jgi.p|Nanoce1779_2|588571, mRNA_4271 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588571
Unique NamemRNA_4271
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1848
Alignment locationscaffold_10:157687..159534 -

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Properties
Property NameValue
TranscriptId588657
TrackFilteredModels2
ProteinId588571
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:157687..159534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588571gene_4271Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588571mRNA_4271-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4271CDS_4271Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4271 ID=mRNA_4271|Name=jgi.p|Nanoce1779_2|588571|organism=Nannochloropsis oceanica|type=mRNA|length=1848bp
CAGGACCCGCGACTCATCGCTTCCTTGACGATAATGAAGCGGAAAAGAGC
AATGAGAGCAATAATGGTGCTTTTTGTAGCCTTTCCCACCATCTCAGTCG
CCGCGGCCGCAGAGGACCAGCACTATCAACACCCATCGCACGCGCACGAC
GACGACAATACTGTGCTTTCCTCTTTGCTAGGTCCTATTCCTGGGAAGGA
ATCTTTCTTCAAAGAGTTCTGGCAGGCGAAACCGGCCGTCATGCGCCGAC
ACAACCCGACTTTTTACCGACCCATTATGCAGGAAGGCGATCTGGACGCT
ATCTTGGTGCACAGCAGGACCGCATCTCTCATGGACACTTTGACCGGAGA
CGCAGACCATCCTCAGAACAAACATAATGACGAAGCATGGAAACTTGTCA
AGCGCATCAGAGGTGAAAATGGAGAGTTTTGGTCCAGCAGCCCCAACGCC
TCGACACGCACACAAATGCTAGGCCTGTCCCCTGACGCGACCGATGTGGA
AGTGGCGCGCGCCGCATTTGTCCAGGGGTATTCGTTGGTGGTGAACCATC
TCGAGGACAAATGGCACGGTACGGCTCAACTTGCATTGGTATTTGAGGAA
GAGCTTGGCTATCGCACGTCGACCAACTGCTACTTCACCCCTGCCCGAAG
TCAAGCATTTGAATCTCATTTTGATTGGATGGACGCGTTTGTCCTCCAGG
TGGAAGGGTCCAAGCGCTGGCGGCTATACGATGCCTTGGTAGACCAGCCC
CGGCCAGACATGCAATTTAAGCCGATGACACTGGAGGTTGGAGAGCCTTT
TATTGACTTTGTCCTGGAAGCTGGCGATCTGTTGTATTTGCCGTCGGGTT
TGATCCACGAGGCCCTCACCGAGATGGAGGACGGGTCGGGGTCCTCTTCC
CTACATCTGACGGTTGGCGTGGAGACTACTGTAATAGGATCGTGGGAATC
TTTGTTGTTGGAAGTGTTGGTGGTGGTTACGGCTGCTGCCAGCGAGGGCA
ACCACGATCTTCCTTCGTCTGGGGCGGGCTTGAGGGATTTGCGGTGCCCG
AGTGGGGCAGCAGGTGAGAGGGATGGAGAGGGCAAGGAGCACGAGATGGA
GAGTGCATCGGCCATGATGTCGGTTTTCATGTCAGCCATTATGACTGAGG
AGGGGCTGCGACTAGGCGATATGGTGGCTCTCACGCTGACACACCTGGCC
ACGCATGAAAGGGTGTTGCGTCGGCCGGTTCCCCTAACGCCGTTGATGAA
GCGAACCAAGAGTAGGCGCCGTTTGGGTCAGCTTAAAGAGTTGGTAACTC
TGGTTAAGGAGAAATCAGATATCCAGGGCGCTTGGGAATGGTTTATGCAG
AAACATAAGGGCACCGTGCCACGAAGTCTTGCTGTCTTCGGGAAGAATTT
CGGGGGCGCCGACCGGAAGGAGGCAGCTGGAAAAGAGATGGAGCGACGTC
TTGCCACCGCCGCAGCGGCAGGAACGGTGTTATCGGAAGAAGCTAAGCAG
GGGGTTCACGATGCTTTACTGTGTTTGGAAAAAGCCTTAGTGGACACGGT
GCAAGCGAAGGCTGTCTTGAAGCATTTTGATAGTGTGTGTCAGCAGGATT
TGGCTACATATCAGCAGCAGCGGAAAGGTATCTTGGAGCAAGGTGTGTGG
CAAGCAGACATTGCTGCGGTGGATGGACAGGTGGATGGACCGCAAGTGTA
TGGTGTGGGTTCACATGCCACTACGTTTGCTGGTGTGTCGAGTGTGTCGT
AGCGTGGGAGGTTACGAGGGAGGAAAGACGGCATCTTTGAATATATTCCA
AAGCTAGAAAAAGTGCGAATTTTAAACATCCAGAGCAGCAATGGACAT
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protein sequence of jgi.p|Nanoce1779_2|588571

>mRNA_4271-protein ID=mRNA_4271-protein|Name=jgi.p|Nanoce1779_2|588571|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MKRKRAMRAIMVLFVAFPTISVAAAAEDQHYQHPSHAHDDDNTVLSSLLG
PIPGKESFFKEFWQAKPAVMRRHNPTFYRPIMQEGDLDAILVHSRTASLM
DTLTGDADHPQNKHNDEAWKLVKRIRGENGEFWSSSPNASTRTQMLGLSP
DATDVEVARAAFVQGYSLVVNHLEDKWHGTAQLALVFEEELGYRTSTNCY
FTPARSQAFESHFDWMDAFVLQVEGSKRWRLYDALVDQPRPDMQFKPMTL
EVGEPFIDFVLEAGDLLYLPSGLIHEALTEMEDGSGSSSLHLTVGVETTV
IGSWESLLLEVLVVVTAAASEGNHDLPSSGAGLRDLRCPSGAAGERDGEG
KEHEMESASAMMSVFMSAIMTEEGLRLGDMVALTLTHLATHERVLRRPVP
LTPLMKRTKSRRRLGQLKELVTLVKEKSDIQGAWEWFMQKHKGTVPRSLA
VFGKNFGGADRKEAAGKEMERRLATAAAAGTVLSEEAKQGVHDALLCLEK
ALVDTVQAKAVLKHFDSVCQQDLATYQQQRKGILEQGVWQADIAAVDGQV
DGPQVYGVGSHATTFAGVSSVS*
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mRNA from alignment at scaffold_10:157687..159534-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4271 ID=mRNA_4271|Name=jgi.p|Nanoce1779_2|588571|organism=Nannochloropsis oceanica|type=mRNA|length=1848bp|location=Sequence derived from alignment at scaffold_10:157687..159534- (Nannochloropsis oceanica)
CAGGACCCGCGACTCATCGCTTCCTTGACGATAATGAAGCGGAAAAGAGC
AATGAGAGCAATAATGGTGCTTTTTGTAGCCTTTCCCACCATCTCAGTCG
CCGCGGCCGCAGAGGACCAGCACTATCAACACCCATCGCACGCGCACGAC
GACGACAATACTGTGCTTTCCTCTTTGCTAGGTCCTATTCCTGGGAAGGA
ATCTTTCTTCAAAGAGTTCTGGCAGGCGAAACCGGCCGTCATGCGCCGAC
ACAACCCGACTTTTTACCGACCCATTATGCAGGAAGGCGATCTGGACGCT
ATCTTGGTGCACAGCAGGACCGCATCTCTCATGGACACTTTGACCGGAGA
CGCAGACCATCCTCAGAACAAACATAATGACGAAGCATGGAAACTTGTCA
AGCGCATCAGAGGTGAAAATGGAGAGTTTTGGTCCAGCAGCCCCAACGCC
TCGACACGCACACAAATGCTAGGCCTGTCCCCTGACGCGACCGATGTGGA
AGTGGCGCGCGCCGCATTTGTCCAGGGGTATTCGTTGGTGGTGAACCATC
TCGAGGACAAATGGCACGGTACGGCTCAACTTGCATTGGTATTTGAGGAA
GAGCTTGGCTATCGCACGTCGACCAACTGCTACTTCACCCCTGCCCGAAG
TCAAGCATTTGAATCTCATTTTGATTGGATGGACGCGTTTGTCCTCCAGG
TGGAAGGGTCCAAGCGCTGGCGGCTATACGATGCCTTGGTAGACCAGCCC
CGGCCAGACATGCAATTTAAGCCGATGACACTGGAGGTTGGAGAGCCTTT
TATTGACTTTGTCCTGGAAGCTGGCGATCTGTTGTATTTGCCGTCGGGTT
TGATCCACGAGGCCCTCACCGAGATGGAGGACGGGTCGGGGTCCTCTTCC
CTACATCTGACGGTTGGCGTGGAGACTACTGTAATAGGATCGTGGGAATC
TTTGTTGTTGGAAGTGTTGGTGGTGGTTACGGCTGCTGCCAGCGAGGGCA
ACCACGATCTTCCTTCGTCTGGGGCGGGCTTGAGGGATTTGCGGTGCCCG
AGTGGGGCAGCAGGTGAGAGGGATGGAGAGGGCAAGGAGCACGAGATGGA
GAGTGCATCGGCCATGATGTCGGTTTTCATGTCAGCCATTATGACTGAGG
AGGGGCTGCGACTAGGCGATATGGTGGCTCTCACGCTGACACACCTGGCC
ACGCATGAAAGGGTGTTGCGTCGGCCGGTTCCCCTAACGCCGTTGATGAA
GCGAACCAAGAGTAGGCGCCGTTTGGGTCAGCTTAAAGAGTTGGTAACTC
TGGTTAAGGAGAAATCAGATATCCAGGGCGCTTGGGAATGGTTTATGCAG
AAACATAAGGGCACCGTGCCACGAAGTCTTGCTGTCTTCGGGAAGAATTT
CGGGGGCGCCGACCGGAAGGAGGCAGCTGGAAAAGAGATGGAGCGACGTC
TTGCCACCGCCGCAGCGGCAGGAACGGTGTTATCGGAAGAAGCTAAGCAG
GGGGTTCACGATGCTTTACTGTGTTTGGAAAAAGCCTTAGTGGACACGGT
GCAAGCGAAGGCTGTCTTGAAGCATTTTGATAGTGTGTGTCAGCAGGATT
TGGCTACATATCAGCAGCAGCGGAAAGGTATCTTGGAGCAAGGTGTGTGG
CAAGCAGACATTGCTGCGGTGGATGGACAGGTGGATGGACCGCAAGTGTA
TGGTGTGGGTTCACATGCCACTACGTTTGCTGGTGTGTCGAGTGTGTCGT
AGCGTGGGAGGTTACGAGGGAGGAAAGACGGCATCTTTGAATATATTCCA
AAGCTAGAAAAAGTGCGAATTTTAAACATCCAGAGCAGCAATGGACAT
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Coding sequence (CDS) from alignment at scaffold_10:157687..159534-

>mRNA_4271 ID=mRNA_4271|Name=jgi.p|Nanoce1779_2|588571|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at scaffold_10:157687..159534- (Nannochloropsis oceanica)
ATGAAGCGGAAAAGAGCAATGAGAGCAATAATGGTGCTTTTTGTAGCCTT
TCCCACCATCTCAGTCGCCGCGGCCGCAGAGGACCAGCACTATCAACACC
CATCGCACGCGCACGACGACGACAATACTGTGCTTTCCTCTTTGCTAGGT
CCTATTCCTGGGAAGGAATCTTTCTTCAAAGAGTTCTGGCAGGCGAAACC
GGCCGTCATGCGCCGACACAACCCGACTTTTTACCGACCCATTATGCAGG
AAGGCGATCTGGACGCTATCTTGGTGCACAGCAGGACCGCATCTCTCATG
GACACTTTGACCGGAGACGCAGACCATCCTCAGAACAAACATAATGACGA
AGCATGGAAACTTGTCAAGCGCATCAGAGGTGAAAATGGAGAGTTTTGGT
CCAGCAGCCCCAACGCCTCGACACGCACACAAATGCTAGGCCTGTCCCCT
GACGCGACCGATGTGGAAGTGGCGCGCGCCGCATTTGTCCAGGGGTATTC
GTTGGTGGTGAACCATCTCGAGGACAAATGGCACGGTACGGCTCAACTTG
CATTGGTATTTGAGGAAGAGCTTGGCTATCGCACGTCGACCAACTGCTAC
TTCACCCCTGCCCGAAGTCAAGCATTTGAATCTCATTTTGATTGGATGGA
CGCGTTTGTCCTCCAGGTGGAAGGGTCCAAGCGCTGGCGGCTATACGATG
CCTTGGTAGACCAGCCCCGGCCAGACATGCAATTTAAGCCGATGACACTG
GAGGTTGGAGAGCCTTTTATTGACTTTGTCCTGGAAGCTGGCGATCTGTT
GTATTTGCCGTCGGGTTTGATCCACGAGGCCCTCACCGAGATGGAGGACG
GGTCGGGGTCCTCTTCCCTACATCTGACGGTTGGCGTGGAGACTACTGTA
ATAGGATCGTGGGAATCTTTGTTGTTGGAAGTGTTGGTGGTGGTTACGGC
TGCTGCCAGCGAGGGCAACCACGATCTTCCTTCGTCTGGGGCGGGCTTGA
GGGATTTGCGGTGCCCGAGTGGGGCAGCAGGTGAGAGGGATGGAGAGGGC
AAGGAGCACGAGATGGAGAGTGCATCGGCCATGATGTCGGTTTTCATGTC
AGCCATTATGACTGAGGAGGGGCTGCGACTAGGCGATATGGTGGCTCTCA
CGCTGACACACCTGGCCACGCATGAAAGGGTGTTGCGTCGGCCGGTTCCC
CTAACGCCGTTGATGAAGCGAACCAAGAGTAGGCGCCGTTTGGGTCAGCT
TAAAGAGTTGGTAACTCTGGTTAAGGAGAAATCAGATATCCAGGGCGCTT
GGGAATGGTTTATGCAGAAACATAAGGGCACCGTGCCACGAAGTCTTGCT
GTCTTCGGGAAGAATTTCGGGGGCGCCGACCGGAAGGAGGCAGCTGGAAA
AGAGATGGAGCGACGTCTTGCCACCGCCGCAGCGGCAGGAACGGTGTTAT
CGGAAGAAGCTAAGCAGGGGGTTCACGATGCTTTACTGTGTTTGGAAAAA
GCCTTAGTGGACACGGTGCAAGCGAAGGCTGTCTTGAAGCATTTTGATAG
TGTGTGTCAGCAGGATTTGGCTACATATCAGCAGCAGCGGAAAGGTATCT
TGGAGCAAGGTGTGTGGCAAGCAGACATTGCTGCGGTGGATGGACAGGTG
GATGGACCGCAAGTGTATGGTGTGGGTTCACATGCCACTACGTTTGCTGG
TGTGTCGAGTGTGTCGTAG
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Synonyms
Publications