jgi.p|Nanoce1779_2|527665, mRNA_4716 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|527665
Unique Name	mRNA_4716
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1482
Alignment location	scaffold_9:467734..469502 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	527751
Track	FilteredModels2
ProteinId	527665

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:467734..469502 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|527665	gene_4716	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|527665	mRNA_4716-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4716	CDS_4716	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:467734..469502+
coding sequence from alignment at scaffold_9:467734..469502+

mRNA sequence

>mRNA_4716 ID=mRNA_4716|Name=jgi.p|Nanoce1779_2|527665|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp
ATGGACGGGTATAAAATCATAGATGCTGATGAGTTGCGTGCCACCATGTC
AGCGCTCGTCGGAGACATCTCCTCCGTCCTTGCTATCCACCCTTGTGCGG
CCGCGGCCTTACTCCGCCATAACAGCTGGAACAAGGAAGCGGTCATCGAT
TCCTTCTGCACCGATTCGGAGAAAGCCAAGGAGAAAGCCGGTATTGCCCG
GTTTGTTCTCGAGTTGCAAAAGACGGACAACGGCCAAGTTTGTGGCATCT
GCCGCGATGAGGTCCATGCCTCGGAGCTGGTCGCAGTGGGGTGTGGCCAT
TACTTTTGCCGCGCGTGTTACACGCAGTACTTATCTTCGAAGGTGGGCGA
GGGGATTTGCTGTCCCTTGACGCGGTGCCCGGAGTACAAATGTTCGGAGG
TGGTGACGGAGAACATCTTTCGGGCCCTCGTGCCCCCCCCAGTGTTGGCG
ACGTATTTGAGATATAACCTGAAGAGCTACGTGGACATGAGCAATGCTTT
CCGATGGTGCCCGGGAAGGGGCTGTGATTATGTTGCAATGGGGAACAGCA
TCTTGCGGTCGTGCTTGTGCAAGTGCGGGGTATTGTTCTGTTTCCGGTGT
GGAGAGGAGGCGCATGTCCCGGCGACTTGCGACGATATGATCACATGGGC
CGAGAAGTGCAAGAATGAAAGTGAGACGGCGAACTGGATTTTGGCCAACA
CTAGGAAATGCCCCAAATGCATGACACGGATCGAGAAAAACCAGGGCTGC
AACCACATGACCTGCCGCCAGTGTAAGTTCGAGTTCTGTTGGATCTGCAT
GGGCCCTTGGACGGACCACGGGGCAAACACCGGGGGCTACTACAAGTGCA
ACAAATACGACCCCGCCGCCCCCACCAAGGACGAGCAAGATGGCGCAAAG
GCCAAGGCGGAGCTGGACCGGTACCTGCACTACTACAAGCGGTACGACAA
TCACCACAAGGCCCAAGAATACGCGACCAAGCAAGAGGAAGAGATCGAAC
GGCGAATGATGCGCCTCCAGGAAACGGACGGCTCCCGGTGGATCGACGTG
CAGTTCCTCAAGGCGGCCAACGAGAAGCTGGTGGAGTGCCGGCGTGTGCT
CAAGTACACGTACGTCTTCGGCTACTACCTCCCAGAGGGAACGGCGAGGA
AGAGGCTCTTCGAGCACCATCAAGAGAACCTGGAAAAATTCACCGAGCAC
CTGTCGTGGTTGTCGGAGCAGGGTTTGGAGGAGTTTAAGAAGGAGGAGAA
GAGGAGCGAGGTGGTGAATTACACCAGGGTGACGGAGACGTTCCTGAAGA
ATTTGTTGAAGAGCGTTGAGGATGGGCTCGTGGAAGAGGAGGTGGAGGAG
GAGGGAGGGGGGGACAAGGGGAAGAAGAAGGGAGGGGAGGGGGAGAAGGA
GGCGAAGAGTACCGCGGCAGTGAGCAGTGGAGGAGGAGGAGGAAGAGGGA
GGGGACGGATGAGTGGGGCGGTGGAGGCGTGA

protein sequence of jgi.p|Nanoce1779_2|527665

>mRNA_4716-protein ID=mRNA_4716-protein|Name=jgi.p|Nanoce1779_2|527665|organism=Nannochloropsis oceanica|type=polypeptide|length=494bp
MDGYKIIDADELRATMSALVGDISSVLAIHPCAAAALLRHNSWNKEAVID
SFCTDSEKAKEKAGIARFVLELQKTDNGQVCGICRDEVHASELVAVGCGH
YFCRACYTQYLSSKVGEGICCPLTRCPEYKCSEVVTENIFRALVPPPVLA
TYLRYNLKSYVDMSNAFRWCPGRGCDYVAMGNSILRSCLCKCGVLFCFRC
GEEAHVPATCDDMITWAEKCKNESETANWILANTRKCPKCMTRIEKNQGC
NHMTCRQCKFEFCWICMGPWTDHGANTGGYYKCNKYDPAAPTKDEQDGAK
AKAELDRYLHYYKRYDNHHKAQEYATKQEEEIERRMMRLQETDGSRWIDV
QFLKAANEKLVECRRVLKYTYVFGYYLPEGTARKRLFEHHQENLEKFTEH
LSWLSEQGLEEFKKEEKRSEVVNYTRVTETFLKNLLKSVEDGLVEEEVEE
EGGGDKGKKKGGEGEKEAKSTAAVSSGGGGGRGRGRMSGAVEA*

mRNA from alignment at scaffold_9:467734..469502+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4716 ID=mRNA_4716|Name=jgi.p|Nanoce1779_2|527665|organism=Nannochloropsis oceanica|type=mRNA|length=1769bp|location=Sequence derived from alignment at scaffold_9:467734..469502+ (Nannochloropsis oceanica)
ATGGACGGGTATAAAATCATAGATGCTGATGAGTTGCGTGCCACCATGTC
AGCGCTCGTCGGAGACATCTCCTCCGTCCTTGCTATCCACCCTTGTGCGG
CCGCGGCCTTACTCCGCCATAACAGCTGGAACAAGGAAGCGGTCATCGAT
TCCTTCTGCACCGATTCGGAGAAAGCCAAGGAGAAAGCCGGTATTGCCCG
GTTTGTTCTCGAGTTGCAAAAGACGGACAACGGCCAAGTTTGTGGCATCT
GCCGCGATGAGGTCCATGCCTCGGAGCTGGTCGCAGTGGGGTGTGGCCAT
TACTTTTGCCGCGCGTGTTACACGCAGTACTTATCTTCGAAGGTGGGCGA
GGGGATTTGCTGTCCCTTGACGCGGTGCCCGGAGTACAAATGTTCGGAGG
TGGTGACGGAGAACATCTTTCGGGCCCTCGTGCCCCCCCCAGTGTTGGCG
ACGTATTTGAGATATAACCTGAAGAGCTACGTGGACATGAGCAATGCTTT
CCGATGGTGCCCGGGAAGGGGCTGTGATTATGTTGCAATGGGGAACAGCA
TCTTGCGGTCGTGCTTGTGCAAGTGCGGGGTATTGTTCTGTTTCCGGTGT
GGAGAGGAGGCGCATGTCCCGGCGACTTGCGACGATATGATCACATGGGC
CGAGAAGTGCAAGAATGAAAGTGAGACGGCGAACTGGATTTTGGCCAACA
CTAGGAAATGCCCCAAATGCATGACACGGATCGAGAAAAACCAGGTTTGT
ACTACCCACCCCTCCCTCCTTCCTTCCCTCTCTCCTTTCTTCCCTCCTTC
CCTCCCCCCTGAGGCCCTGAAGAGAGCTCGGTCATTTCAACTCCTGAACC
TTTCCTCCCTCCCTCCTTTCTCCCCAGGGCTGCAACCACATGACCTGCCG
CCAGTGTAAGTTCGAGTTCTGTTGGATCTGCATGGGCCCTTGGACGGACC
ACGGGGCAAACACCGGGGGCTACTACAAGTGCAACAAATACGACCCCGCC
GCCCCCACCAAGGACGAGCAAGATGGCGCAAAGGCCAAGGCGGAGGTAAG
CACTCTCTTCGCCTTTCCCTTTCTGGTTCTCCCTGTTCTCCTTCACCCTT
CTTCCCTTCCTCTCTCGAACACGCAGAGAAGTTCGAACGATGGAGGCACT
CATCCTCCTCCCTTCCCTCTTTCCCTCCCTCCCTCCCTCCAACTTCTAGC
TGGACCGGTACCTGCACTACTACAAGCGGTACGACAATCACCACAAGGCC
CAAGAATACGCGACCAAGCAAGAGGAAGAGATCGAACGGCGAATGATGCG
CCTCCAGGAAACGGACGGCTCCCGGTGGATCGACGTGCAGTTCCTCAAGG
CGGCCAACGAGAAGCTGGTGGAGTGCCGGCGTGTGCTCAAGTACACGTAC
GTCTTCGGCTACTACCTCCCAGAGGGAACGGCGAGGAAGAGGCTCTTCGA
GCACCATCAAGAGAACCTGGAAAAATTCACCGAGCACCTGTCGTGGTTGT
CGGAGCAGGGTTTGGAGGAGTTTAAGAAGGAGGAGAAGAGGAGCGAGGTG
GTGAATTACACCAGGGTGACGGAGACGTTCCTGAAGAATTTGTTGAAGAG
CGTTGAGGATGGGCTCGTGGAAGAGGAGGTGGAGGAGGAGGGAGGGGGGG
ACAAGGGGAAGAAGAAGGGAGGGGAGGGGGAGAAGGAGGCGAAGAGTACC
GCGGCAGTGAGCAGTGGAGGAGGAGGAGGAAGAGGGAGGGGACGGATGAG
TGGGGCGGTGGAGGCGTGA

Coding sequence (CDS) from alignment at scaffold_9:467734..469502+

>mRNA_4716 ID=mRNA_4716|Name=jgi.p|Nanoce1779_2|527665|organism=Nannochloropsis oceanica|type=CDS|length=4446bp|location=Sequence derived from alignment at scaffold_9:467734..469502+ (Nannochloropsis oceanica)
ATGGACGGGTATAAAATCATAGATGCTGATGAGTTGCGTGCCACCATGTC
AGCGCTCGTCGGAGACATCTCCTCCGTCCTTGCTATCCACCCTTGTGCGG
CCGCGGCCTTACTCCGCCATAACAGCTGGAACAAGGAAGCGGTCATCGAT
TCCTTCTGCACCGATTCGGAGAAAGCCAAGGAGAAAGCCGGTATTGCCCG
GTTTGTTCTCGAGTTGCAAAAGACGGACAACGGCCAAGTTTGTGGCATCT
GCCGCGATGAGGTCCATGCCTCGGAGCTGGTCGCAGTGGGGTGTGGCCAT
TACTTTTGCCGCGCGTGTTACACGCAGTACTTATCTTCGAAGGTGGGCGA
GGGGATTTGCTGTCCCTTGACGCGGTGCCCGGAGTACAAATGTTCGGAGG
TGGTGACGGAGAACATCTTTCGGGCCCTCGTGCCCCCCCCAGTGTTGGCG
ACGTATTTGAGATATAACCTGAAGAGCTACGTGGACATGAGCAATGCTTT
CCGATGGTGCCCGGGAAGGGGCTGTGATTATGTTGCAATGGGGAACAGCA
TCTTGCGGTCGTGCTTGTGCAAGTGCGGGGTATTGTTCTGTTTCCGGTGT
GGAGAGGAGGCGCATGTCCCGGCGACTTGCGACGATATGATCACATGGGC
CGAGAAGTGCAAGAATGAAAGTGAGACGGCGAACTGGATTTTGGCCAACA
CTAGGAAATGCCCCAAATGCATGACACGGATCGAGAAAAACCAGGGCTGC
AACCACATGACCTGCCGCCAGTGTAAGTTCGAGTTCTGTTGGATCTGCAT
GGGCCCTTGGACGGACCACGGGGCAAACACCGGGGGCTACTACAAGTGCA
ACAAATACGACCCCGCCGCCCCCACCAAGGACGAGCAAGATGGCGCAAAG
GCCAAGGCGGAGCTGGACCGGTACCTGCACTACTACAAGCGGTACGACAA
TCACCACAAGGCCCAAGAATACGCGACCAAGCAAGAGGAAGAGATCGAAC
GGCGAATGATGCGCCTCCAGGAAACGGACGGCTCCCGGTGGATCGACGTG
CAGTTCCTCAAGGCGGCCAACGAGAAGCTGGTGGAGTGCCGGCGTGTGCT
CAAGTACACGTACGTCTTCGGCTACTACCTCCCAGAGGGAACGGCGAGGA
AGAGGCTCTTCGAGCACCATCAAGAGAACCTGGAAAAATTCACCGAGCAC
CTGTCGTGGTTGTCGGAGCAGGGTTTGGAGGAGTTTAAGAAGGAGGAGAA
GAGGAGCGAGGTGGTGAATTACACCAGGGTGACGGAGACGTTCCTGAAGA
ATTTGTTGAAGAGCGTTGAGGATGGGCTCGTGGAAGAGGAGGTGGAGGAG
GAGGGAGGGGGGGACAAGGGGAAGAAGAAGGGAGGGGAGGGGGAGAAGGA
GGCGAAGAGTACCGCGGCAGTGAGCAGTGGAGGAGGAGGAGGAAGAGGGA
GGGGACGGATGAGTGGGGCGGTGGAGGCGTGAATGGACGGGTATAAAATC
ATAGATGCTGATGAGTTGCGTGCCACCATGTCAGCGCTCGTCGGAGACAT
CTCCTCCGTCCTTGCTATCCACCCTTGTGCGGCCGCGGCCTTACTCCGCC
ATAACAGCTGGAACAAGGAAGCGGTCATCGATTCCTTCTGCACCGATTCG
GAGAAAGCCAAGGAGAAAGCCGGTATTGCCCGGTTTGTTCTCGAGTTGCA
AAAGACGGACAACGGCCAAGTTTGTGGCATCTGCCGCGATGAGGTCCATG
CCTCGGAGCTGGTCGCAGTGGGGTGTGGCCATTACTTTTGCCGCGCGTGT
TACACGCAGTACTTATCTTCGAAGGTGGGCGAGGGGATTTGCTGTCCCTT
GACGCGGTGCCCGGAGTACAAATGTTCGGAGGTGGTGACGGAGAACATCT
TTCGGGCCCTCGTGCCCCCCCCAGTGTTGGCGACGTATTTGAGATATAAC
CTGAAGAGCTACGTGGACATGAGCAATGCTTTCCGATGGTGCCCGGGAAG
GGGCTGTGATTATGTTGCAATGGGGAACAGCATCTTGCGGTCGTGCTTGT
GCAAGTGCGGGGTATTGTTCTGTTTCCGGTGTGGAGAGGAGGCGCATGTC
CCGGCGACTTGCGACGATATGATCACATGGGCCGAGAAGTGCAAGAATGA
AAGTGAGACGGCGAACTGGATTTTGGCCAACACTAGGAAATGCCCCAAAT
GCATGACACGGATCGAGAAAAACCAGGGCTGCAACCACATGACCTGCCGC
CAGTGTAAGTTCGAGTTCTGTTGGATCTGCATGGGCCCTTGGACGGACCA
CGGGGCAAACACCGGGGGCTACTACAAGTGCAACAAATACGACCCCGCCG
CCCCCACCAAGGACGAGCAAGATGGCGCAAAGGCCAAGGCGGAGCTGGAC
CGGTACCTGCACTACTACAAGCGGTACGACAATCACCACAAGGCCCAAGA
ATACGCGACCAAGCAAGAGGAAGAGATCGAACGGCGAATGATGCGCCTCC
AGGAAACGGACGGCTCCCGGTGGATCGACGTGCAGTTCCTCAAGGCGGCC
AACGAGAAGCTGGTGGAGTGCCGGCGTGTGCTCAAGTACACGTACGTCTT
CGGCTACTACCTCCCAGAGGGAACGGCGAGGAAGAGGCTCTTCGAGCACC
ATCAAGAGAACCTGGAAAAATTCACCGAGCACCTGTCGTGGTTGTCGGAG
CAGGGTTTGGAGGAGTTTAAGAAGGAGGAGAAGAGGAGCGAGGTGGTGAA
TTACACCAGGGTGACGGAGACGTTCCTGAAGAATTTGTTGAAGAGCGTTG
AGGATGGGCTCGTGGAAGAGGAGGTGGAGGAGGAGGGAGGGGGGGACAAG
GGGAAGAAGAAGGGAGGGGAGGGGGAGAAGGAGGCGAAGAGTACCGCGGC
AGTGAGCAGTGGAGGAGGAGGAGGAAGAGGGAGGGGACGGATGAGTGGGG
CGGTGGAGGCGTGAATGGACGGGTATAAAATCATAGATGCTGATGAGTTG
CGTGCCACCATGTCAGCGCTCGTCGGAGACATCTCCTCCGTCCTTGCTAT
CCACCCTTGTGCGGCCGCGGCCTTACTCCGCCATAACAGCTGGAACAAGG
AAGCGGTCATCGATTCCTTCTGCACCGATTCGGAGAAAGCCAAGGAGAAA
GCCGGTATTGCCCGGTTTGTTCTCGAGTTGCAAAAGACGGACAACGGCCA
AGTTTGTGGCATCTGCCGCGATGAGGTCCATGCCTCGGAGCTGGTCGCAG
TGGGGTGTGGCCATTACTTTTGCCGCGCGTGTTACACGCAGTACTTATCT
TCGAAGGTGGGCGAGGGGATTTGCTGTCCCTTGACGCGGTGCCCGGAGTA
CAAATGTTCGGAGGTGGTGACGGAGAACATCTTTCGGGCCCTCGTGCCCC
CCCCAGTGTTGGCGACGTATTTGAGATATAACCTGAAGAGCTACGTGGAC
ATGAGCAATGCTTTCCGATGGTGCCCGGGAAGGGGCTGTGATTATGTTGC
AATGGGGAACAGCATCTTGCGGTCGTGCTTGTGCAAGTGCGGGGTATTGT
TCTGTTTCCGGTGTGGAGAGGAGGCGCATGTCCCGGCGACTTGCGACGAT
ATGATCACATGGGCCGAGAAGTGCAAGAATGAAAGTGAGACGGCGAACTG
GATTTTGGCCAACACTAGGAAATGCCCCAAATGCATGACACGGATCGAGA
AAAACCAGGGCTGCAACCACATGACCTGCCGCCAGTGTAAGTTCGAGTTC
TGTTGGATCTGCATGGGCCCTTGGACGGACCACGGGGCAAACACCGGGGG
CTACTACAAGTGCAACAAATACGACCCCGCCGCCCCCACCAAGGACGAGC
AAGATGGCGCAAAGGCCAAGGCGGAGCTGGACCGGTACCTGCACTACTAC
AAGCGGTACGACAATCACCACAAGGCCCAAGAATACGCGACCAAGCAAGA
GGAAGAGATCGAACGGCGAATGATGCGCCTCCAGGAAACGGACGGCTCCC
GGTGGATCGACGTGCAGTTCCTCAAGGCGGCCAACGAGAAGCTGGTGGAG
TGCCGGCGTGTGCTCAAGTACACGTACGTCTTCGGCTACTACCTCCCAGA
GGGAACGGCGAGGAAGAGGCTCTTCGAGCACCATCAAGAGAACCTGGAAA
AATTCACCGAGCACCTGTCGTGGTTGTCGGAGCAGGGTTTGGAGGAGTTT
AAGAAGGAGGAGAAGAGGAGCGAGGTGGTGAATTACACCAGGGTGACGGA
GACGTTCCTGAAGAATTTGTTGAAGAGCGTTGAGGATGGGCTCGTGGAAG
AGGAGGTGGAGGAGGAGGGAGGGGGGGACAAGGGGAAGAAGAAGGGAGGG
GAGGGGGAGAAGGAGGCGAAGAGTACCGCGGCAGTGAGCAGTGGAGGAGG
AGGAGGAAGAGGGAGGGGACGGATGAGTGGGGCGGTGGAGGCGTGA

Synonyms

Publications