGGAGGGAGGTTCGGCGGGAAAGCTGACGGAAGAAGAGTGGAAGAAG
GTGAAGCGCGTGATGCATGAGCACATACTTACCACCCAGTATCTTTCCCA
TGCCCTTTTCACAAACAACAGGGTGTCCGACGCCGACAACAACAAAACTT
TCCCGCGCACGTCTTCCCGCCGCCGCCTCATGCCTAAGACCACCACCAAA
AAGGCTGCCAAGCCAGTGGCGACAGCGGCTGTAGAGGCGCCCAGAAAATC
AGATCGTCCTCCTGGGAGCAAGGCGCTGCGTCCGCCTGCGGAACCTGCCG
GCCGCTTCACACGCAGTAACACACTCCCTCTGTCTGCCCCTGCCGATGAT
GCCCCTGCTACCGCCCCCGCTGCTGTTGCTTCTGCTGCCGGTGCTGTCGC
TACCCCCGCTACAACCGCTGCGACCAGTGCGCCGGTCTCACGGGGCACCA
CCACACCTGAACGCAGCAACAGCCGTCGTGGGAACAAGAAAGTAAACTCT
GCCTCCCCTCAAGTCAAGGCCTACCGTCGCGCCGACGACCAGCTCCGCAT
CGTAGTGGGCGTGCTCGCAGCGACACAAGCATGGAAAGATGGGAAGGTCC
GACAGCACAACCGACAGATGACGACGAAGGCCATCTTGTCCATGTACCGG
AAGTTGTGCTCGGTGGTGGAAGGGGGTTTCCATGCCTCTCTGGCAGAGCA
TGCCAGGCAGTTAAAGGGAAAATTCCGAGTTTTAATCTCTGAATGCGATG
CCTTGTCACTCGCAGCGGTGTTGGAAGAGATCTGGGAGAAGGAGGTGGAC
GACAAGCAGTGCTTGTGGGCCATGAGGAGGTTGGTGGAGAAGGAGGCGGA
GTGGAGGGTGGCCAGGCCGGACCTGAGCAGGCTGTCGGAGCCAGAGGGTG
GGAGAGGGAGGGAGGGAGGAAGGGAGGGCATGAAGGTGGTGACGGTGGAT
GCGAGTGATGAAGAAGCGGAGGCGAAGGAGACGGGGTACAGCAAGGCCAT
GGAGCTGGCAAACATTTTATTTGAGGCGACGGAGGAGGAGGAAGAGGAGG
GGGGGATGGAGGCCTTGACGGCAGAACCCAAGAAACCTGATGACCTCGTG
GAGCAGGTGGCGATCAAGATTCAGGCAGGAGAAGCCTCGCTCTGGGCCGG
ATCGGAATGCGATCCCTTCGCGGCCTTGGACTCTTTGGGGAGCGTGGGGA
AACTCATGCGGAAAGTACTTATGTATGAACACGACTTGAAGGACAGTAAG
AGGCTGCTCGTCCTCATTCCCGCCCTCGAGGGGGCGAGGCCGCGGACGTT
CACCCGGCACATGGTCAAGGCCAAGGAGGTACAATCCATCGCCAGCGGCT
TCACCCATGCCGGATGGGGGTGGGAACGCCGTGTCTCCCACCTGCTTGCT
TACGCTGAGATTAAGTTCCGCGCCCGCCAGCTGTCTGAGGAAGTGTTGAG
GGAGAAGGTGGGGATGCTGATGGAGTGGGAGAGCAGGAGGGAGGAGGAGG
AAGAAGAGGAGGAGGAGGAGGGAGGTTCGGCGGGAAAGCTGACGGAAGAA
GAGTGGAAGAAGGTGAAGCGCGTG back to top
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