jgi.p|Nanoce1779_2|24259, mRNA_4452 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|24259
Unique NamemRNA_4452
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1178
Alignment locationscaffold_10:632229..633406 -

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Properties
Property NameValue
TranscriptId24345
TrackFilteredModels2
ProteinId24259
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:632229..633406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|24259gene_4452Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|24259mRNA_4452-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4452CDS_4452Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4452 ID=mRNA_4452|Name=jgi.p|Nanoce1779_2|24259|organism=Nannochloropsis oceanica|type=mRNA|length=1178bp
GGGAAAGAGTGGGGGCGTCGGGGCATGGCCAGGATTTGTTAAATGAGGAG
GAGGACGATGAAATTTTTTTGGATGCACACGGTGACGACGCTATGTTCCG
GCCCTTGCGGCGGGGGATGACGGTGTTGTCGGCTGAGACGAGCGGTCCTC
AACCGGTGCCTCTTTCCAAGCATGCCTCTGACCCTCTACCTCATCACAAC
GAGCACCACTTCCACAGCCAGCCCCAGCACACCTCTTCTCATTTGTCTAG
TTTGAGTAGCATGGCGTCGCATCAGACAGGCGTGTCGTGGGGGGGTGGAA
GGATTTCTGAATGCCTGGGGAACCAAAACCGCAGCGCCTCGCAATTCTAC
AACACAGTGCAGCATCAAGAGCGGCCTAAGCGGGAGCAAGAGGAGCCGCA
CCAGCAGCACCGTGAAGAACAACAGCAACATCGCCTTCCAGGCAACAATA
GCTTGGACGGGAGCAGCAGCCACGGAGGCGCCATGGACCAAGACCTCCCT
ACTGTTCAGCTGACCCAGGCGCAGCTCTTCCTCTTGCAGGGGGGCACTGG
CAGTGGCATCGGTTTATTTAAAGATATACAGCAGGAGCAGCAGCACATGT
GCAACCAGATTTCGCCAGACGGCGTGACAGCAGCGGAGGAGAGCGCAGAG
AGAGTCGCTACTGAGCTGTACGGTTCGAGTCCCAGTCCGGAGCCGCACCT
CCTTGGCCATTCCCGTCACAGCCCAACGCAACGTGCACAGCAGCAGCAGC
AGCAGCAGAAAAGGCAACAAGAACGCCAGCAAGAAGATCAGCAACAAGAA
CAAGGACATCAACAGCAGCAACAGCAGCAACAGCAGCAGGGGATGGTGCT
GCCCCTGCCACACCTGCCTGGGATGGTGCCGTCGCTTGTCCGCACCGTGA
GCAGCAGCGCCATGTTGGGTGCCCGCCCCACAACCATATCCCAAGGAAAG
GACGAAGGGGGACGTGGAGGGGCGTTGAGTCACAGCAATAGCAGCACCGA
CCTGGATATGTCTTGTCATGGCCCGGCGGATCCGAATGGGTATGGTGGAT
TGCATTGGACGCCGGCGCCATTGGCTTCTTTTTTGGGGGTTTCCTCTTGG
GGATCAAGGCGTGGCTCAAGGAAGGAGGAGAGATCTAAAGATTAGAGACT
GCTCAATCTTCTGGGAGTCAGTCGCCGG
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protein sequence of jgi.p|Nanoce1779_2|24259

>mRNA_4452-protein ID=mRNA_4452-protein|Name=jgi.p|Nanoce1779_2|24259|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MFRPLRRGMTVLSAETSGPQPVPLSKHASDPLPHHNEHHFHSQPQHTSSH
LSSLSSMASHQTGVSWGGGRISECLGNQNRSASQFYNTVQHQERPKREQE
EPHQQHREEQQQHRLPGNNSLDGSSSHGGAMDQDLPTVQLTQAQLFLLQG
GTGSGIGLFKDIQQEQQHMCNQISPDGVTAAEESAERVATELYGSSPSPE
PHLLGHSRHSPTQRAQQQQQQQKRQQERQQEDQQQEQGHQQQQQQQQQQG
MVLPLPHLPGMVPSLVRTVSSSAMLGARPTTISQGKDEGGRGGALSHSNS
STDLDMSCHGPADPNGYGGLHWTPAPLASFLGVSSWGSRRGSRKEERSKD
*
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mRNA from alignment at scaffold_10:632229..633406-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4452 ID=mRNA_4452|Name=jgi.p|Nanoce1779_2|24259|organism=Nannochloropsis oceanica|type=mRNA|length=1178bp|location=Sequence derived from alignment at scaffold_10:632229..633406- (Nannochloropsis oceanica)
GGGAAAGAGTGGGGGCGTCGGGGCATGGCCAGGATTTGTTAAATGAGGAG
GAGGACGATGAAATTTTTTTGGATGCACACGGTGACGACGCTATGTTCCG
GCCCTTGCGGCGGGGGATGACGGTGTTGTCGGCTGAGACGAGCGGTCCTC
AACCGGTGCCTCTTTCCAAGCATGCCTCTGACCCTCTACCTCATCACAAC
GAGCACCACTTCCACAGCCAGCCCCAGCACACCTCTTCTCATTTGTCTAG
TTTGAGTAGCATGGCGTCGCATCAGACAGGCGTGTCGTGGGGGGGTGGAA
GGATTTCTGAATGCCTGGGGAACCAAAACCGCAGCGCCTCGCAATTCTAC
AACACAGTGCAGCATCAAGAGCGGCCTAAGCGGGAGCAAGAGGAGCCGCA
CCAGCAGCACCGTGAAGAACAACAGCAACATCGCCTTCCAGGCAACAATA
GCTTGGACGGGAGCAGCAGCCACGGAGGCGCCATGGACCAAGACCTCCCT
ACTGTTCAGCTGACCCAGGCGCAGCTCTTCCTCTTGCAGGGGGGCACTGG
CAGTGGCATCGGTTTATTTAAAGATATACAGCAGGAGCAGCAGCACATGT
GCAACCAGATTTCGCCAGACGGCGTGACAGCAGCGGAGGAGAGCGCAGAG
AGAGTCGCTACTGAGCTGTACGGTTCGAGTCCCAGTCCGGAGCCGCACCT
CCTTGGCCATTCCCGTCACAGCCCAACGCAACGTGCACAGCAGCAGCAGC
AGCAGCAGAAAAGGCAACAAGAACGCCAGCAAGAAGATCAGCAACAAGAA
CAAGGACATCAACAGCAGCAACAGCAGCAACAGCAGCAGGGGATGGTGCT
GCCCCTGCCACACCTGCCTGGGATGGTGCCGTCGCTTGTCCGCACCGTGA
GCAGCAGCGCCATGTTGGGTGCCCGCCCCACAACCATATCCCAAGGAAAG
GACGAAGGGGGACGTGGAGGGGCGTTGAGTCACAGCAATAGCAGCACCGA
CCTGGATATGTCTTGTCATGGCCCGGCGGATCCGAATGGGTATGGTGGAT
TGCATTGGACGCCGGCGCCATTGGCTTCTTTTTTGGGGGTTTCCTCTTGG
GGATCAAGGCGTGGCTCAAGGAAGGAGGAGAGATCTAAAGATTAGAGACT
GCTCAATCTTCTGGGAGTCAGTCGCCGG
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Coding sequence (CDS) from alignment at scaffold_10:632229..633406-

>mRNA_4452 ID=mRNA_4452|Name=jgi.p|Nanoce1779_2|24259|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at scaffold_10:632229..633406- (Nannochloropsis oceanica)
ATGTTCCGGCCCTTGCGGCGGGGGATGACGGTGTTGTCGGCTGAGACGAG
CGGTCCTCAACCGGTGCCTCTTTCCAAGCATGCCTCTGACCCTCTACCTC
ATCACAACGAGCACCACTTCCACAGCCAGCCCCAGCACACCTCTTCTCAT
TTGTCTAGTTTGAGTAGCATGGCGTCGCATCAGACAGGCGTGTCGTGGGG
GGGTGGAAGGATTTCTGAATGCCTGGGGAACCAAAACCGCAGCGCCTCGC
AATTCTACAACACAGTGCAGCATCAAGAGCGGCCTAAGCGGGAGCAAGAG
GAGCCGCACCAGCAGCACCGTGAAGAACAACAGCAACATCGCCTTCCAGG
CAACAATAGCTTGGACGGGAGCAGCAGCCACGGAGGCGCCATGGACCAAG
ACCTCCCTACTGTTCAGCTGACCCAGGCGCAGCTCTTCCTCTTGCAGGGG
GGCACTGGCAGTGGCATCGGTTTATTTAAAGATATACAGCAGGAGCAGCA
GCACATGTGCAACCAGATTTCGCCAGACGGCGTGACAGCAGCGGAGGAGA
GCGCAGAGAGAGTCGCTACTGAGCTGTACGGTTCGAGTCCCAGTCCGGAG
CCGCACCTCCTTGGCCATTCCCGTCACAGCCCAACGCAACGTGCACAGCA
GCAGCAGCAGCAGCAGAAAAGGCAACAAGAACGCCAGCAAGAAGATCAGC
AACAAGAACAAGGACATCAACAGCAGCAACAGCAGCAACAGCAGCAGGGG
ATGGTGCTGCCCCTGCCACACCTGCCTGGGATGGTGCCGTCGCTTGTCCG
CACCGTGAGCAGCAGCGCCATGTTGGGTGCCCGCCCCACAACCATATCCC
AAGGAAAGGACGAAGGGGGACGTGGAGGGGCGTTGAGTCACAGCAATAGC
AGCACCGACCTGGATATGTCTTGTCATGGCCCGGCGGATCCGAATGGGTA
TGGTGGATTGCATTGGACGCCGGCGCCATTGGCTTCTTTTTTGGGGGTTT
CCTCTTGGGGATCAAGGCGTGGCTCAAGGAAGGAGGAGAGATCTAAAGAT
TAG
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Synonyms
Publications