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Properties
| Property Name | Value |
|---|
| TranscriptId | 555549 |
| Track | FilteredModels2 |
| ProteinId | 555463 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:275768..277451 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5668 ID=mRNA_5668|Name=jgi.p|Nanoce1779_2|555463|organism=Nannochloropsis oceanica|type=mRNA|length=1111bp
CAGGGAGCAGGGAGCAAGACACACCAAGAAGTAAAGCAAGTCGACCTCCC
CTCCCCCTCATCATCGTCTCCCGCTCCTCCCACTCCTTTCCGAAGCACGC
TCGGGCTCACCACCTGTACCACCACCAGTCGGATGAGTGATGGCGACGGC
CATATCACGCAAGCTAGCAGCGGCAGTAGTAGCTGTGCCATGAGCAGCTG
GAAAGCAAAAGAGAAGGTGGACGACGTCCCCCGGATTCAGCGTCTGGAGG
TCGATGTGGTGAATCGCATCGCGGCAGGCGAGGTGGTGGCCAAGCCAGCT
AATGCAGTCAAGGAGCTTGTTGAAAATAGTTTGGACGCAGGTGCCAAATC
GATAGTGGTAACAGTGAAGGATGGAGGCATGCGCCTCTTACAGATCCAAG
ACGACGGGCACGGCATTCGGGTGGGCGATTTCCCCCTCCTCTGCGAACGC
TTCACTACTAGCAAGCTCCGAAACTTCGACGACTTGAAAAGCATTGCCTC
CTTCGGGTTTAGAGGAGAGGCTCTTGCCAGCGTCACCCACGTGGCTCATG
TAACGGTCACGAGTAAAACGAGGGATAGCCCATGTGCCTACAAAGCCCGG
TTCTCGGACGGGAAGATCATTCCGTTTGATGCTGCGGCTGCTGCTGCAGG
GGGAGGAAGAGGAGGAGGAGGGGGGGGAGGGAGTGGAAATCCCTTGCCCT
GCGCAGGGACGAATGGGACGACCATCACGGTGGAAGACTTGTTCTACAAC
ATGCATACGCGTCGACAAGCCCTCAAAAACCCTAATGACCTCTACCGTGC
CATCCTCGACGTGGTGACGCGCTATGCCGTGCACTTCGGAAAGGATGGGG
TCTCCTTCACCTGCAAGAAGCAAGGCCAAGCCCGCCCCGACCTCTACACC
CCCCAGCGAGGGGCCTCGGTTCTCAACAACATTAAAATTGCCTTCGGTCA
GGTTCTGGGGAGGGAGCTATTGGCCCTCGATCTCTCTTTCCCTTGCTCGC
TCGCTGAGAGGGAGGGAGGGAAGGAAGGGGGGGCTGCGCCCGGGAATGTA
GAGAGGGAAGAGGGGGAGGGAGGAAGGGAGGAAGGGCAACAAAAGCTGTC
GTTCAAGGCCT back to topprotein sequence of jgi.p|Nanoce1779_2|555463 >mRNA_5668-protein ID=mRNA_5668-protein|Name=jgi.p|Nanoce1779_2|555463|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MSDGDGHITQASSGSSSCAMSSWKAKEKVDDVPRIQRLEVDVVNRIAAGE
VVAKPANAVKELVENSLDAGAKSIVVTVKDGGMRLLQIQDDGHGIRVGDF
PLLCERFTTSKLRNFDDLKSIASFGFRGEALASVTHVAHVTVTSKTRDSP
CAYKARFSDGKIIPFDAAAAAAGGGRGGGGGGGSGNPLPCAGTNGTTITV
EDLFYNMHTRRQALKNPNDLYRAILDVVTRYAVHFGKDGVSFTCKKQGQA
RPDLYTPQRGASVLNNIKIAFGQVLGRELLALDLSFPCSLAEREGGKEGG
AAPGNVEREEGEGGREEGQQKLSFKA back to topmRNA from alignment at scaffold_11:275768..277451- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5668 ID=mRNA_5668|Name=jgi.p|Nanoce1779_2|555463|organism=Nannochloropsis oceanica|type=mRNA|length=1684bp|location=Sequence derived from alignment at scaffold_11:275768..277451- (Nannochloropsis oceanica)
CAGGGAGCAGGGAGCAAGACACACCAAGAAGTAAAGCAAGTCGACCTCCC
CTCCCCCTCATCATCGTCTCCCGCTCCTCCCACTCCTTTCCGAAGCACGC
TCGGGCTCACCACCTGTACCACCACCAGTCGGATGAGTGATGGCGACGGC
CATATCACGCAAGCTAGCAGCGGCAGTAGTAGCTGTGCCATGAGCAGCTG
GAAAGCAAAAGAGAAGGTGGACGACGTCCCCCGGATTCAGCGTCTGGAGG
TCGATGTGGTGAATCGCATCGCGGCAGGCGAGGTGGTGGCCAAGCCAGCT
AATGCAGTCAAGGTAGGAAAGAATGGTCTAAGAGGGCGAAATCATGGCAT
GATGAGGAATAGGAGGAGGAGAAGAAGGAAGAATAAGGAAAGGAAAGAGT
CAGGGGAGTGACAACAACGAGCACTTCATCGCTCTCCTCACCTCCGCTCT
CTCCGTTTCACAGGAGCTTGTTGAAAATAGTTTGGACGCAGGTGCCAAAT
CGATAGTGGTAACAGTGAAGGATGGAGGCATGCGCCTCTTACAGATCCAA
GACGACGGGCACGGCATTCGGGTGCGTACACGCCCTCCTTCCCTCCCTCC
CTCCCTCCCTCCCTTCCTCCCTCCCCTCATTCCCTTCGTTACCAGCTTCC
ATCCCTCCCTCCCTCCCTCCCTCCATCCCTCCATCCCTTCCTTCATCCTG
TCTTTCAGGTGGGCGATTTCCCCCTCCTCTGCGAACGCTTCACTACTAGC
AAGCTCCGAAACTTCGACGACTTGAAAAGCATTGCCTCCTTCGGGTTTAG
AGGAGAGGCTCTTGCCAGCGTCACCCACGTGGCTCATGTAACGGTCACGA
GTAAAACGAGGGATAGCCCATGTGCCTACAAAGCCCGGTTCTCGGACGGG
AAGATCATTCCGTTTGATGCTGCGGCTGCTGCTGCAGGGGGAGGAAGAGG
AGGAGGAGGGGGGGGAGGGAGTGGAAATCCCTTGCCCTGCGCAGGGACGA
ATGGGACGACCATCACGGTAAGAAGGGAGGGAGGGAGGTGAAGAGGGAAT
AAGGGAAGGAGGGAAGGAGAGAGGGGGATTATCTAAGTATAAATGATTGG
CTCACCCCTCCCCATCCCTCCCCCTCACCCAGGTGGAAGACTTGTTCTAC
AACATGCATACGCGTCGACAAGCCCTCAAAAACCCTAATGACCTCTACCG
TGCCATCCTCGACGTGGTGACGCGCTATGCCGTGCACTTCGGAAAGGATG
GGGTCTCCTTCACCTGCAAGAAGGTCCGTCCCTCCCGCCCTCCCTCCCTC
TCGTCCTCCCTCCCGCCCTCCCTCCCTCCCTCCCTCCCACCCTTTCCCAC
GCGCTCCAGCCTTGATGCCTGTCAAAAGCACGACACCTTTATCTCCCTTC
CTCTGCCCTTCCTCTCCCCCTCCCTCCTCCCAACCTTCATCAGCAAGGCC
AAGCCCGCCCCGACCTCTACACCCCCCAGCGAGGGGCCTCGGTTCTCAAC
AACATTAAAATTGCCTTCGGTCAGGTTCTGGGGAGGGAGCTATTGGCCCT
CGATCTCTCTTTCCCTTGCTCGCTCGCTGAGAGGGAGGGAGGGAAGGAAG
GGGGGGCTGCGCCCGGGAATGTAGAGAGGGAAGAGGGGGAGGGAGGAAGG
GAGGAAGGGCAACAAAAGCTGTCGTTCAAGGCCT back to topCoding sequence (CDS) from alignment at scaffold_11:275768..277451- >mRNA_5668 ID=mRNA_5668|Name=jgi.p|Nanoce1779_2|555463|organism=Nannochloropsis oceanica|type=CDS|length=4890bp|location=Sequence derived from alignment at scaffold_11:275768..277451- (Nannochloropsis oceanica)
CAAGGCCAAGCCCGCCCCGACCTCTACACCCCCCAGCGAGGGGCCTCGGT
TCTCAACAACATTAAAATTGCCTTCGGTCAGGTTCTGGGGAGGGAGCTAT
TGGCCCTCGATCTCTCTTTCCCTTGCTCGCTCGCTGAGAGGGAGGGAGGG
AAGGAAGGGGGGGCTGCGCCCGGGAATGTAGAGAGGGAAGAGGGGGAGGG
AGGAAGGGAGGAAGGGCAACAAAAGCTGTCGTTCAAGGCCGTGGAAGACT
TGTTCTACAACATGCATACGCGTCGACAAGCCCTCAAAAACCCTAATGAC
CTCTACCGTGCCATCCTCGACGTGGTGACGCGCTATGCCGTGCACTTCGG
AAAGGATGGGGTCTCCTTCACCTGCAAGAAGGTGGGCGATTTCCCCCTCC
TCTGCGAACGCTTCACTACTAGCAAGCTCCGAAACTTCGACGACTTGAAA
AGCATTGCCTCCTTCGGGTTTAGAGGAGAGGCTCTTGCCAGCGTCACCCA
CGTGGCTCATGTAACGGTCACGAGTAAAACGAGGGATAGCCCATGTGCCT
ACAAAGCCCGGTTCTCGGACGGGAAGATCATTCCGTTTGATGCTGCGGCT
GCTGCTGCAGGGGGAGGAAGAGGAGGAGGAGGGGGGGGAGGGAGTGGAAA
TCCCTTGCCCTGCGCAGGGACGAATGGGACGACCATCACGGAGCTTGTTG
AAAATAGTTTGGACGCAGGTGCCAAATCGATAGTGGTAACAGTGAAGGAT
GGAGGCATGCGCCTCTTACAGATCCAAGACGACGGGCACGGCATTCGGAT
GAGTGATGGCGACGGCCATATCACGCAAGCTAGCAGCGGCAGTAGTAGCT
GTGCCATGAGCAGCTGGAAAGCAAAAGAGAAGGTGGACGACGTCCCCCGG
ATTCAGCGTCTGGAGGTCGATGTGGTGAATCGCATCGCGGCAGGCGAGGT
GGTGGCCAAGCCAGCTAATGCAGTCAAGCAAGGCCAAGCCCGCCCCGACC
TCTACACCCCCCAGCGAGGGGCCTCGGTTCTCAACAACATTAAAATTGCC
TTCGGTCAGGTTCTGGGGAGGGAGCTATTGGCCCTCGATCTCTCTTTCCC
TTGCTCGCTCGCTGAGAGGGAGGGAGGGAAGGAAGGGGGGGCTGCGCCCG
GGAATGTAGAGAGGGAAGAGGGGGAGGGAGGAAGGGAGGAAGGGCAACAA
AAGCTGTCGTTCAAGGCCGTGGAAGACTTGTTCTACAACATGCATACGCG
TCGACAAGCCCTCAAAAACCCTAATGACCTCTACCGTGCCATCCTCGACG
TGGTGACGCGCTATGCCGTGCACTTCGGAAAGGATGGGGTCTCCTTCACC
TGCAAGAAGGTGGGCGATTTCCCCCTCCTCTGCGAACGCTTCACTACTAG
CAAGCTCCGAAACTTCGACGACTTGAAAAGCATTGCCTCCTTCGGGTTTA
GAGGAGAGGCTCTTGCCAGCGTCACCCACGTGGCTCATGTAACGGTCACG
AGTAAAACGAGGGATAGCCCATGTGCCTACAAAGCCCGGTTCTCGGACGG
GAAGATCATTCCGTTTGATGCTGCGGCTGCTGCTGCAGGGGGAGGAAGAG
GAGGAGGAGGGGGGGGAGGGAGTGGAAATCCCTTGCCCTGCGCAGGGACG
AATGGGACGACCATCACGGAGCTTGTTGAAAATAGTTTGGACGCAGGTGC
CAAATCGATAGTGGTAACAGTGAAGGATGGAGGCATGCGCCTCTTACAGA
TCCAAGACGACGGGCACGGCATTCGGATGAGTGATGGCGACGGCCATATC
ACGCAAGCTAGCAGCGGCAGTAGTAGCTGTGCCATGAGCAGCTGGAAAGC
AAAAGAGAAGGTGGACGACGTCCCCCGGATTCAGCGTCTGGAGGTCGATG
TGGTGAATCGCATCGCGGCAGGCGAGGTGGTGGCCAAGCCAGCTAATGCA
GTCAAGCAAGGCCAAGCCCGCCCCGACCTCTACACCCCCCAGCGAGGGGC
CTCGGTTCTCAACAACATTAAAATTGCCTTCGGTCAGGTTCTGGGGAGGG
AGCTATTGGCCCTCGATCTCTCTTTCCCTTGCTCGCTCGCTGAGAGGGAG
GGAGGGAAGGAAGGGGGGGCTGCGCCCGGGAATGTAGAGAGGGAAGAGGG
GGAGGGAGGAAGGGAGGAAGGGCAACAAAAGCTGTCGTTCAAGGCCGTGG
AAGACTTGTTCTACAACATGCATACGCGTCGACAAGCCCTCAAAAACCCT
AATGACCTCTACCGTGCCATCCTCGACGTGGTGACGCGCTATGCCGTGCA
CTTCGGAAAGGATGGGGTCTCCTTCACCTGCAAGAAGGTGGGCGATTTCC
CCCTCCTCTGCGAACGCTTCACTACTAGCAAGCTCCGAAACTTCGACGAC
TTGAAAAGCATTGCCTCCTTCGGGTTTAGAGGAGAGGCTCTTGCCAGCGT
CACCCACGTGGCTCATGTAACGGTCACGAGTAAAACGAGGGATAGCCCAT
GTGCCTACAAAGCCCGGTTCTCGGACGGGAAGATCATTCCGTTTGATGCT
GCGGCTGCTGCTGCAGGGGGAGGAAGAGGAGGAGGAGGGGGGGGAGGGAG
TGGAAATCCCTTGCCCTGCGCAGGGACGAATGGGACGACCATCACGGAGC
TTGTTGAAAATAGTTTGGACGCAGGTGCCAAATCGATAGTGGTAACAGTG
AAGGATGGAGGCATGCGCCTCTTACAGATCCAAGACGACGGGCACGGCAT
TCGGATGAGTGATGGCGACGGCCATATCACGCAAGCTAGCAGCGGCAGTA
GTAGCTGTGCCATGAGCAGCTGGAAAGCAAAAGAGAAGGTGGACGACGTC
CCCCGGATTCAGCGTCTGGAGGTCGATGTGGTGAATCGCATCGCGGCAGG
CGAGGTGGTGGCCAAGCCAGCTAATGCAGTCAAGCAAGGCCAAGCCCGCC
CCGACCTCTACACCCCCCAGCGAGGGGCCTCGGTTCTCAACAACATTAAA
ATTGCCTTCGGTCAGGTTCTGGGGAGGGAGCTATTGGCCCTCGATCTCTC
TTTCCCTTGCTCGCTCGCTGAGAGGGAGGGAGGGAAGGAAGGGGGGGCTG
CGCCCGGGAATGTAGAGAGGGAAGAGGGGGAGGGAGGAAGGGAGGAAGGG
CAACAAAAGCTGTCGTTCAAGGCCGTGGAAGACTTGTTCTACAACATGCA
TACGCGTCGACAAGCCCTCAAAAACCCTAATGACCTCTACCGTGCCATCC
TCGACGTGGTGACGCGCTATGCCGTGCACTTCGGAAAGGATGGGGTCTCC
TTCACCTGCAAGAAGGTGGGCGATTTCCCCCTCCTCTGCGAACGCTTCAC
TACTAGCAAGCTCCGAAACTTCGACGACTTGAAAAGCATTGCCTCCTTCG
GGTTTAGAGGAGAGGCTCTTGCCAGCGTCACCCACGTGGCTCATGTAACG
GTCACGAGTAAAACGAGGGATAGCCCATGTGCCTACAAAGCCCGGTTCTC
GGACGGGAAGATCATTCCGTTTGATGCTGCGGCTGCTGCTGCAGGGGGAG
GAAGAGGAGGAGGAGGGGGGGGAGGGAGTGGAAATCCCTTGCCCTGCGCA
GGGACGAATGGGACGACCATCACGGAGCTTGTTGAAAATAGTTTGGACGC
AGGTGCCAAATCGATAGTGGTAACAGTGAAGGATGGAGGCATGCGCCTCT
TACAGATCCAAGACGACGGGCACGGCATTCGGATGAGTGATGGCGACGGC
CATATCACGCAAGCTAGCAGCGGCAGTAGTAGCTGTGCCATGAGCAGCTG
GAAAGCAAAAGAGAAGGTGGACGACGTCCCCCGGATTCAGCGTCTGGAGG
TCGATGTGGTGAATCGCATCGCGGCAGGCGAGGTGGTGGCCAAGCCAGCT
AATGCAGTCAAGCAAGGCCAAGCCCGCCCCGACCTCTACACCCCCCAGCG
AGGGGCCTCGGTTCTCAACAACATTAAAATTGCCTTCGGTCAGGTTCTGG
GGAGGGAGCTATTGGCCCTCGATCTCTCTTTCCCTTGCTCGCTCGCTGAG
AGGGAGGGAGGGAAGGAAGGGGGGGCTGCGCCCGGGAATGTAGAGAGGGA
AGAGGGGGAGGGAGGAAGGGAGGAAGGGCAACAAAAGCTGTCGTTCAAGG
CCGTGGAAGACTTGTTCTACAACATGCATACGCGTCGACAAGCCCTCAAA
AACCCTAATGACCTCTACCGTGCCATCCTCGACGTGGTGACGCGCTATGC
CGTGCACTTCGGAAAGGATGGGGTCTCCTTCACCTGCAAGAAGGTGGGCG
ATTTCCCCCTCCTCTGCGAACGCTTCACTACTAGCAAGCTCCGAAACTTC
GACGACTTGAAAAGCATTGCCTCCTTCGGGTTTAGAGGAGAGGCTCTTGC
CAGCGTCACCCACGTGGCTCATGTAACGGTCACGAGTAAAACGAGGGATA
GCCCATGTGCCTACAAAGCCCGGTTCTCGGACGGGAAGATCATTCCGTTT
GATGCTGCGGCTGCTGCTGCAGGGGGAGGAAGAGGAGGAGGAGGGGGGGG
AGGGAGTGGAAATCCCTTGCCCTGCGCAGGGACGAATGGGACGACCATCA
CGGAGCTTGTTGAAAATAGTTTGGACGCAGGTGCCAAATCGATAGTGGTA
ACAGTGAAGGATGGAGGCATGCGCCTCTTACAGATCCAAGACGACGGGCA
CGGCATTCGGATGAGTGATGGCGACGGCCATATCACGCAAGCTAGCAGCG
GCAGTAGTAGCTGTGCCATGAGCAGCTGGAAAGCAAAAGAGAAGGTGGAC
GACGTCCCCCGGATTCAGCGTCTGGAGGTCGATGTGGTGAATCGCATCGC
GGCAGGCGAGGTGGTGGCCAAGCCAGCTAATGCAGTCAAG back to top
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