jgi.p|Nanoce1779_2|20784, mRNA_4308 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|20784
Unique NamemRNA_4308
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length421
Alignment locationscaffold_10:259204..259624 +

Link to JBrowse

Properties
Property NameValue
TranscriptId20870
TrackFilteredModels2
ProteinId20784
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:259204..259624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|20784gene_4308Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|20784mRNA_4308-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4308CDS_4308Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4308 ID=mRNA_4308|Name=jgi.p|Nanoce1779_2|20784|organism=Nannochloropsis oceanica|type=mRNA|length=421bp
ACTCTGTGCTGTGGCACCAGACATACAAAACAACAGCGGTTTAATGATAC
CAATGCGTCATCCCAACGTCACGCGCTCATAATCGTTTCTTTCTCTCTTT
TTTGTTCCCTACCGTGTGCTCTCCCGACATGTTCAGACTGTGGATAGATC
TCCTTTCTCACCTGATTCGTCTCGTCCCTACCGCCCTATTATATGTACTG
GTAATGCCCAGAGGGAAAACGTTTGAAGAAGCATCGCGCCCACACATCGG
AAAGCGTACCACGTATGGTTTATATGTATGGCCCATTTCCTCTATTTCCC
TACCTCCATACCCACAACGACAGCCTCGAATCCATCCTGCGAAAAATCAG
TCAAATAGATGACTCCCTTCACTGCTCCTCTCAATTCATCTCCCCCTTTA
TCAAGGCCCCCCCTTTTCCCA
back to top

protein sequence of jgi.p|Nanoce1779_2|20784

>mRNA_4308-protein ID=mRNA_4308-protein|Name=jgi.p|Nanoce1779_2|20784|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MFRLWIDLLSHLIRLVPTALLYVLVMPRGKTFEEASRPHIGKRTTYGLYV
WPISSISLPPYPQRQPRIHPAKNQSNR*
back to top

mRNA from alignment at scaffold_10:259204..259624+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4308 ID=mRNA_4308|Name=jgi.p|Nanoce1779_2|20784|organism=Nannochloropsis oceanica|type=mRNA|length=421bp|location=Sequence derived from alignment at scaffold_10:259204..259624+ (Nannochloropsis oceanica)
ACTCTGTGCTGTGGCACCAGACATACAAAACAACAGCGGTTTAATGATAC
CAATGCGTCATCCCAACGTCACGCGCTCATAATCGTTTCTTTCTCTCTTT
TTTGTTCCCTACCGTGTGCTCTCCCGACATGTTCAGACTGTGGATAGATC
TCCTTTCTCACCTGATTCGTCTCGTCCCTACCGCCCTATTATATGTACTG
GTAATGCCCAGAGGGAAAACGTTTGAAGAAGCATCGCGCCCACACATCGG
AAAGCGTACCACGTATGGTTTATATGTATGGCCCATTTCCTCTATTTCCC
TACCTCCATACCCACAACGACAGCCTCGAATCCATCCTGCGAAAAATCAG
TCAAATAGATGACTCCCTTCACTGCTCCTCTCAATTCATCTCCCCCTTTA
TCAAGGCCCCCCCTTTTCCCA
back to top

Coding sequence (CDS) from alignment at scaffold_10:259204..259624+

>mRNA_4308 ID=mRNA_4308|Name=jgi.p|Nanoce1779_2|20784|organism=Nannochloropsis oceanica|type=CDS|length=234bp|location=Sequence derived from alignment at scaffold_10:259204..259624+ (Nannochloropsis oceanica)
ATGTTCAGACTGTGGATAGATCTCCTTTCTCACCTGATTCGTCTCGTCCC
TACCGCCCTATTATATGTACTGGTAATGCCCAGAGGGAAAACGTTTGAAG
AAGCATCGCGCCCACACATCGGAAAGCGTACCACGTATGGTTTATATGTA
TGGCCCATTTCCTCTATTTCCCTACCTCCATACCCACAACGACAGCCTCG
AATCCATCCTGCGAAAAATCAGTCAAATAGATGA
back to top
Synonyms
Publications