jgi.p|Nanoce1779_2|586139, gene_4012 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586139
Unique Namegene_4012
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_8:631449..636462 +

Link to JBrowse

Properties
Property NameValue
TranscriptId586225
ProteinId586139
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:631449..636462 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL004ncniL004Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02010NO10G02010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586139mRNA_4012-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586139mRNA_4012Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|586139

>mRNA_4012-protein ID=mRNA_4012-protein|Name=jgi.p|Nanoce1779_2|586139|organism=Nannochloropsis oceanica|type=polypeptide|length=1168bp
MSLLKQVEDKNANLAWSPVPDQGNLVALGTRDGGGGGFDDYGGELEIHKL
DFGIGDTRTKVMGTVRTNGRFTALAWSALNNKRADFALGVVAGGLADGTV
AIWDPAKLVANHPQPRIAAVQRHTGPVNGLHFNPSATSSHLLASGGADNE
VFVYALDRPDTPNVFIPAPAPNTAKHTAEVSKVAWNPQVPHILASCSGNG
SSIVWDLRQKKPYCELRDPARGPVADIAWNPDEGLHMVTASGDDNNPVIR
LWDLRSSTTHPLATLKGHDQGLLSVSWCPFDSSFLLSTGRDNRTLLWDLH
HASPIYELPSSIPEAGSTGYGGYGASQQRRYNATWSPILPAVVGTSSFNR
TVEFYSLTGVRSTTGRAPKWLRRPVAASFGWGGQLVHVDNGAAAKTAKPA
GAPGAPRGGPGGKKPMVHLRGLVEDTELVAASKEFKEIVLSQDYPSFCAA
RASAAKTGEERQVWAVLQTIVDKESKSQLNHTLGYDGASIAAAAAAATAA
LRSKAKTPSPAGAAPPIASTSHSRSSSTASGGLGAAEGWGDLGDEVDGFS
APASGPGVETVTGTLAGLRMAGKATPYPEAEAHVKRALLAGGLEAAVQAC
LEHDLVAEALLLASAPDADPGVWARTKDAYVSRHAGQRPLLRIIDAVLKS
DMSELVGSSDLIQWQETLALLNTYTTGETFAGLTELLGTRLETERRDRAS
ATLCYLCSLNIGKAVRFWVDTLQEAKQRLGRTDTLALHHFVEKVTICLSA
AEQQGQAPVLPADVAVLFTEYAEILAAQGELDMAYTFVKNIPDPSTALLK
DRLFRASITLQANEPEPAGPFDIKHIGMTPASPTRTAVPATVPVGQHQEH
VVTAAPSAYGQQKPSLGAGASGAGAAAASPHALPPHWVAVTDPSSGQVYF
YNESTRETSWEKPVVAAAPIHVPAAVPAAQASYGGMPPTQQQQSQMQQPA
HHPATLSGTKPLDYYADSFTSSHGNAALMQKYGNVGSMPQQPHIPQQQQQ
QQFGMEQQQPSMVGGIGMNMGMGQPTVFQPNKVPQNPNPTPVAAPTKPPS
PVMPAAPAEPPAEALPTLANLNNLVSALAASSALSAGDKRQLNDVTKGIA
ALSNKLGLGEVGPDVLVRVGQFADCCFNRDFASATAIQSEFTLSIWDTQK
EWIKPLKLLIMLGKKGF*
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Synonyms
Publications