jgi.p|Nanoce1779_2|585893, mRNA_3938 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585893
Unique Name	mRNA_3938
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1980
Alignment location	scaffold_8:443089..445068 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585979
Track	FilteredModels2
ProteinId	585893

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:443089..445068 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585893	gene_3938	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585893	mRNA_3938-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3938	CDS_3938	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:443089..445068+
coding sequence from alignment at scaffold_8:443089..445068+

mRNA sequence

>mRNA_3938 ID=mRNA_3938|Name=jgi.p|Nanoce1779_2|585893|organism=Nannochloropsis oceanica|type=mRNA|length=1980bp
CTTCAGCTATATGACCCCAGAGGCCCGAGGGGAGCCACGCTGCGTGTTAT
TCCATTGAAAATTGTGTAAAGTAGACCCGAAATTCATATGTTTCAAAATT
TGTTCACTTCTGTAGTCCCGCGATGTCAGTTGGTGGATGTCTTCATCTCT
GACTGTATCCAGAGTGTTTGTCGTGAACTAGCCACCGTCCAGTCTTTTCT
ATTCAGTTCTGCCGAGCCAAAATCTGAATCGTCTTTCTGTGCCCCTGCCA
CCCGGACGCCTCTGCCCCACATCATCTTGTCCTCCATGTTTCTCTTTCCT
ACCACAGGCAGCCGTTAAAGCATGACCTCCACCCCCGTCGCCGCCACCCC
CTGCTCCACCGAAGAACAAGACATTGTCGACGGGCTTATCACCTTCTTGA
ACGAGGCGTGGACATCGTTCCACGCCGTGCACGCCTCTGCCATGCGCTTG
CGGGCGGCCGGCTTCATCGAGCTGCAGGAGGGGGCCCCCTGGTCATTGGC
TGCTGGGGGCAAATACTTTTTTACCCGGAACATGACGACCATCGTGGCCT
TCGCTGTGGGCAGGCACTTCAATCCAGCGCAGCAGCAAAGTGTGAGTGGC
TTTACCATTATTGGCGCTCACACAGATTCACCGTGTCCGAAGCTCAAGCC
TGTGTCCAAACTTACTAAGAGTGGGTACCTCGCTTTGAGTGTGGTAGGGT
ACGGCGGGGGGCTCTGGCACACGTGGTTCGATCGCGACTTGACCTTGGCC
GGGCGCGTCTTGGTGCGGCGACCTGATGGGCGGACGACGGCGAAATTGGT
ACGGATTGATCGACCTATCCTACGCATTCCCAACCTGGCGATACATCTGC
AGTCGGATGAGGAACGTCGTGGGTTTGCTCCGAACCTACAGACACAGTTT
CCTCCCATGCTCGCTTCGGAAGTGAAGGCGCAGCTGCTGGCAGCGGCGAC
GACAGCTGCAGCAACGACGGCGGATGAAAAAAAGAAGAAGGAAGAGAAAG
TTGGGGACAAGGAGGAGAAAGGCGGTGTGGAGAGCAAGAAGCTAAAGACA
GAGCCGCAGTGGGCGTCTCCGGATCAGCAGCATCACCCGTTGCTCTTGCA
GCTTCTGGCGGAGGAATTGGGGGTGTCGGTAGAAAGTATCGTGGACATGG
AGATGCAGCTGTGTGACATCCAGCCCAGTGTCGTGGGTGGGGCATTGCAT
GAGTTCATTTTCAGCGGAAGGTTGGATAACCTCGCTTCGTCTTACCAGGC
ATTGACGGCATTGATTCACAGTTGCCAAGCCCCGGGGGCACTCGACGAGG
AGGTGAATGTTCGATTGGTTGCCTTGTTTGACCACGAAGAGATTGGGAGT
ATGTCTGCCCAAGGTGCAGCATCTTCATTGCTGCCTGAAGTTCTGCGCCG
CATCACTGCTACTGTCATCGGTGCCCCTACAGGAGGAGCAGCTGCTTTGG
AGGACGCCCTCGCGCAGGCCCTCCGTCGGTCCTTCATCGTTTCTGCGGAT
ATGGCTCATGCCCTGCACCCTAATTATGACAGCAAGCACGATCCAGGATT
GGCGCCCAAAATGCATGGCGGGTTGGTTCTCAAACATAATGTGAATCAAC
GCTACGCCACAAATGCCGTGACTGCTCACGTGTTCCGAGAATTGGGCCGA
CGGTTCGCGAAGGTGCCTTTCCAAGAGTTTGCTGTGAAGGCTGACTCGAG
GTGTGGGAGCACGATCGGGCCTTTGGTGGCGGGATTGACGGGGGTGTTGA
CGGTGGATGTCGGGAGTCCACAATGGGCGATGCACAGTGTGAGAGAGACG
ATGGCGACCAGTGATGTCTGGTATGGGTTTTTGCACTTCAAGGCTGTCTT
GGAAAGCTTTCCGGTGGTTGCCAAGGAGTGTGCGGAGGCAATGGAGAGGT
AGATAGAGAAGGAGAGTTGTGGAGGAGGAGGATGGGGCAACGGGACGATG
GAAGAAAAAGAAATGGTAGAAGAGAAAAAG

protein sequence of jgi.p|Nanoce1779_2|585893

>mRNA_3938-protein ID=mRNA_3938-protein|Name=jgi.p|Nanoce1779_2|585893|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MTSTPVAATPCSTEEQDIVDGLITFLNEAWTSFHAVHASAMRLRAAGFIE
LQEGAPWSLAAGGKYFFTRNMTTIVAFAVGRHFNPAQQQSVSGFTIIGAH
TDSPCPKLKPVSKLTKSGYLALSVVGYGGGLWHTWFDRDLTLAGRVLVRR
PDGRTTAKLVRIDRPILRIPNLAIHLQSDEERRGFAPNLQTQFPPMLASE
VKAQLLAAATTAAATTADEKKKKEEKVGDKEEKGGVESKKLKTEPQWASP
DQQHHPLLLQLLAEELGVSVESIVDMEMQLCDIQPSVVGGALHEFIFSGR
LDNLASSYQALTALIHSCQAPGALDEEVNVRLVALFDHEEIGSMSAQGAA
SSLLPEVLRRITATVIGAPTGGAAALEDALAQALRRSFIVSADMAHALHP
NYDSKHDPGLAPKMHGGLVLKHNVNQRYATNAVTAHVFRELGRRFAKVPF
QEFAVKADSRCGSTIGPLVAGLTGVLTVDVGSPQWAMHSVRETMATSDVW
YGFLHFKAVLESFPVVAKECAEAMER*

mRNA from alignment at scaffold_8:443089..445068+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3938 ID=mRNA_3938|Name=jgi.p|Nanoce1779_2|585893|organism=Nannochloropsis oceanica|type=mRNA|length=1980bp|location=Sequence derived from alignment at scaffold_8:443089..445068+ (Nannochloropsis oceanica)
CTTCAGCTATATGACCCCAGAGGCCCGAGGGGAGCCACGCTGCGTGTTAT
TCCATTGAAAATTGTGTAAAGTAGACCCGAAATTCATATGTTTCAAAATT
TGTTCACTTCTGTAGTCCCGCGATGTCAGTTGGTGGATGTCTTCATCTCT
GACTGTATCCAGAGTGTTTGTCGTGAACTAGCCACCGTCCAGTCTTTTCT
ATTCAGTTCTGCCGAGCCAAAATCTGAATCGTCTTTCTGTGCCCCTGCCA
CCCGGACGCCTCTGCCCCACATCATCTTGTCCTCCATGTTTCTCTTTCCT
ACCACAGGCAGCCGTTAAAGCATGACCTCCACCCCCGTCGCCGCCACCCC
CTGCTCCACCGAAGAACAAGACATTGTCGACGGGCTTATCACCTTCTTGA
ACGAGGCGTGGACATCGTTCCACGCCGTGCACGCCTCTGCCATGCGCTTG
CGGGCGGCCGGCTTCATCGAGCTGCAGGAGGGGGCCCCCTGGTCATTGGC
TGCTGGGGGCAAATACTTTTTTACCCGGAACATGACGACCATCGTGGCCT
TCGCTGTGGGCAGGCACTTCAATCCAGCGCAGCAGCAAAGTGTGAGTGGC
TTTACCATTATTGGCGCTCACACAGATTCACCGTGTCCGAAGCTCAAGCC
TGTGTCCAAACTTACTAAGAGTGGGTACCTCGCTTTGAGTGTGGTAGGGT
ACGGCGGGGGGCTCTGGCACACGTGGTTCGATCGCGACTTGACCTTGGCC
GGGCGCGTCTTGGTGCGGCGACCTGATGGGCGGACGACGGCGAAATTGGT
ACGGATTGATCGACCTATCCTACGCATTCCCAACCTGGCGATACATCTGC
AGTCGGATGAGGAACGTCGTGGGTTTGCTCCGAACCTACAGACACAGTTT
CCTCCCATGCTCGCTTCGGAAGTGAAGGCGCAGCTGCTGGCAGCGGCGAC
GACAGCTGCAGCAACGACGGCGGATGAAAAAAAGAAGAAGGAAGAGAAAG
TTGGGGACAAGGAGGAGAAAGGCGGTGTGGAGAGCAAGAAGCTAAAGACA
GAGCCGCAGTGGGCGTCTCCGGATCAGCAGCATCACCCGTTGCTCTTGCA
GCTTCTGGCGGAGGAATTGGGGGTGTCGGTAGAAAGTATCGTGGACATGG
AGATGCAGCTGTGTGACATCCAGCCCAGTGTCGTGGGTGGGGCATTGCAT
GAGTTCATTTTCAGCGGAAGGTTGGATAACCTCGCTTCGTCTTACCAGGC
ATTGACGGCATTGATTCACAGTTGCCAAGCCCCGGGGGCACTCGACGAGG
AGGTGAATGTTCGATTGGTTGCCTTGTTTGACCACGAAGAGATTGGGAGT
ATGTCTGCCCAAGGTGCAGCATCTTCATTGCTGCCTGAAGTTCTGCGCCG
CATCACTGCTACTGTCATCGGTGCCCCTACAGGAGGAGCAGCTGCTTTGG
AGGACGCCCTCGCGCAGGCCCTCCGTCGGTCCTTCATCGTTTCTGCGGAT
ATGGCTCATGCCCTGCACCCTAATTATGACAGCAAGCACGATCCAGGATT
GGCGCCCAAAATGCATGGCGGGTTGGTTCTCAAACATAATGTGAATCAAC
GCTACGCCACAAATGCCGTGACTGCTCACGTGTTCCGAGAATTGGGCCGA
CGGTTCGCGAAGGTGCCTTTCCAAGAGTTTGCTGTGAAGGCTGACTCGAG
GTGTGGGAGCACGATCGGGCCTTTGGTGGCGGGATTGACGGGGGTGTTGA
CGGTGGATGTCGGGAGTCCACAATGGGCGATGCACAGTGTGAGAGAGACG
ATGGCGACCAGTGATGTCTGGTATGGGTTTTTGCACTTCAAGGCTGTCTT
GGAAAGCTTTCCGGTGGTTGCCAAGGAGTGTGCGGAGGCAATGGAGAGGT
AGATAGAGAAGGAGAGTTGTGGAGGAGGAGGATGGGGCAACGGGACGATG
GAAGAAAAAGAAATGGTAGAAGAGAAAAAG

Coding sequence (CDS) from alignment at scaffold_8:443089..445068+

>mRNA_3938 ID=mRNA_3938|Name=jgi.p|Nanoce1779_2|585893|organism=Nannochloropsis oceanica|type=CDS|length=1581bp|location=Sequence derived from alignment at scaffold_8:443089..445068+ (Nannochloropsis oceanica)
ATGACCTCCACCCCCGTCGCCGCCACCCCCTGCTCCACCGAAGAACAAGA
CATTGTCGACGGGCTTATCACCTTCTTGAACGAGGCGTGGACATCGTTCC
ACGCCGTGCACGCCTCTGCCATGCGCTTGCGGGCGGCCGGCTTCATCGAG
CTGCAGGAGGGGGCCCCCTGGTCATTGGCTGCTGGGGGCAAATACTTTTT
TACCCGGAACATGACGACCATCGTGGCCTTCGCTGTGGGCAGGCACTTCA
ATCCAGCGCAGCAGCAAAGTGTGAGTGGCTTTACCATTATTGGCGCTCAC
ACAGATTCACCGTGTCCGAAGCTCAAGCCTGTGTCCAAACTTACTAAGAG
TGGGTACCTCGCTTTGAGTGTGGTAGGGTACGGCGGGGGGCTCTGGCACA
CGTGGTTCGATCGCGACTTGACCTTGGCCGGGCGCGTCTTGGTGCGGCGA
CCTGATGGGCGGACGACGGCGAAATTGGTACGGATTGATCGACCTATCCT
ACGCATTCCCAACCTGGCGATACATCTGCAGTCGGATGAGGAACGTCGTG
GGTTTGCTCCGAACCTACAGACACAGTTTCCTCCCATGCTCGCTTCGGAA
GTGAAGGCGCAGCTGCTGGCAGCGGCGACGACAGCTGCAGCAACGACGGC
GGATGAAAAAAAGAAGAAGGAAGAGAAAGTTGGGGACAAGGAGGAGAAAG
GCGGTGTGGAGAGCAAGAAGCTAAAGACAGAGCCGCAGTGGGCGTCTCCG
GATCAGCAGCATCACCCGTTGCTCTTGCAGCTTCTGGCGGAGGAATTGGG
GGTGTCGGTAGAAAGTATCGTGGACATGGAGATGCAGCTGTGTGACATCC
AGCCCAGTGTCGTGGGTGGGGCATTGCATGAGTTCATTTTCAGCGGAAGG
TTGGATAACCTCGCTTCGTCTTACCAGGCATTGACGGCATTGATTCACAG
TTGCCAAGCCCCGGGGGCACTCGACGAGGAGGTGAATGTTCGATTGGTTG
CCTTGTTTGACCACGAAGAGATTGGGAGTATGTCTGCCCAAGGTGCAGCA
TCTTCATTGCTGCCTGAAGTTCTGCGCCGCATCACTGCTACTGTCATCGG
TGCCCCTACAGGAGGAGCAGCTGCTTTGGAGGACGCCCTCGCGCAGGCCC
TCCGTCGGTCCTTCATCGTTTCTGCGGATATGGCTCATGCCCTGCACCCT
AATTATGACAGCAAGCACGATCCAGGATTGGCGCCCAAAATGCATGGCGG
GTTGGTTCTCAAACATAATGTGAATCAACGCTACGCCACAAATGCCGTGA
CTGCTCACGTGTTCCGAGAATTGGGCCGACGGTTCGCGAAGGTGCCTTTC
CAAGAGTTTGCTGTGAAGGCTGACTCGAGGTGTGGGAGCACGATCGGGCC
TTTGGTGGCGGGATTGACGGGGGTGTTGACGGTGGATGTCGGGAGTCCAC
AATGGGCGATGCACAGTGTGAGAGAGACGATGGCGACCAGTGATGTCTGG
TATGGGTTTTTGCACTTCAAGGCTGTCTTGGAAAGCTTTCCGGTGGTTGC
CAAGGAGTGTGCGGAGGCAATGGAGAGGTAG

Synonyms

Publications