jgi.p|Nanoce1779_2|555688, mRNA_5813 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|555688
Unique NamemRNA_5813
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1176
Alignment locationscaffold_11:630013..631224 -

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Properties
Property NameValue
TranscriptId555774
TrackFilteredModels2
ProteinId555688
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:630013..631224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555688gene_5813Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555688mRNA_5813-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5813CDS_5813Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5813 ID=mRNA_5813|Name=jgi.p|Nanoce1779_2|555688|organism=Nannochloropsis oceanica|type=mRNA|length=1176bp
ATGGCGTTGCAGGGCTCCACGGCCGACGCCCTGTTCGTTGACAACGTGCA
AAATGTCCATGTCAAGGTCCACCCCGTTGTTGTCTTCGGCATCCTCGACC
ACTACAATCGTCGCCCTGAACCAGGGCCTGTCCGCGTTATCGGTACGCTG
CTCGGAACGGTGGTGGGAAATGTGGTGGAGATTCACAATGCTTTTGGGGT
GCCGCATGCAGAGAAGGAAAATGAGGTTGCTTTGGGGCAGGACTATCATC
GCGCGATGTACTCGCATTTCACGCGGATCAACGACAAGGAGCGGATTGTG
GGCTGGTATGCGACTACCTTGGAAGGGGGACGGGCCCTGAATTCTAACAG
CATCATTATCCATGGGTTCTATGCGGGGAATGCTGATCACGGGGCAGGAG
GAGCGAGGCTCGTCCATCTGGTGGTCGACGCCGCGGTAGCTTCAGGCAGG
GTGTCAATCAAAGCGTACGTCAGCACGGCAGTCAATATCAGTGGTGCTCC
TGTCGCGAACATCTTTCATCAGGTGAAGTTAGATGTGGTAAGCACGGCCC
CAGAAAAGGTTTGTTTGGATAGAATGATTCGGGGTCAGGAGAGGGAGAAG
GCATGGATGGCGAGCGAAACAGTGGCCACGGACCTAGAAGCATCAGTGGC
GACATTGTTGGGCATGCTGGAGCAGGTGAGTGGATTCGTGGACAGGGTGG
TTGCAGGGGAGGAAGAGCCTGATAGCACGGTGGGGTGTGAGATTGCTGAT
ACGCTGTCAGCGGTGCCGAGGGTGAGGCCGGAGTTGTTTGATTCCATATT
TAGTGGGAATTTGCAAGATTTGCTGATGGTTAGTTATTTGTCGAGTTTGA
CCAAGGCGAATCTGGCGATTTCCGAGAAGCTGAGTGGGTTGCGGAATAAG
TAGAAGGGGGGGAGGAGGGTGCTAGGGAGGGAGGAGGGATGTGCACGGGG
GTGAAGGAGGTCGGAATGAAGGAAGGGAAGAAGTATGTAGGATGCGTGTA
TTTGTTTGTGTGGGAGGAGGGGCAGGGCAGAGGGAGAGAGGAGTGTGGGT
GGAGGGCAGGGGGGAGAGCAGCAAAGCAACATAGCACAAATTCAACTCAG
AAGGCTCCCATTATGTCTTAGGAAGCGAAAAGAAAAACAGCAGCGGCAGC
AGAATCAGCAGCCGCCGAAGCAGGCC
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protein sequence of jgi.p|Nanoce1779_2|555688

>mRNA_5813-protein ID=mRNA_5813-protein|Name=jgi.p|Nanoce1779_2|555688|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MALQGSTADALFVDNVQNVHVKVHPVVVFGILDHYNRRPEPGPVRVIGTL
LGTVVGNVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIV
GWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGR
VSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIRGQEREK
AWMASETVATDLEASVATLLGMLEQVSGFVDRVVAGEEEPDSTVGCEIAD
TLSAVPRVRPELFDSIFSGNLQDLLMVSYLSSLTKANLAISEKLSGLRNK
*
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mRNA from alignment at scaffold_11:630013..631224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5813 ID=mRNA_5813|Name=jgi.p|Nanoce1779_2|555688|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp|location=Sequence derived from alignment at scaffold_11:630013..631224- (Nannochloropsis oceanica)
ATGGCGTTGCAGGGCTCCACGGCCGACGCCCTGTTCGTTGACAACGTGCA
AAATGTCCATGTCAAGGTCCACCCCGTTGTTGTCTTCGGCATCCTCGACC
ACTACAATCGTCGCCCTGAACCAGGGCCTGTCCGCGTTATCGGTACGCTG
CTCGGAACGGTGGTGGGAAATGTGGTGGAGATTCACAATGCTTTTGGGGT
GCCGCATGCAGAGAAGGAAAATGAGGTTGCTTTGGGGCAGGACTATCATC
GCGCGATGTACTCGCATTTCACGCGGATCAACGACAAGGAGCGGATTGTG
GGCTGGTATGCGACTACCTTGGAAGGGGGACGGGCCCTGAATTCTAACAG
CATCATTATCCATGGGTTCTATGCGGGGAATGCTGATCACGGGGCAGGAG
GAGCGAGGCTCGTCCATCTGGTGGTCGACGCCGCGGTAGCTTCAGGCAGG
GTGTCAATCAAAGCGTACGTCAGCACGGCAGTCAATATCAGTGGTGCTCC
TGTCGCGAACATCTTTCATCAGGTGAAGTTAGATGTGGTAAGCACGGCCC
CAGAAAAGGTTTGTTTGGATAGAATGATTCGGGGTCAGGAGAGGGAGAAG
GCATGGATGGCGAGCGAAACAGTGGCCACGGTGCTGCCGGGGGGGGGGGC
AGCAGCCGCGAGGGAGGACCTAGAAGCATCAGTGGCGACATTGTTGGGCA
TGCTGGAGCAGGTGAGTGGATTCGTGGACAGGGTGGTTGCAGGGGAGGAA
GAGCCTGATAGCACGGTGGGGTGTGAGATTGCTGATACGCTGTCAGCGGT
GCCGAGGGTGAGGCCGGAGTTGTTTGATTCCATATTTAGTGGGAATTTGC
AAGATTTGCTGATGGTTAGTTATTTGTCGAGTTTGACCAAGGCGAATCTG
GCGATTTCCGAGAAGCTGAGTGGGTTGCGGAATAAGTAGAAGGGGGGGAG
GAGGGTGCTAGGGAGGGAGGAGGGATGTGCACGGGGGTGAAGGAGGTCGG
AATGAAGGAAGGGAAGAAGTATGTAGGATGCGTGTATTTGTTTGTGTGGG
AGGAGGGGCAGGGCAGAGGGAGAGAGGAGTGTGGGTGGAGGGCAGGGGGG
AGAGCAGCAAAGCAACATAGCACAAATTCAACTCAGAAGGCTCCCATTAT
GTCTTAGGAAGCGAAAAGAAAAACAGCAGCGGCAGCAGAATCAGCAGCCG
CCGAAGCAGGCC
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Coding sequence (CDS) from alignment at scaffold_11:630013..631224-

>mRNA_5813 ID=mRNA_5813|Name=jgi.p|Nanoce1779_2|555688|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at scaffold_11:630013..631224- (Nannochloropsis oceanica)
GACCTAGAAGCATCAGTGGCGACATTGTTGGGCATGCTGGAGCAGGTGAG
TGGATTCGTGGACAGGGTGGTTGCAGGGGAGGAAGAGCCTGATAGCACGG
TGGGGTGTGAGATTGCTGATACGCTGTCAGCGGTGCCGAGGGTGAGGCCG
GAGTTGTTTGATTCCATATTTAGTGGGAATTTGCAAGATTTGCTGATGGT
TAGTTATTTGTCGAGTTTGACCAAGGCGAATCTGGCGATTTCCGAGAAGC
TGAGTGGGTTGCGGAATAAGTAGATGGCGTTGCAGGGCTCCACGGCCGAC
GCCCTGTTCGTTGACAACGTGCAAAATGTCCATGTCAAGGTCCACCCCGT
TGTTGTCTTCGGCATCCTCGACCACTACAATCGTCGCCCTGAACCAGGGC
CTGTCCGCGTTATCGGTACGCTGCTCGGAACGGTGGTGGGAAATGTGGTG
GAGATTCACAATGCTTTTGGGGTGCCGCATGCAGAGAAGGAAAATGAGGT
TGCTTTGGGGCAGGACTATCATCGCGCGATGTACTCGCATTTCACGCGGA
TCAACGACAAGGAGCGGATTGTGGGCTGGTATGCGACTACCTTGGAAGGG
GGACGGGCCCTGAATTCTAACAGCATCATTATCCATGGGTTCTATGCGGG
GAATGCTGATCACGGGGCAGGAGGAGCGAGGCTCGTCCATCTGGTGGTCG
ACGCCGCGGTAGCTTCAGGCAGGGTGTCAATCAAAGCGTACGTCAGCACG
GCAGTCAATATCAGTGGTGCTCCTGTCGCGAACATCTTTCATCAGGTGAA
GTTAGATGTGGTAAGCACGGCCCCAGAAAAGGTTTGTTTGGATAGAATGA
TTCGGGGTCAGGAGAGGGAGAAGGCATGGATGGCGAGCGAAACAGTGGCC
ACGGACCTAGAAGCATCAGTGGCGACATTGTTGGGCATGCTGGAGCAGGT
GAGTGGATTCGTGGACAGGGTGGTTGCAGGGGAGGAAGAGCCTGATAGCA
CGGTGGGGTGTGAGATTGCTGATACGCTGTCAGCGGTGCCGAGGGTGAGG
CCGGAGTTGTTTGATTCCATATTTAGTGGGAATTTGCAAGATTTGCTGAT
GGTTAGTTATTTGTCGAGTTTGACCAAGGCGAATCTGGCGATTTCCGAGA
AGCTGAGTGGGTTGCGGAATAAGTAGATGGCGTTGCAGGGCTCCACGGCC
GACGCCCTGTTCGTTGACAACGTGCAAAATGTCCATGTCAAGGTCCACCC
CGTTGTTGTCTTCGGCATCCTCGACCACTACAATCGTCGCCCTGAACCAG
GGCCTGTCCGCGTTATCGGTACGCTGCTCGGAACGGTGGTGGGAAATGTG
GTGGAGATTCACAATGCTTTTGGGGTGCCGCATGCAGAGAAGGAAAATGA
GGTTGCTTTGGGGCAGGACTATCATCGCGCGATGTACTCGCATTTCACGC
GGATCAACGACAAGGAGCGGATTGTGGGCTGGTATGCGACTACCTTGGAA
GGGGGACGGGCCCTGAATTCTAACAGCATCATTATCCATGGGTTCTATGC
GGGGAATGCTGATCACGGGGCAGGAGGAGCGAGGCTCGTCCATCTGGTGG
TCGACGCCGCGGTAGCTTCAGGCAGGGTGTCAATCAAAGCGTACGTCAGC
ACGGCAGTCAATATCAGTGGTGCTCCTGTCGCGAACATCTTTCATCAGGT
GAAGTTAGATGTGGTAAGCACGGCCCCAGAAAAGGTTTGTTTGGATAGAA
TGATTCGGGGTCAGGAGAGGGAGAAGGCATGGATGGCGAGCGAAACAGTG
GCCACG
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Synonyms
Publications