jgi.p|Nanoce1779_2|626863, mRNA_1536 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|626863
Unique Name	mRNA_1536
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1931
Alignment location	scaffold_1:889036..890966 -

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Properties


Property Name	Value
TranscriptId	626949
Track	FilteredModels2
ProteinId	626863

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:889036..890966 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626863	gene_1536	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626863	mRNA_1536-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1536	CDS_1536	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:889036..890966-
coding sequence from alignment at scaffold_1:889036..890966-

mRNA sequence

>mRNA_1536 ID=mRNA_1536|Name=jgi.p|Nanoce1779_2|626863|organism=Nannochloropsis oceanica|type=mRNA|length=1931bp
ATGAAGACCAACCTCGCCGTCGCCCTGGTCGTCCGCGTGGGTCCACCAAC
GTTGCCTGCCGGCCCCGCGGACGACCTACATCTCAGCAGCACCGACAGCA
AGCCCACCGCCAAGCCGAACAGCACCGACAGCAAGCCCACCGCCGAGCCG
AGCAGCACCGTCAATCCGCATATCGAGAAGGCATTCGCCAAGAACATGCC
GCACACGCTGCCCAACAAATCCGCGCTACTCTTGAAGCCGAACAAGCTCG
TGCACCACAAGAAGACCCCCCCAAGCCCCATGCACACCAGCACCCCGACC
CCTTACGGCGCCGCATCGCGCGCGCGCGCCTGGACTTCCGCCACCGTCCG
TGCCTCCCCTTGCTTGAGTTACCTCTGGTGACAAAAGCTGCTCCATCACC
TCGACTCGAACATGCGCATTCACGCAGCTCGCCTGGCCGGCCAACCTGAC
CACCAGCTCGAGTGGTTCGCCGACTTCCTCCTCGCCATTGGCGAAAGGCG
GCCCTCTGCCCCCCCAGACCCGCTGCACAACCCACATGCAACGCCACCGC
CTCCTTCTCACCACAATCATAGACTCATCCCGGTCTTCACGCCTCCCCCG
CCCGAGTTGGCCAACGACCTGAAATGCCTCATAAACCATATCTACGGCTC
CTTCGACCCCGCCAACCGAGACCACGACCACCTCATCGAACGCGCCATCC
TCGCCCCTACTAACAAAGACGTAGACGCCCTCAATGACGTGGCCGTTGCA
TCCTTTCCGGGAAAAGAGCACGTCTTCTGACGATGTTGCCGACCCAGCAC
ATGAATTAACTTACCCTGCCGAAGACATCCACTACTGCAAATCTCCCGGT
TTCGCCCACCACCGGCTCCACCTCAAGGTTGGCACTCCTTTTATCGTGCT
CCGCAATATAAGTCCTGCTCAAGGCCTTGCCGATGGCACACGCTTGGTGG
TCACGCACTTATCCCGTTCCATCATCCAGGCCAAGATCCTCACCGGCAGT
CATGTCGGCAATGTCAATGTCTTCGGCATTCCCCGTGCAACATGGATACC
GACCCTGAGGACCTCCGCGTTCCCATACAAATCCGTTAACGACAATTTTC
TCTGCGTCCCGCCTTCGCTTTGACCAGCAACAAGTCCCAGGGTCAGACCT
TCAAGAAAATTGCCCTCTACTTGCCCACCCCTGTCTTCGCCTACGGCCAG
CTCTACGTCGCTCTGTTCAGGGTTGAGAACCCCAACAACATCACCATTAT
GGTCACTTATTCTCCCATCGATGGCCAACTGCTATTTGCTTCAACGCCCA
AGACAAATACACACACCTCCATCACAACATCCACATTCACATCCACAGAT
GTCTCCCCGCTTCTCACCTGTTCTACACTTTCTGTTACAACTTCTCTCAC
TACTGGAACTTCTTTCGAGCACATGCCCGCAGAAATGCGGGATTTCCAGC
TAGTAATGTAAATGCCCGTAGGTCTCCTGCCCAAGTGCTATTTGGCAGAG
TATTTCAAAATTGAGGAGGAGGTGATGGAGTAGATCTCTCTCCGCCTCGT
TCAAACGAGAGATGAAGCCCCAGCGCTGTCTTTCCTCTTGTTTTGCAGAT
CCTGGAACCCGTGAAAGAGATGGAAAGACGCAAACGCTCACATTCATGGT
GCCCTCCGTCTCACACCCCCGCGCCCGCTTTTCACGAAGTCCATGTTCTT
TCCCATACTTTTTATTAGCATGAGCACATATGTTTAAGCAATGGTTGCGG
CTTGTCCTATCAGTCGCTGTGCACTTCCTCGGAAGGAGGGCAAGAGGTTG
ATCGGCGTCTCCTCAATGGACAACAGTTAAGTTTTGAACGAAAACAAATG
TTGCCCTTGGCGAGGAAAAGGAAGGAGAAATCTTGCTCAAAACAAATCCT
GCGAGAGAAATGAAAAAACTAAACGCTGAAT

protein sequence of jgi.p|Nanoce1779_2|626863

>mRNA_1536-protein ID=mRNA_1536-protein|Name=jgi.p|Nanoce1779_2|626863|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
EDQPRRRPGRPRGSTNVACRPRGRPTSQQHRQQAHRQAEQHRQQAHRRAE
QHRQSAYREGIRQEHAAHAAQQIRATLEAEQARAPQEDPPKPHAHQHPDP
LRRRIARARLDFRHRPCLPLLELPLVTKAAPSPRLEHAHSRSSPGRPT*

mRNA from alignment at scaffold_1:889036..890966-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1536 ID=mRNA_1536|Name=jgi.p|Nanoce1779_2|626863|organism=Nannochloropsis oceanica|type=mRNA|length=1931bp|location=Sequence derived from alignment at scaffold_1:889036..890966- (Nannochloropsis oceanica)
ATGAAGACCAACCTCGCCGTCGCCCTGGTCGTCCGCGTGGGTCCACCAAC
GTTGCCTGCCGGCCCCGCGGACGACCTACATCTCAGCAGCACCGACAGCA
AGCCCACCGCCAAGCCGAACAGCACCGACAGCAAGCCCACCGCCGAGCCG
AGCAGCACCGTCAATCCGCATATCGAGAAGGCATTCGCCAAGAACATGCC
GCACACGCTGCCCAACAAATCCGCGCTACTCTTGAAGCCGAACAAGCTCG
TGCACCACAAGAAGACCCCCCCAAGCCCCATGCACACCAGCACCCCGACC
CCTTACGGCGCCGCATCGCGCGCGCGCGCCTGGACTTCCGCCACCGTCCG
TGCCTCCCCTTGCTTGAGTTACCTCTGGTGACAAAAGCTGCTCCATCACC
TCGACTCGAACATGCGCATTCACGCAGCTCGCCTGGCCGGCCAACCTGAC
CACCAGCTCGAGTGGTTCGCCGACTTCCTCCTCGCCATTGGCGAAAGGCG
GCCCTCTGCCCCCCCAGACCCGCTGCACAACCCACATGCAACGCCACCGC
CTCCTTCTCACCACAATCATAGACTCATCCCGGTCTTCACGCCTCCCCCG
CCCGAGTTGGCCAACGACCTGAAATGCCTCATAAACCATATCTACGGCTC
CTTCGACCCCGCCAACCGAGACCACGACCACCTCATCGAACGCGCCATCC
TCGCCCCTACTAACAAAGACGTAGACGCCCTCAATGACGTGGCCGTTGCA
TCCTTTCCGGGAAAAGAGCACGTCTTCTGACGATGTTGCCGACCCAGCAC
ATGAATTAACTTACCCTGCCGAAGACATCCACTACTGCAAATCTCCCGGT
TTCGCCCACCACCGGCTCCACCTCAAGGTTGGCACTCCTTTTATCGTGCT
CCGCAATATAAGTCCTGCTCAAGGCCTTGCCGATGGCACACGCTTGGTGG
TCACGCACTTATCCCGTTCCATCATCCAGGCCAAGATCCTCACCGGCAGT
CATGTCGGCAATGTCAATGTCTTCGGCATTCCCCGTGCAACATGGATACC
GACCCTGAGGACCTCCGCGTTCCCATACAAATCCGTTAACGACAATTTTC
TCTGCGTCCCGCCTTCGCTTTGACCAGCAACAAGTCCCAGGGTCAGACCT
TCAAGAAAATTGCCCTCTACTTGCCCACCCCTGTCTTCGCCTACGGCCAG
CTCTACGTCGCTCTGTTCAGGGTTGAGAACCCCAACAACATCACCATTAT
GGTCACTTATTCTCCCATCGATGGCCAACTGCTATTTGCTTCAACGCCCA
AGACAAATACACACACCTCCATCACAACATCCACATTCACATCCACAGAT
GTCTCCCCGCTTCTCACCTGTTCTACACTTTCTGTTACAACTTCTCTCAC
TACTGGAACTTCTTTCGAGCACATGCCCGCAGAAATGCGGGATTTCCAGC
TAGTAATGTAAATGCCCGTAGGTCTCCTGCCCAAGTGCTATTTGGCAGAG
TATTTCAAAATTGAGGAGGAGGTGATGGAGTAGATCTCTCTCCGCCTCGT
TCAAACGAGAGATGAAGCCCCAGCGCTGTCTTTCCTCTTGTTTTGCAGAT
CCTGGAACCCGTGAAAGAGATGGAAAGACGCAAACGCTCACATTCATGGT
GCCCTCCGTCTCACACCCCCGCGCCCGCTTTTCACGAAGTCCATGTTCTT
TCCCATACTTTTTATTAGCATGAGCACATATGTTTAAGCAATGGTTGCGG
CTTGTCCTATCAGTCGCTGTGCACTTCCTCGGAAGGAGGGCAAGAGGTTG
ATCGGCGTCTCCTCAATGGACAACAGTTAAGTTTTGAACGAAAACAAATG
TTGCCCTTGGCGAGGAAAAGGAAGGAGAAATCTTGCTCAAAACAAATCCT
GCGAGAGAAATGAAAAAACTAAACGCTGAAT

Coding sequence (CDS) from alignment at scaffold_1:889036..890966-

>mRNA_1536 ID=mRNA_1536|Name=jgi.p|Nanoce1779_2|626863|organism=Nannochloropsis oceanica|type=CDS|length=447bp|location=Sequence derived from alignment at scaffold_1:889036..890966- (Nannochloropsis oceanica)
GAAGACCAACCTCGCCGTCGCCCTGGTCGTCCGCGTGGGTCCACCAACGT
TGCCTGCCGGCCCCGCGGACGACCTACATCTCAGCAGCACCGACAGCAAG
CCCACCGCCAAGCCGAACAGCACCGACAGCAAGCCCACCGCCGAGCCGAG
CAGCACCGTCAATCCGCATATCGAGAAGGCATTCGCCAAGAACATGCCGC
ACACGCTGCCCAACAAATCCGCGCTACTCTTGAAGCCGAACAAGCTCGTG
CACCACAAGAAGACCCCCCCAAGCCCCATGCACACCAGCACCCCGACCCC
TTACGGCGCCGCATCGCGCGCGCGCGCCTGGACTTCCGCCACCGTCCGTG
CCTCCCCTTGCTTGAGTTACCTCTGGTGACAAAAGCTGCTCCATCACCTC
GACTCGAACATGCGCATTCACGCAGCTCGCCTGGCCGGCCAACCTGA

Synonyms

Publications