jgi.p|Nanoce1779_2|586452, mRNA_4083 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586452
Unique NamemRNA_4083
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1461
Alignment locationscaffold_8:795662..797122 +

Link to JBrowse

Properties
Property NameValue
TranscriptId586538
TrackFilteredModels2
ProteinId586452
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:795662..797122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586452gene_4083Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586452mRNA_4083-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4083CDS_4083Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4083 ID=mRNA_4083|Name=jgi.p|Nanoce1779_2|586452|organism=Nannochloropsis oceanica|type=mRNA|length=1461bp
AACAGACCTAATCCCGCCACATGCAATGAAATCGTGGACGTGCGCCGCCT
GTACCTACACCAATGAGCGCGAATCCGCTTTTTGTCAAATCTGTGCCTCA
GGCCGCCCCAGCGTCTCGCATGCTCCCATCGATTTGCGCTCCCCACCTTC
GGCCGAAGGCAAGAAGGCAGACAACGCCAATACCAACAAGAAGGCATTCA
GCATAGCAGCCTCGCGAGCAGAACGGCAACAGGACGATAACGGCGATACT
GGGATCGAAACTCAACCGGCAGAAGAGAGGCGTGCCAGCAACCCTTTTTC
TTCCTTCGTCTACAACGGTGATGACGGCGAGGACGACACTACGATCTCCT
CCGCCACGGTCCGGGCCTTTGCGTTCATGCACCCGCCGCAAATAGCTAAG
CGACCTTTGAGCAAGCTGCTGAGCGACGGTTGTGGCGGCGGCGCCGGTGA
GGATGGGGCAGGGGACGAGGTCGCGCCGAAAAAGAAGACCAAAAGAAACC
AACACGCATGCGGTGAGGGGGCTCCTGAGGACTTTGAAAAGGAAAGCGAA
GACACCAAAAATGCGACTGTGCTAAAATGGAGGCGAATATTGGGGCCTTT
GGCCAAGCGAACGGGGACTGGAAACAGCGGTATTCAAGCGCGAGGTGGTG
AAGGAGGAGGAGAGGAAGTGAAGGCGGACACCGGCAAGAATGTCATAAAC
CAGACAAGAGCAAAAGAAGTAGGAGGAAAAGAAATGGAAGCAGTTACCCC
CGGAACTGACTCTATCGCTGACTATAATCCTAGCAATCTTAACCGCTTTC
GCCTACTCGTCGCCGTCATTCTCTCATCGCGCACTCAAGAGCAAATCGTG
CGCCGATCCATCCAAACCATCGAGCAGTGCTACCCTGGCCGACAATTCTC
CCCCCACTTTTTTGCCTCTTCCATTGAGTCCTGGGAGACCCTTTCTGAAA
AGTTGTCATTCGTACATTGCAATAAAGTCAAAAGCCGGCACATCCTACAA
ACAGCCAATGTAATCGAGAAGGAATTTGGGGGCCATGTCCCTAAGAGGAA
GGAGCAGCTGTTAAAAATGGCAGGGATTGGACCGACCCTAGCTCCGTTGC
TGGAATTTTTGTTTGCGTGGCTTGACAAAGAAGAGAGAGAGGACGAGGAG
GATGGGAAAGAGGGAGGGAGGAAGCAGGAAACGCAGGAGGGAGAAGCGCA
AGTACCTCAGGGGCAGCAATATCAGCAGGAGCAGCAGCCCATGCCATCGG
CGTTTCGAGGACATGGAGGAGACGTAAAATTGGAGAATGAAGACGGTGAG
ATCATAATCGTGGGATAGTAAATATAGTGGAAGCAATGACTTGTACAGCG
AAGAAGGGGAGGAGGCAGGGGAGGGAGGAAATGGAGGGATGCAGTCGACG
AAATGTTTTGACATCAAAATAACGCGCGATGCGTCAGAAAGAATGTAAAT
ACCTATGCAGG
back to top

protein sequence of jgi.p|Nanoce1779_2|586452

>mRNA_4083-protein ID=mRNA_4083-protein|Name=jgi.p|Nanoce1779_2|586452|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp
MKSWTCAACTYTNERESAFCQICASGRPSVSHAPIDLRSPPSAEGKKADN
ANTNKKAFSIAASRAERQQDDNGDTGIETQPAEERRASNPFSSFVYNGDD
GEDDTTISSATVRAFAFMHPPQIAKRPLSKLLSDGCGGGAGEDGAGDEVA
PKKKTKRNQHACGEGAPEDFEKESEDTKNATVLKWRRILGPLAKRTGTGN
SGIQARGGEGGGEEVKADTGKNVINQTRAKEVGGKEMEAVTPGTDSIADY
NPSNLNRFRLLVAVILSSRTQEQIVRRSIQTIEQCYPGRQFSPHFFASSI
ESWETLSEKLSFVHCNKVKSRHILQTANVIEKEFGGHVPKRKEQLLKMAG
IGPTLAPLLEFLFAWLDKEEREDEEDGKEGGRKQETQEGEAQVPQGQQYQ
QEQQPMPSAFRGHGGDVKLENEDGEIIIVG*
back to top

mRNA from alignment at scaffold_8:795662..797122+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4083 ID=mRNA_4083|Name=jgi.p|Nanoce1779_2|586452|organism=Nannochloropsis oceanica|type=mRNA|length=1461bp|location=Sequence derived from alignment at scaffold_8:795662..797122+ (Nannochloropsis oceanica)
AACAGACCTAATCCCGCCACATGCAATGAAATCGTGGACGTGCGCCGCCT
GTACCTACACCAATGAGCGCGAATCCGCTTTTTGTCAAATCTGTGCCTCA
GGCCGCCCCAGCGTCTCGCATGCTCCCATCGATTTGCGCTCCCCACCTTC
GGCCGAAGGCAAGAAGGCAGACAACGCCAATACCAACAAGAAGGCATTCA
GCATAGCAGCCTCGCGAGCAGAACGGCAACAGGACGATAACGGCGATACT
GGGATCGAAACTCAACCGGCAGAAGAGAGGCGTGCCAGCAACCCTTTTTC
TTCCTTCGTCTACAACGGTGATGACGGCGAGGACGACACTACGATCTCCT
CCGCCACGGTCCGGGCCTTTGCGTTCATGCACCCGCCGCAAATAGCTAAG
CGACCTTTGAGCAAGCTGCTGAGCGACGGTTGTGGCGGCGGCGCCGGTGA
GGATGGGGCAGGGGACGAGGTCGCGCCGAAAAAGAAGACCAAAAGAAACC
AACACGCATGCGGTGAGGGGGCTCCTGAGGACTTTGAAAAGGAAAGCGAA
GACACCAAAAATGCGACTGTGCTAAAATGGAGGCGAATATTGGGGCCTTT
GGCCAAGCGAACGGGGACTGGAAACAGCGGTATTCAAGCGCGAGGTGGTG
AAGGAGGAGGAGAGGAAGTGAAGGCGGACACCGGCAAGAATGTCATAAAC
CAGACAAGAGCAAAAGAAGTAGGAGGAAAAGAAATGGAAGCAGTTACCCC
CGGAACTGACTCTATCGCTGACTATAATCCTAGCAATCTTAACCGCTTTC
GCCTACTCGTCGCCGTCATTCTCTCATCGCGCACTCAAGAGCAAATCGTG
CGCCGATCCATCCAAACCATCGAGCAGTGCTACCCTGGCCGACAATTCTC
CCCCCACTTTTTTGCCTCTTCCATTGAGTCCTGGGAGACCCTTTCTGAAA
AGTTGTCATTCGTACATTGCAATAAAGTCAAAAGCCGGCACATCCTACAA
ACAGCCAATGTAATCGAGAAGGAATTTGGGGGCCATGTCCCTAAGAGGAA
GGAGCAGCTGTTAAAAATGGCAGGGATTGGACCGACCCTAGCTCCGTTGC
TGGAATTTTTGTTTGCGTGGCTTGACAAAGAAGAGAGAGAGGACGAGGAG
GATGGGAAAGAGGGAGGGAGGAAGCAGGAAACGCAGGAGGGAGAAGCGCA
AGTACCTCAGGGGCAGCAATATCAGCAGGAGCAGCAGCCCATGCCATCGG
CGTTTCGAGGACATGGAGGAGACGTAAAATTGGAGAATGAAGACGGTGAG
ATCATAATCGTGGGATAGTAAATATAGTGGAAGCAATGACTTGTACAGCG
AAGAAGGGGAGGAGGCAGGGGAGGGAGGAAATGGAGGGATGCAGTCGACG
AAATGTTTTGACATCAAAATAACGCGCGATGCGTCAGAAAGAATGTAAAT
ACCTATGCAGG
back to top

Coding sequence (CDS) from alignment at scaffold_8:795662..797122+

>mRNA_4083 ID=mRNA_4083|Name=jgi.p|Nanoce1779_2|586452|organism=Nannochloropsis oceanica|type=CDS|length=1293bp|location=Sequence derived from alignment at scaffold_8:795662..797122+ (Nannochloropsis oceanica)
ATGAAATCGTGGACGTGCGCCGCCTGTACCTACACCAATGAGCGCGAATC
CGCTTTTTGTCAAATCTGTGCCTCAGGCCGCCCCAGCGTCTCGCATGCTC
CCATCGATTTGCGCTCCCCACCTTCGGCCGAAGGCAAGAAGGCAGACAAC
GCCAATACCAACAAGAAGGCATTCAGCATAGCAGCCTCGCGAGCAGAACG
GCAACAGGACGATAACGGCGATACTGGGATCGAAACTCAACCGGCAGAAG
AGAGGCGTGCCAGCAACCCTTTTTCTTCCTTCGTCTACAACGGTGATGAC
GGCGAGGACGACACTACGATCTCCTCCGCCACGGTCCGGGCCTTTGCGTT
CATGCACCCGCCGCAAATAGCTAAGCGACCTTTGAGCAAGCTGCTGAGCG
ACGGTTGTGGCGGCGGCGCCGGTGAGGATGGGGCAGGGGACGAGGTCGCG
CCGAAAAAGAAGACCAAAAGAAACCAACACGCATGCGGTGAGGGGGCTCC
TGAGGACTTTGAAAAGGAAAGCGAAGACACCAAAAATGCGACTGTGCTAA
AATGGAGGCGAATATTGGGGCCTTTGGCCAAGCGAACGGGGACTGGAAAC
AGCGGTATTCAAGCGCGAGGTGGTGAAGGAGGAGGAGAGGAAGTGAAGGC
GGACACCGGCAAGAATGTCATAAACCAGACAAGAGCAAAAGAAGTAGGAG
GAAAAGAAATGGAAGCAGTTACCCCCGGAACTGACTCTATCGCTGACTAT
AATCCTAGCAATCTTAACCGCTTTCGCCTACTCGTCGCCGTCATTCTCTC
ATCGCGCACTCAAGAGCAAATCGTGCGCCGATCCATCCAAACCATCGAGC
AGTGCTACCCTGGCCGACAATTCTCCCCCCACTTTTTTGCCTCTTCCATT
GAGTCCTGGGAGACCCTTTCTGAAAAGTTGTCATTCGTACATTGCAATAA
AGTCAAAAGCCGGCACATCCTACAAACAGCCAATGTAATCGAGAAGGAAT
TTGGGGGCCATGTCCCTAAGAGGAAGGAGCAGCTGTTAAAAATGGCAGGG
ATTGGACCGACCCTAGCTCCGTTGCTGGAATTTTTGTTTGCGTGGCTTGA
CAAAGAAGAGAGAGAGGACGAGGAGGATGGGAAAGAGGGAGGGAGGAAGC
AGGAAACGCAGGAGGGAGAAGCGCAAGTACCTCAGGGGCAGCAATATCAG
CAGGAGCAGCAGCCCATGCCATCGGCGTTTCGAGGACATGGAGGAGACGT
AAAATTGGAGAATGAAGACGGTGAGATCATAATCGTGGGATAG
back to top
Synonyms
Publications