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Properties
Property Name | Value |
TranscriptId | 6090 |
Track | FilteredModels2 |
ProteinId | 6004 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_1 | supercontig | scaffold_1:520950..522892 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1426 ID=mRNA_1426|Name=jgi.p|Nanoce1779_2|6004|organism=Nannochloropsis oceanica|type=mRNA|length=1943bp GAGCACAGTGTGTGTATGAAAGGGTTGGAGAGAGGGGAGGAATGGTGGGG AGGTCGCCGGCGGCCCACTGACGGCCCGGGTTCGCCTAATGAATTCTTCC ATGGTCTTGTTTTTCCCCCCACACACGTGCGTATACACACAATCGCACCA CGCACCCATGTGAGAGGAGCATGCCCAGCCTGCAATTGTGCCCCTCTCAA CAGGTACCTCTCCCCCTCATACATCTGACAGAGATTAGTTTTGCTGCTTC AGCACGAGGAAGCCAGCGTTCTCCGTAGATAAGGAAAAGCAAGGCACCGC AACCTCACACAACAATGGCAACGACCACCGGCATCAGCGACCCTGCAATT AGGCATGAAGATCCCACGATGACTGCCGCCTCTGAGACGACGACGACAAC GACGACGACGACAACGACGACGACCGCGACGGAAGGCAGCAGCCCTGCAC CCGAGTCGGGCTCGGCGACAAAAAAAAAGCGGGGGGCTGGGGACGACTGG GCCAAGAGCAAGAACGACGTTGACAACGATGATTCAAGTGAGATCGCAGA AGAAGGCACTGTCTCGGGCGAGTTTCGACGTGCGGATCCCGAGACGCTGA GCAAGCGGAGGATAGTCAAGGCCCGTCGGCCACCTGGCATGGAAGGAGGA GATGGGTCACCTGCAGGATCGGCGACAGGTGTGGAGGATAAGTCTGTGAC CGCCAATCCCTTTGCAGCCCTTTCTTTAACGAGAGCCAAGACTGATGCTA TCGGGGGAGGTGGCGTGTTCGGGAGTGGGTTCCCCCAGACGAATGCTGCT TCCATCCTCGGGGTAAGTGGCGGGGGTGGGGGTTGGGGTAGCACGGGAGC GAAGGGAGTTGACATGGTGCGGCCAGGCACTGGACCAGGATTAGGCTCGG CGCCGGTTGGGTTTGCTGCGTATAAACTCAATCCGTTTCAGAGCGCGGCT CCGAGTGCGGGAACTGGGGCGTCGTCGTCGTCGTTTGTCTCGTCGCCTTC GAAGAGGAAGCCACCCAGTGAGTTGGCGGGGGCGTCCGAGGCCAGTTCTC AATCACAGTTTGGTAGGCCTGCTGCTTCGATCAATCAGGGGGGCGAGGAT GAAGAAGATGGTAGAGGTAGAGGGGGTAGTCCTGCCGGGGGAGTAGGGGA GGAGGATTTGGAAGCGGAGCCGAATGTGACGTTTGACGTGCCCAAAGTGC ATGGGTTAAAGGACGCATCTTACAAGCCCTTGACAGGCGAGGAGCTAGAG ATATGCGTGTTGCAATTGCGCTCAAAATTGTACCGCTTGACAGAGGTGAA GACTAAAGATGATGCGGGGGGAGGGGGAGGGGCGTCGTCCTCCTCATCGG CGCAGCCACGACGTGACTGGGTGGAGACCGGCGTGGGACAAGCCAAGGTA CTGAAACCACTGTCGAGGAATGACAATTTCTCGGCGCCTGCCCGGATAGT GATGCGGCGGGAGCCTGGGACGAGTGTCTTGATCAATACGTTGCTGAAGG AGCCGGTGGGGGTAGCCAAGCATGCTGACAAGGCGTTGCGGCTCACATGT TTGGATGAGAATGGAATGCCTTCTACGTTTTTGTTCCGGTTTAAGACAAC GGATGAGATGGAGCAAATGCTAGGGGAGATTGAGAGGCAACTGGCCATTG CCGCGGGACCAGGAAGGGGGGGTGGGATAAAGGAGGAAGCAGCCGTGGGG GAAGGGAAGAAGAAGGATAAGGCCAATGCCGTCTGAGAGGAAATGGTTTG AGATAGGCTGGTGATGTAAAAGAGACACAAAAAGAGTCATGAAAAAGGGA ATAGAGCGAGGAAAAGATTCATCAAAAGACTTGTAGTAAAGTTGAAAATG TGAGAAAGGAAACGAGATGATGTTTTAGCACAGCCAAATGCACAATTGCT TTGCACCAAATACACCCCAAAAAGACGTAGAAAGACGTCACAA back to topprotein sequence of jgi.p|Nanoce1779_2|6004 >mRNA_1426-protein ID=mRNA_1426-protein|Name=jgi.p|Nanoce1779_2|6004|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp MATTTGISDPAIRHEDPTMTAASETTTTTTTTTTTTTATEGSSPAPESGS ATKKKRGAGDDWAKSKNDVDNDDSSEIAEEGTVSGEFRRADPETLSKRRI VKARRPPGMEGGDGSPAGSATGVEDKSVTANPFAALSLTRAKTDAIGGGG VFGSGFPQTNAASILGVSGGGGGWGSTGAKGVDMVRPGTGPGLGSAPVGF AAYKLNPFQSAAPSAGTGASSSSFVSSPSKRKPPSELAGASEASSQSQFG RPAASINQGGEDEEDGRGRGGSPAGGVGEEDLEAEPNVTFDVPKVHGLKD ASYKPLTGEELEICVLQLRSKLYRLTEVKTKDDAGGGGGASSSSSAQPRR DWVETGVGQAKVLKPLSRNDNFSAPARIVMRREPGTSVLINTLLKEPVGV AKHADKALRLTCLDENGMPSTFLFRFKTTDEMEQMLGEIERQLAIAAGPG RGGGIKEEAAVGEGKKKDKANAV* back to topmRNA from alignment at scaffold_1:520950..522892+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1426 ID=mRNA_1426|Name=jgi.p|Nanoce1779_2|6004|organism=Nannochloropsis oceanica|type=mRNA|length=1943bp|location=Sequence derived from alignment at scaffold_1:520950..522892+ (Nannochloropsis oceanica) GAGCACAGTGTGTGTATGAAAGGGTTGGAGAGAGGGGAGGAATGGTGGGG
AGGTCGCCGGCGGCCCACTGACGGCCCGGGTTCGCCTAATGAATTCTTCC
ATGGTCTTGTTTTTCCCCCCACACACGTGCGTATACACACAATCGCACCA
CGCACCCATGTGAGAGGAGCATGCCCAGCCTGCAATTGTGCCCCTCTCAA
CAGGTACCTCTCCCCCTCATACATCTGACAGAGATTAGTTTTGCTGCTTC
AGCACGAGGAAGCCAGCGTTCTCCGTAGATAAGGAAAAGCAAGGCACCGC
AACCTCACACAACAATGGCAACGACCACCGGCATCAGCGACCCTGCAATT
AGGCATGAAGATCCCACGATGACTGCCGCCTCTGAGACGACGACGACAAC
GACGACGACGACAACGACGACGACCGCGACGGAAGGCAGCAGCCCTGCAC
CCGAGTCGGGCTCGGCGACAAAAAAAAAGCGGGGGGCTGGGGACGACTGG
GCCAAGAGCAAGAACGACGTTGACAACGATGATTCAAGTGAGATCGCAGA
AGAAGGCACTGTCTCGGGCGAGTTTCGACGTGCGGATCCCGAGACGCTGA
GCAAGCGGAGGATAGTCAAGGCCCGTCGGCCACCTGGCATGGAAGGAGGA
GATGGGTCACCTGCAGGATCGGCGACAGGTGTGGAGGATAAGTCTGTGAC
CGCCAATCCCTTTGCAGCCCTTTCTTTAACGAGAGCCAAGACTGATGCTA
TCGGGGGAGGTGGCGTGTTCGGGAGTGGGTTCCCCCAGACGAATGCTGCT
TCCATCCTCGGGGTAAGTGGCGGGGGTGGGGGTTGGGGTAGCACGGGAGC
GAAGGGAGTTGACATGGTGCGGCCAGGCACTGGACCAGGATTAGGCTCGG
CGCCGGTTGGGTTTGCTGCGTATAAACTCAATCCGTTTCAGAGCGCGGCT
CCGAGTGCGGGAACTGGGGCGTCGTCGTCGTCGTTTGTCTCGTCGCCTTC
GAAGAGGAAGCCACCCAGTGAGTTGGCGGGGGCGTCCGAGGCCAGTTCTC
AATCACAGTTTGGTAGGCCTGCTGCTTCGATCAATCAGGGGGGCGAGGAT
GAAGAAGATGGTAGAGGTAGAGGGGGTAGTCCTGCCGGGGGAGTAGGGGA
GGAGGATTTGGAAGCGGAGCCGAATGTGACGTTTGACGTGCCCAAAGTGC
ATGGGTTAAAGGACGCATCTTACAAGCCCTTGACAGGCGAGGAGCTAGAG
ATATGCGTGTTGCAATTGCGCTCAAAATTGTACCGCTTGACAGAGGTGAA
GACTAAAGATGATGCGGGGGGAGGGGGAGGGGCGTCGTCCTCCTCATCGG
CGCAGCCACGACGTGACTGGGTGGAGACCGGCGTGGGACAAGCCAAGGTA
CTGAAACCACTGTCGAGGAATGACAATTTCTCGGCGCCTGCCCGGATAGT
GATGCGGCGGGAGCCTGGGACGAGTGTCTTGATCAATACGTTGCTGAAGG
AGCCGGTGGGGGTAGCCAAGCATGCTGACAAGGCGTTGCGGCTCACATGT
TTGGATGAGAATGGAATGCCTTCTACGTTTTTGTTCCGGTTTAAGACAAC
GGATGAGATGGAGCAAATGCTAGGGGAGATTGAGAGGCAACTGGCCATTG
CCGCGGGACCAGGAAGGGGGGGTGGGATAAAGGAGGAAGCAGCCGTGGGG
GAAGGGAAGAAGAAGGATAAGGCCAATGCCGTCTGAGAGGAAATGGTTTG
AGATAGGCTGGTGATGTAAAAGAGACACAAAAAGAGTCATGAAAAAGGGA
ATAGAGCGAGGAAAAGATTCATCAAAAGACTTGTAGTAAAGTTGAAAATG
TGAGAAAGGAAACGAGATGATGTTTTAGCACAGCCAAATGCACAATTGCT
TTGCACCAAATACACCCCAAAAAGACGTAGAAAGACGTCACAA back to topCoding sequence (CDS) from alignment at scaffold_1:520950..522892+ >mRNA_1426 ID=mRNA_1426|Name=jgi.p|Nanoce1779_2|6004|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_1:520950..522892+ (Nannochloropsis oceanica) ATGGCAACGACCACCGGCATCAGCGACCCTGCAATTAGGCATGAAGATCC CACGATGACTGCCGCCTCTGAGACGACGACGACAACGACGACGACGACAA CGACGACGACCGCGACGGAAGGCAGCAGCCCTGCACCCGAGTCGGGCTCG GCGACAAAAAAAAAGCGGGGGGCTGGGGACGACTGGGCCAAGAGCAAGAA CGACGTTGACAACGATGATTCAAGTGAGATCGCAGAAGAAGGCACTGTCT CGGGCGAGTTTCGACGTGCGGATCCCGAGACGCTGAGCAAGCGGAGGATA GTCAAGGCCCGTCGGCCACCTGGCATGGAAGGAGGAGATGGGTCACCTGC AGGATCGGCGACAGGTGTGGAGGATAAGTCTGTGACCGCCAATCCCTTTG CAGCCCTTTCTTTAACGAGAGCCAAGACTGATGCTATCGGGGGAGGTGGC GTGTTCGGGAGTGGGTTCCCCCAGACGAATGCTGCTTCCATCCTCGGGGT AAGTGGCGGGGGTGGGGGTTGGGGTAGCACGGGAGCGAAGGGAGTTGACA TGGTGCGGCCAGGCACTGGACCAGGATTAGGCTCGGCGCCGGTTGGGTTT GCTGCGTATAAACTCAATCCGTTTCAGAGCGCGGCTCCGAGTGCGGGAAC TGGGGCGTCGTCGTCGTCGTTTGTCTCGTCGCCTTCGAAGAGGAAGCCAC CCAGTGAGTTGGCGGGGGCGTCCGAGGCCAGTTCTCAATCACAGTTTGGT AGGCCTGCTGCTTCGATCAATCAGGGGGGCGAGGATGAAGAAGATGGTAG AGGTAGAGGGGGTAGTCCTGCCGGGGGAGTAGGGGAGGAGGATTTGGAAG CGGAGCCGAATGTGACGTTTGACGTGCCCAAAGTGCATGGGTTAAAGGAC GCATCTTACAAGCCCTTGACAGGCGAGGAGCTAGAGATATGCGTGTTGCA ATTGCGCTCAAAATTGTACCGCTTGACAGAGGTGAAGACTAAAGATGATG CGGGGGGAGGGGGAGGGGCGTCGTCCTCCTCATCGGCGCAGCCACGACGT GACTGGGTGGAGACCGGCGTGGGACAAGCCAAGGTACTGAAACCACTGTC GAGGAATGACAATTTCTCGGCGCCTGCCCGGATAGTGATGCGGCGGGAGC CTGGGACGAGTGTCTTGATCAATACGTTGCTGAAGGAGCCGGTGGGGGTA GCCAAGCATGCTGACAAGGCGTTGCGGCTCACATGTTTGGATGAGAATGG AATGCCTTCTACGTTTTTGTTCCGGTTTAAGACAACGGATGAGATGGAGC AAATGCTAGGGGAGATTGAGAGGCAACTGGCCATTGCCGCGGGACCAGGA AGGGGGGGTGGGATAAAGGAGGAAGCAGCCGTGGGGGAAGGGAAGAAGAA GGATAAGGCCAATGCCGTCTGA back to top
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