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Properties
Property Name | Value |
TranscriptId | 571728 |
Track | FilteredModels2 |
ProteinId | 571642 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_1 | supercontig | scaffold_1:204608..206236 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1295 ID=mRNA_1295|Name=jgi.p|Nanoce1779_2|571642|organism=Nannochloropsis oceanica|type=mRNA|length=1501bp ACAGCACCATGAATAGGCCGGCGACATTCCGCATGCTGCCGCCCGAGTGC TACGACCATATTGTGGGATTCCTGCGCTACAAAGATGTAAGTACTCACCA AGACGTTGTAATGGGATTGCCAGGACAGCGAACGAGTGACGGAGGGCGGG GTCGTGACAAAGACCATTCCATGCAACTGTCTCCCCCCTTGCGCGGGAGC CACGTGTATTTGTGACTCACCTCGGTATTAACGTGGGTCCCCTTCCCGCA GTGCCAGTCGATCCCTTAGTTCTTGTCGGACGCCGCTTTCGGGGGAAGGA CCACTCCCTCCCTTTACTGATATGCAGACGTGCTAGAAGCCCTCCTTTCC TCACCACAACTCTTCTTCTCATATCCCCTTGGGCGCATGCCACTGACCCG TCCCACCCTTATCCTCTTCGGGGCGCAGACCACTTGAGTTGTATCGTTCC ATAGGCGACGTGCCTTTCGAAAGAGCGGCCTTCCTTCGCCGTTTGTCGCT GCTCCCTTCCCGACCCTCTCAGACCCTCTCAGACCCTCTTTTCCCCCCTC CCTCACTTCCCTCCCTCCATCTCTACTCTCCACCTCCCAAACAGCTCGTC CGCGTCTCCATGACAAGCGTGGACACTTGGATGGCCTACTTCCGGGTGCA GAGCCGTTTGGAAGAATTACGGGCCAAGAATGTGAGAAGTCGGAGACGGC GTCGCGCGCTGTTTGCCCAGCTCCGGGTATCCACGGGATTGAAAATTTTG AGCCTTGTTAATGTCCAGCATCCCTGCACCAGCGTCCTATTCCGGCAGGT CAGCGGTATGCATGGTCTTCAAGAACTCGACCTCTCTGCCAACGGGCTCA AGGGCCCCCTCCCCCTCTCCATCGGTGACGACCTGCCCCTCCTCCGTGTC CTCTCCCTCAGCAATAACGGGCTTACGGGCACCTTGCCACCGGGATGGGG CAAGCTCCACCGTCTCGAGGACCTCAAATTATCGTTCAATTCCTTACAAG GCAGCATCCCCGACTCCTGGGCCGGCATGATCTCCCTCCGGCACATCTCC CTCTCCTACAACCAACTCTCCGGGCCCGTCCCCTCCTTCTTCTCCACCCT CCGCGACCTTGAGACCCTGCTGTTGGGAGGGAACCGCTTTACTGGCGTTC TCCCTCCGTCTCTGGGGGCATTAAGTCACATCAATTCCCTCTACCTCTTC CAAAACGAACTCGAAGGCCCCATCCCTGACTCTCTCGGCTCGTGCGTCGC CCTCCAAAAGCTGCTGTTGTCTCACAACAAGCTCACGGGGAAGCTTCCTT CCTCCCTGGGTCGCCTCGAGAGCCTGAAAGAATTGAGTGTGAGTGGGAAC GAGCTCGAGGGAGAGCTACCGCACGCGTTGGAAAAACTGGAGAAACTGCA GACGCTTGATTTGGCCGATAATCGATTTGCGGCCGATGCACCAAGGAGCC GGCAGGTGATCCGGGTCATGCGGACGAGGGATTGTCAGATTTATATGTAG G back to topprotein sequence of jgi.p|Nanoce1779_2|571642 >mRNA_1295-protein ID=mRNA_1295-protein|Name=jgi.p|Nanoce1779_2|571642|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp MTSVDTWMAYFRVQSRLEELRAKNVRSRRRRRALFAQLRVSTGLKILSLV NVQHPCTSVLFRQVSGMHGLQELDLSANGLKGPLPLSIGDDLPLLRVLSL SNNGLTGTLPPGWGKLHRLEDLKLSFNSLQGSIPDSWAGMISLRHISLSY NQLSGPVPSFFSTLRDLETLLLGGNRFTGVLPPSLGALSHINSLYLFQNE LEGPIPDSLGSCVALQKLLLSHNKLTGKLPSSLGRLESLKELSVSGNELE GELPHALEKLEKLQTLDLADNRFAADAPRSRQVIRVMRTRDCQIYM* back to topmRNA from alignment at scaffold_1:204608..206236+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1295 ID=mRNA_1295|Name=jgi.p|Nanoce1779_2|571642|organism=Nannochloropsis oceanica|type=mRNA|length=1629bp|location=Sequence derived from alignment at scaffold_1:204608..206236+ (Nannochloropsis oceanica) ACAGCACCATGAATAGGCCGGCGACATTCCGCATGCTGCCGCCCGAGTGC
TACGACCATATTGTGGGATTCCTGCGCTACAAAGATGTAAGTACTCACCA
AGACGTTGTAATGGGATTGCCAGGACAGCGAACGAGTGACGGAGGGCGGG
GTCGTGACAAAGACCATTCCATGCAACTGTCTCCCCCCTTGCGCGGGAGC
CACGTGTATTTGTGACTCACCTCGGTATTAACGTGGGTCCCCTTCCCGCA
GTGCCAGTCGATCCCTTAGTTCTTGTCGGACGCCGCTTTCGGGGGAAGGA
CCACTCCCTCCCTTTACTGATATGCAGACGTGCTAGAAGCCCTCCTTTCC
TCACCACAACTCTTCTTCTCATATCCCCTTGGGCGCATGCCACTGACCCG
TCCCACCCTTATCCTCTTCGGGGCGCAGACCACTTGAGTTGTATCGTTCC
ATAGGCGACGTGCCTTTCGAAAGAGCGGCCTTCCTTCGCCGTTTGTCGCT
GCTCCCTTCCCGACCCTCTCAGACCCTCTCAGACCCTCTTTTCCCCCCTC
CCTCACTTCCCTCCCTCCATCTCTACTCTCCACCTCCCAAACAGCTCGTC
CGCGTCTCCATGACAAGCGTGGACACTTGGATGGCCTACTTCCGGGTGCA
GAGCCGTTTGGAAGAATTACGGGCCAAGAATGTGAGAAGTCGGAGACGGC
GTCGCGCGCTGTTTGCCCAGCTCCGGGTATCCACGGGATTGAAAATTTTG
AGCCTTGTTAATGTCCAGCATCCCTGCACCAGTACGTTTGAATGCTTGAA
AATAGTGAGGAAGGAGGGAAGAAGGGAATTTACACAGAAGTAAGAAAGAA
AAGCTCCACTTATCTTCCCCCTTCCCTCTACCCCCCCCCCCCCTCCCTCT
TCCAATTAGGCGTCCTATTCCGGCAGGTCAGCGGTATGCATGGTCTTCAA
GAACTCGACCTCTCTGCCAACGGGCTCAAGGGCCCCCTCCCCCTCTCCAT
CGGTGACGACCTGCCCCTCCTCCGTGTCCTCTCCCTCAGCAATAACGGGC
TTACGGGCACCTTGCCACCGGGATGGGGCAAGCTCCACCGTCTCGAGGAC
CTCAAATTATCGTTCAATTCCTTACAAGGCAGCATCCCCGACTCCTGGGC
CGGCATGATCTCCCTCCGGCACATCTCCCTCTCCTACAACCAACTCTCCG
GGCCCGTCCCCTCCTTCTTCTCCACCCTCCGCGACCTTGAGACCCTGCTG
TTGGGAGGGAACCGCTTTACTGGCGTTCTCCCTCCGTCTCTGGGGGCATT
AAGTCACATCAATTCCCTCTACCTCTTCCAAAACGAACTCGAAGGCCCCA
TCCCTGACTCTCTCGGCTCGTGCGTCGCCCTCCAAAAGCTGCTGTTGTCT
CACAACAAGCTCACGGGGAAGCTTCCTTCCTCCCTGGGTCGCCTCGAGAG
CCTGAAAGAATTGAGTGTGAGTGGGAACGAGCTCGAGGGAGAGCTACCGC
ACGCGTTGGAAAAACTGGAGAAACTGCAGACGCTTGATTTGGCCGATAAT
CGATTTGCGGCCGATGCACCAAGGAGCCGGCAGGTGATCCGGGTCATGCG
GACGAGGGATTGTCAGATTTATATGTAGG back to topCoding sequence (CDS) from alignment at scaffold_1:204608..206236+ >mRNA_1295 ID=mRNA_1295|Name=jgi.p|Nanoce1779_2|571642|organism=Nannochloropsis oceanica|type=CDS|length=1782bp|location=Sequence derived from alignment at scaffold_1:204608..206236+ (Nannochloropsis oceanica) ATGACAAGCGTGGACACTTGGATGGCCTACTTCCGGGTGCAGAGCCGTTT GGAAGAATTACGGGCCAAGAATGTGAGAAGTCGGAGACGGCGTCGCGCGC TGTTTGCCCAGCTCCGGGTATCCACGGGATTGAAAATTTTGAGCCTTGTT AATGTCCAGCATCCCTGCACCAGCGTCCTATTCCGGCAGGTCAGCGGTAT GCATGGTCTTCAAGAACTCGACCTCTCTGCCAACGGGCTCAAGGGCCCCC TCCCCCTCTCCATCGGTGACGACCTGCCCCTCCTCCGTGTCCTCTCCCTC AGCAATAACGGGCTTACGGGCACCTTGCCACCGGGATGGGGCAAGCTCCA CCGTCTCGAGGACCTCAAATTATCGTTCAATTCCTTACAAGGCAGCATCC CCGACTCCTGGGCCGGCATGATCTCCCTCCGGCACATCTCCCTCTCCTAC AACCAACTCTCCGGGCCCGTCCCCTCCTTCTTCTCCACCCTCCGCGACCT TGAGACCCTGCTGTTGGGAGGGAACCGCTTTACTGGCGTTCTCCCTCCGT CTCTGGGGGCATTAAGTCACATCAATTCCCTCTACCTCTTCCAAAACGAA CTCGAAGGCCCCATCCCTGACTCTCTCGGCTCGTGCGTCGCCCTCCAAAA GCTGCTGTTGTCTCACAACAAGCTCACGGGGAAGCTTCCTTCCTCCCTGG GTCGCCTCGAGAGCCTGAAAGAATTGAGTGTGAGTGGGAACGAGCTCGAG GGAGAGCTACCGCACGCGTTGGAAAAACTGGAGAAACTGCAGACGCTTGA TTTGGCCGATAATCGATTTGCGGCCGATGCACCAAGGAGCCGGCAGGTGA TCCGGGTCATGCGGACGAGGGATTGTCAGATTTATATGTAGATGACAAGC GTGGACACTTGGATGGCCTACTTCCGGGTGCAGAGCCGTTTGGAAGAATT ACGGGCCAAGAATGTGAGAAGTCGGAGACGGCGTCGCGCGCTGTTTGCCC AGCTCCGGGTATCCACGGGATTGAAAATTTTGAGCCTTGTTAATGTCCAG CATCCCTGCACCAGCGTCCTATTCCGGCAGGTCAGCGGTATGCATGGTCT TCAAGAACTCGACCTCTCTGCCAACGGGCTCAAGGGCCCCCTCCCCCTCT CCATCGGTGACGACCTGCCCCTCCTCCGTGTCCTCTCCCTCAGCAATAAC GGGCTTACGGGCACCTTGCCACCGGGATGGGGCAAGCTCCACCGTCTCGA GGACCTCAAATTATCGTTCAATTCCTTACAAGGCAGCATCCCCGACTCCT GGGCCGGCATGATCTCCCTCCGGCACATCTCCCTCTCCTACAACCAACTC TCCGGGCCCGTCCCCTCCTTCTTCTCCACCCTCCGCGACCTTGAGACCCT GCTGTTGGGAGGGAACCGCTTTACTGGCGTTCTCCCTCCGTCTCTGGGGG CATTAAGTCACATCAATTCCCTCTACCTCTTCCAAAACGAACTCGAAGGC CCCATCCCTGACTCTCTCGGCTCGTGCGTCGCCCTCCAAAAGCTGCTGTT GTCTCACAACAAGCTCACGGGGAAGCTTCCTTCCTCCCTGGGTCGCCTCG AGAGCCTGAAAGAATTGAGTGTGAGTGGGAACGAGCTCGAGGGAGAGCTA CCGCACGCGTTGGAAAAACTGGAGAAACTGCAGACGCTTGATTTGGCCGA TAATCGATTTGCGGCCGATGCACCAAGGAGCCGGCAGGTGATCCGGGTCA TGCGGACGAGGGATTGTCAGATTTATATGTAG back to top
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