jgi.p|Nanoce1779_2|527247, mRNA_3802 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|527247
Unique NamemRNA_3802
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length648
Alignment locationscaffold_8:35918..37251 -

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Properties
Property NameValue
TranscriptId527333
TrackFilteredModels2
ProteinId527247
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:35918..37251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527247gene_3802Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527247mRNA_3802-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3802CDS_3802Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3802 ID=mRNA_3802|Name=jgi.p|Nanoce1779_2|527247|organism=Nannochloropsis oceanica|type=mRNA|length=648bp
ATGAGTGCAATAGAAAAGCTGTCGGAAGGGCGGCATGCTCGGCGACGCAT
CTTTGGTCCTTTGGGTGGCCCGCCCGCGGCTTCGACACCCCTTGTCGTGA
CGGGCCTCTTTCAAGGCTACCTTGCCTACAATATGGCCCGAAAGGCACTC
GCTGTGGCCGCACCAGGCTTACAAGGCGACGAGGGCCTTTCTAAGACTGA
CCTTGGTGTGGTCTCATCCTCCTTCACCGTCACGTATGGGGCATCTAAAT
TTGCAGGCAGCGTGATCACAGATCACGTCTCTTGCCGCGCCCTCTTCTCG
CTGGGGCTGGTGCTCACGGGCGTGCTGTGCCTTATTTTTTCCCTGTCGTC
GGAACTGCCCCGCCTGTGCCTCTTGTGGTCGCTGCACGGGGTGGTGCAGG
GCGCGGGCTGGCCGTCGCTGGCAAAGATTTGCGTGGAGAGAGTCGCCCCC
CGGGCACAGGGGAGAGTGTGGGCCTTGCTCTCAGCGGCTGGGAATGCTGG
TAGGGAGGGAGAAAAGGAGGGAGGGAGGACGAGAGGGAGGGGAGCGAGGA
AGGAGGGAGCGAGGGAGCGAGGACGGAAGAGTGTGAGAGAGGGAAGGATG
CTTGTTTTGAGGGGCTGCAACAGCTCCGATTTGGTCGCGCGAATCTAA
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protein sequence of jgi.p|Nanoce1779_2|527247

>mRNA_3802-protein ID=mRNA_3802-protein|Name=jgi.p|Nanoce1779_2|527247|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MSAIEKLSEGRHARRRIFGPLGGPPAASTPLVVTGLFQGYLAYNMARKAL
AVAAPGLQGDEGLSKTDLGVVSSSFTVTYGASKFAGSVITDHVSCRALFS
LGLVLTGVLCLIFSLSSELPRLCLLWSLHGVVQGAGWPSLAKICVERVAP
RAQGRVWALLSAAGNAGREGEKEGGRTRGRGARKEGARERGRKSVREGRM
LVLRGCNSSDLVARI*
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mRNA from alignment at scaffold_8:35918..37251-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3802 ID=mRNA_3802|Name=jgi.p|Nanoce1779_2|527247|organism=Nannochloropsis oceanica|type=mRNA|length=1334bp|location=Sequence derived from alignment at scaffold_8:35918..37251- (Nannochloropsis oceanica)
ATGAGTGCAATAGAAAAGCTGTCGGAAGGGCGGCATGCTCGGCGACGCAT
CTTTGGTCCTTTGGGTGGCCCGCCCGCGGCTTCGACACCCCTTGTCGTGA
CGGGTAAGGAAGGGACTAGTGAAGATAACGGAGGTGGATAGGGGGACAGC
CGTGTGTGGGAGAGAGCGCCAAGGCGGGCACAGAAAATGTGCCCCGAGTC
AACGGCCTTGATCATTGTCCACGCAAACCTTGCCTCTCCTGTCATGGACC
CACTCATTTCCCTTGTTCCCTCCCTTCCCCCCCTCCCTCCCCAGGCCTCT
TTCAAGGCTACCTTGCCTACAATATGGCCCGAAAGGCACTCGCTGTGGCC
GCACCAGGTACACTAACGGGAGAAGTGGATAGAAAAAGGGGAGGGGAAGC
AGGAGGGATTTAGGGTTTGCTCCGTTTTTGTCGCTCGTCTGGTTTGTGCA
TTTGTTGTTACCCCGACTAATTCCTCCCTCTCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTTGCCTCCTTCTTCCTTCGCAGGCTTACAAGGCGACGAGG
GCCTTTCTAAGACTGACCTTGGTGTGGTCTCATCCTCCTTCACCGTCACG
TATGGGGCATCTAAATTTGCAGGCAGCGTGATCACAGGTAGGCAGAAAAT
GAGGGAGGGAGGGAAGGAGGGAGGGGTGGAGGGAGGGGCGGAGGGAGGGA
GGGAGAGACGAGGGGTCCATTCACGTCCCACCATCTCATCCTTTTCACTG
TTTGAAATCTTTCTCTTCAACTCAGATCACGTCTCTTGCCGCGCCCTCTT
CTCGCTGGGGCTGGTGCTCACGGGCGTGCTGTGCCTTATTTTTTCCCTGT
CGTCGGAACTGCCCCGCCTGTGCCTCTTGTGGTCGCTGCACGGGGTGGTG
CAGGTGGGGGGGGGAGGAGAAAGCGGTGAAAAAGAGCAAGAAGGAGAGCA
CAAGGGTGTTTCTCGGTCTCTTCCAAACTCAGATATGACGTAATTCTCTT
TTCTTTCTCTTCTCGGGGATTCCTCATCTGACATTCCTCCTTCCCCTCCC
CCCCTCACTCCCTTCCTTCCTCCTTCTCTCTATAGGGCGCGGGCTGGCCG
TCGCTGGCAAAGATTTGCGTGGAGAGAGTCGCCCCCCGGGCACAGGGGAG
AGTGTGGGCCTTGCTCTCAGCGGCTGGGAATGCTGGTAGGGAGGGAGAAA
AGGAGGGAGGGAGGACGAGAGGGAGGGGAGCGAGGAAGGAGGGAGCGAGG
GAGCGAGGACGGAAGAGTGTGAGAGAGGGAAGGATGCTTGTTTTGAGGGG
CTGCAACAGCTCCGATTTGGTCGCGCGAATCTAA
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Coding sequence (CDS) from alignment at scaffold_8:35918..37251-

>mRNA_3802 ID=mRNA_3802|Name=jgi.p|Nanoce1779_2|527247|organism=Nannochloropsis oceanica|type=CDS|length=3240bp|location=Sequence derived from alignment at scaffold_8:35918..37251- (Nannochloropsis oceanica)
GGCGCGGGCTGGCCGTCGCTGGCAAAGATTTGCGTGGAGAGAGTCGCCCC
CCGGGCACAGGGGAGAGTGTGGGCCTTGCTCTCAGCGGCTGGGAATGCTG
GTAGGGAGGGAGAAAAGGAGGGAGGGAGGACGAGAGGGAGGGGAGCGAGG
AAGGAGGGAGCGAGGGAGCGAGGACGGAAGAGTGTGAGAGAGGGAAGGAT
GCTTGTTTTGAGGGGCTGCAACAGCTCCGATTTGGTCGCGCGAATCTAAA
TCACGTCTCTTGCCGCGCCCTCTTCTCGCTGGGGCTGGTGCTCACGGGCG
TGCTGTGCCTTATTTTTTCCCTGTCGTCGGAACTGCCCCGCCTGTGCCTC
TTGTGGTCGCTGCACGGGGTGGTGCAGGCTTACAAGGCGACGAGGGCCTT
TCTAAGACTGACCTTGGTGTGGTCTCATCCTCCTTCACCGTCACGTATGG
GGCATCTAAATTTGCAGGCAGCGTGATCACAGGCCTCTTTCAAGGCTACC
TTGCCTACAATATGGCCCGAAAGGCACTCGCTGTGGCCGCACCAGATGAG
TGCAATAGAAAAGCTGTCGGAAGGGCGGCATGCTCGGCGACGCATCTTTG
GTCCTTTGGGTGGCCCGCCCGCGGCTTCGACACCCCTTGTCGTGACGGGG
CGCGGGCTGGCCGTCGCTGGCAAAGATTTGCGTGGAGAGAGTCGCCCCCC
GGGCACAGGGGAGAGTGTGGGCCTTGCTCTCAGCGGCTGGGAATGCTGGT
AGGGAGGGAGAAAAGGAGGGAGGGAGGACGAGAGGGAGGGGAGCGAGGAA
GGAGGGAGCGAGGGAGCGAGGACGGAAGAGTGTGAGAGAGGGAAGGATGC
TTGTTTTGAGGGGCTGCAACAGCTCCGATTTGGTCGCGCGAATCTAAATC
ACGTCTCTTGCCGCGCCCTCTTCTCGCTGGGGCTGGTGCTCACGGGCGTG
CTGTGCCTTATTTTTTCCCTGTCGTCGGAACTGCCCCGCCTGTGCCTCTT
GTGGTCGCTGCACGGGGTGGTGCAGGCTTACAAGGCGACGAGGGCCTTTC
TAAGACTGACCTTGGTGTGGTCTCATCCTCCTTCACCGTCACGTATGGGG
CATCTAAATTTGCAGGCAGCGTGATCACAGGCCTCTTTCAAGGCTACCTT
GCCTACAATATGGCCCGAAAGGCACTCGCTGTGGCCGCACCAGATGAGTG
CAATAGAAAAGCTGTCGGAAGGGCGGCATGCTCGGCGACGCATCTTTGGT
CCTTTGGGTGGCCCGCCCGCGGCTTCGACACCCCTTGTCGTGACGGGGCG
CGGGCTGGCCGTCGCTGGCAAAGATTTGCGTGGAGAGAGTCGCCCCCCGG
GCACAGGGGAGAGTGTGGGCCTTGCTCTCAGCGGCTGGGAATGCTGGTAG
GGAGGGAGAAAAGGAGGGAGGGAGGACGAGAGGGAGGGGAGCGAGGAAGG
AGGGAGCGAGGGAGCGAGGACGGAAGAGTGTGAGAGAGGGAAGGATGCTT
GTTTTGAGGGGCTGCAACAGCTCCGATTTGGTCGCGCGAATCTAAATCAC
GTCTCTTGCCGCGCCCTCTTCTCGCTGGGGCTGGTGCTCACGGGCGTGCT
GTGCCTTATTTTTTCCCTGTCGTCGGAACTGCCCCGCCTGTGCCTCTTGT
GGTCGCTGCACGGGGTGGTGCAGGCTTACAAGGCGACGAGGGCCTTTCTA
AGACTGACCTTGGTGTGGTCTCATCCTCCTTCACCGTCACGTATGGGGCA
TCTAAATTTGCAGGCAGCGTGATCACAGGCCTCTTTCAAGGCTACCTTGC
CTACAATATGGCCCGAAAGGCACTCGCTGTGGCCGCACCAGATGAGTGCA
ATAGAAAAGCTGTCGGAAGGGCGGCATGCTCGGCGACGCATCTTTGGTCC
TTTGGGTGGCCCGCCCGCGGCTTCGACACCCCTTGTCGTGACGGGGCGCG
GGCTGGCCGTCGCTGGCAAAGATTTGCGTGGAGAGAGTCGCCCCCCGGGC
ACAGGGGAGAGTGTGGGCCTTGCTCTCAGCGGCTGGGAATGCTGGTAGGG
AGGGAGAAAAGGAGGGAGGGAGGACGAGAGGGAGGGGAGCGAGGAAGGAG
GGAGCGAGGGAGCGAGGACGGAAGAGTGTGAGAGAGGGAAGGATGCTTGT
TTTGAGGGGCTGCAACAGCTCCGATTTGGTCGCGCGAATCTAAATCACGT
CTCTTGCCGCGCCCTCTTCTCGCTGGGGCTGGTGCTCACGGGCGTGCTGT
GCCTTATTTTTTCCCTGTCGTCGGAACTGCCCCGCCTGTGCCTCTTGTGG
TCGCTGCACGGGGTGGTGCAGGCTTACAAGGCGACGAGGGCCTTTCTAAG
ACTGACCTTGGTGTGGTCTCATCCTCCTTCACCGTCACGTATGGGGCATC
TAAATTTGCAGGCAGCGTGATCACAGGCCTCTTTCAAGGCTACCTTGCCT
ACAATATGGCCCGAAAGGCACTCGCTGTGGCCGCACCAGATGAGTGCAAT
AGAAAAGCTGTCGGAAGGGCGGCATGCTCGGCGACGCATCTTTGGTCCTT
TGGGTGGCCCGCCCGCGGCTTCGACACCCCTTGTCGTGACGGGGCGCGGG
CTGGCCGTCGCTGGCAAAGATTTGCGTGGAGAGAGTCGCCCCCCGGGCAC
AGGGGAGAGTGTGGGCCTTGCTCTCAGCGGCTGGGAATGCTGGTAGGGAG
GGAGAAAAGGAGGGAGGGAGGACGAGAGGGAGGGGAGCGAGGAAGGAGGG
AGCGAGGGAGCGAGGACGGAAGAGTGTGAGAGAGGGAAGGATGCTTGTTT
TGAGGGGCTGCAACAGCTCCGATTTGGTCGCGCGAATCTAAATCACGTCT
CTTGCCGCGCCCTCTTCTCGCTGGGGCTGGTGCTCACGGGCGTGCTGTGC
CTTATTTTTTCCCTGTCGTCGGAACTGCCCCGCCTGTGCCTCTTGTGGTC
GCTGCACGGGGTGGTGCAGGCTTACAAGGCGACGAGGGCCTTTCTAAGAC
TGACCTTGGTGTGGTCTCATCCTCCTTCACCGTCACGTATGGGGCATCTA
AATTTGCAGGCAGCGTGATCACAGGCCTCTTTCAAGGCTACCTTGCCTAC
AATATGGCCCGAAAGGCACTCGCTGTGGCCGCACCAGATGAGTGCAATAG
AAAAGCTGTCGGAAGGGCGGCATGCTCGGCGACGCATCTTTGGTCCTTTG
GGTGGCCCGCCCGCGGCTTCGACACCCCTTGTCGTGACGG
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Synonyms
Publications