jgi.p|Nanoce1779_2|590198, mRNA_5748 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590198
Unique Name	mRNA_5748
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1797
Alignment location	scaffold_11:482662..484516 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590284
Track	FilteredModels2
ProteinId	590198

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:482662..484516 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590198	gene_5748	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590198	mRNA_5748-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5748	CDS_5748	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:482662..484516+
coding sequence from alignment at scaffold_11:482662..484516+

mRNA sequence

>mRNA_5748 ID=mRNA_5748|Name=jgi.p|Nanoce1779_2|590198|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp
TTGGGGGGGATGCAAGCGGGTATAAAGTGAGTGGGGGGTTACATGGGGTG
GGTGTGTCTGTTGTGAATGCCTTGAGTGAAAGTCTAACGGCCACGGTAAG
GAGGAACGGGAATTTGCATGTGATGCGGTTTGCGCGAGGAGTGCCTCTGG
GGGATATGGAGATAAGGCCGGATCCGGAAGCGGGGACTGTCGGGGGTGGG
GGAGGGAAGACGGGGAGGCCGAGGAGTGGTACAACTATTTCCTTCAAGCC
TGACGCGGAGATTTTCAAGACGGCCACAACGTTTGAGTTTGATCGGGTGT
CGGGGAGATTGGATGAGCTGGCGTACTTGAATGCAGGCATTAGGATTGTG
ATGGCCGATAAGAGAGGGGAGGGACGGAGAGAGGAGTTCTTTCATGAGGG
TGGGATTAGGGAGTATGTGGAGTTGATAAAAATGGGGGTAACAGTCGAAG
CGGCGCTGAGGTGGTCGAGGGATCAATATGATGATTTGTTGATCGGCTTT
GCGAATGGGATCAGGACGGGGGATGGTGGCACTCACTTGGATGGGCTCAA
AAGTGTGTTGACAAGGACGATCAACAACATGGCGCGGAAAAGTGGGAAGC
TTAAGGAGGGGAAGGATAATCTATCTGGTGATTTTGTTCGAGAAGGGCTT
ACGGCCGTCGTGAGTGTCAAGGTTCCCGATCCTGAGTTTGAGGGACAAAC
CAAAAATAGGCTGGGTAACCCGGAAGTACGTGGGATTGTAGACGCGATTA
TCGGCGAGAATTTGGTGAACACTTTTGAGTGGAACCCCAAGGTGCTTGGC
GCCATTGTCGATAAAGCTATGTCGGCCCAGCAAGCCGCGCAAGCTGCAAA
AGCGGCCAGGGATATGGTGCGGAGGAAGTCATTGTTGTCCAGCACGGTCT
TACCGGGCAAGCTGGCGGATTGCTCCTCGCGGGACCCGACTGAAAGCGAG
ATTTACATCGTGGAAGGTGACTCTGCTGCAGGCAGCGCCAAGCAAGGGAG
GGATCGTCGGACGCAAGCTATTCTACCTCTGCGTGGAAAGATTTTGAATA
TTGAAAAGGCGGCCACGGAAAAGATTTATCAAAACACGGAGTTGCAGGCG
TTGATCTCAGCGTTGGGATTGGGGATTAAAGGGAATGAGTTCGACCCGGC
CACTCTGCGTTATCATCGCATAATGATCATGACAGATGCTGATGTGGATG
GCTCGCATATTCGCATTTTGCTCTTGACCTTCCTCTTTCGGTATCAGCGG
GCGTTGGTTGAGAGAGGGTACATCTATATAGCCTGTCCACCGCTTTATAA
GGTCACACAAGGGAAGAACATCAAGTATGCTTACTCACAAGAAGAGCTTG
AAGATGTGCAGGCTTCGTTTACAGGTAAGGCTGCCGTTTCCCTCCAGCGA
TTCAAGGGGTTGGGGGAGATGATGCCTACACAATTGTGGGAAACGACCAT
GAACCCCGAGACGAGGATATTGAAGCAGGTGACGATTGAGGACGCGGCGG
AGGCGGATAAGATGTTTATGCTACTGATGGGTGATGCGGTGGGTCCGAGA
AAAGACTTCATCAATAGGAATGCCGGGGCCATGGGGTTGGACGACCTTGA
CTTTTAGTCGAGAGAGGGGGGGAAAACGGAGCAAGGGCGGGAAAAGAGGG
GAAGGAAGAAGGATTGGGTGGTTTAAGCAAGGAACATCAAAATTCATAAG
CATGAAGAGAGGCCAAAGCATACCGTAAAATGGGCCTTCCTCTTTGGCTG
GGTCTGAAGAGGAAGTAACGACATAAAAGAAAGCACCCACTTACTCA

protein sequence of jgi.p|Nanoce1779_2|590198

>mRNA_5748-protein ID=mRNA_5748-protein|Name=jgi.p|Nanoce1779_2|590198|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MRFARGVPLGDMEIRPDPEAGTVGGGGGKTGRPRSGTTISFKPDAEIFKT
ATTFEFDRVSGRLDELAYLNAGIRIVMADKRGEGRREEFFHEGGIREYVE
LIKMGVTVEAALRWSRDQYDDLLIGFANGIRTGDGGTHLDGLKSVLTRTI
NNMARKSGKLKEGKDNLSGDFVREGLTAVVSVKVPDPEFEGQTKNRLGNP
EVRGIVDAIIGENLVNTFEWNPKVLGAIVDKAMSAQQAAQAAKAARDMVR
RKSLLSSTVLPGKLADCSSRDPTESEIYIVEGDSAAGSAKQGRDRRTQAI
LPLRGKILNIEKAATEKIYQNTELQALISALGLGIKGNEFDPATLRYHRI
MIMTDADVDGSHIRILLLTFLFRYQRALVERGYIYIACPPLYKVTQGKNI
KYAYSQEELEDVQASFTGKAAVSLQRFKGLGEMMPTQLWETTMNPETRIL
KQVTIEDAAEADKMFMLLMGDAVGPRKDFINRNAGAMGLDDLDF*

mRNA from alignment at scaffold_11:482662..484516+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5748 ID=mRNA_5748|Name=jgi.p|Nanoce1779_2|590198|organism=Nannochloropsis oceanica|type=mRNA|length=1855bp|location=Sequence derived from alignment at scaffold_11:482662..484516+ (Nannochloropsis oceanica)
TTGGGGGGGATGCAAGCGGGTATAAAGTGAGTGGGGGGTTACATGGGGTG
GGTGTGTCTGTTGTGAATGCCTTGAGTGAAAGTCTAACGGCCACGGTAAG
GAGGAACGGGAATTTGCATGTGATGCGGTTTGCGCGAGGAGTGCCTCTGG
GGGATATGGAGATAAGGCCGGATCCGGAAGCGGGGACTGTCGGGGGTGGG
GGAGGGAAGACGGGGAGGCCGAGGAGTGGTACAACTATTTCCTTCAAGCC
TGACGCGGAGATTTTCAAGACGGCCACAACGTTTGAGTTTGATCGGGTGT
CGGGGAGATTGGATGAGCTGGCGTACTTGAATGCAGGCATTAGGATTGTG
ATGGCCGATAAGAGAGGGGAGGGACGGAGAGAGGAGTTCTTTCATGAGGG
TGGGATTAGGGAGTATGTGGAGTTGATGTGTAGTAGTAAGGAGAAGCTGC
ATCCGGAAGTGGATGTGATTCATGCCGTAGGGGAGAAAAATGGGGGTAAC
AGTCGAAGCGGCGCTGAGGTGGTCGAGGGATCAATATGATGATTTGTTGA
TCGGCTTTGCGAATGGGATCAGGACGGGGGATGGTGGCACTCACTTGGAT
GGGCTCAAAAGTGTGTTGACAAGGACGATCAACAACATGGCGCGGAAAAG
TGGGAAGCTTAAGGAGGGGAAGGATAATCTATCTGGTGATTTTGTTCGAG
AAGGGCTTACGGCCGTCGTGAGTGTCAAGGTTCCCGATCCTGAGTTTGAG
GGACAAACCAAAAATAGGCTGGGTAACCCGGAAGTACGTGGGATTGTAGA
CGCGATTATCGGCGAGAATTTGGTGAACACTTTTGAGTGGAACCCCAAGG
TGCTTGGCGCCATTGTCGATAAAGCTATGTCGGCCCAGCAAGCCGCGCAA
GCTGCAAAAGCGGCCAGGGATATGGTGCGGAGGAAGTCATTGTTGTCCAG
CACGGTCTTACCGGGCAAGCTGGCGGATTGCTCCTCGCGGGACCCGACTG
AAAGCGAGATTTACATCGTGGAAGGTGACTCTGCTGCAGGCAGCGCCAAG
CAAGGGAGGGATCGTCGGACGCAAGCTATTCTACCTCTGCGTGGAAAGAT
TTTGAATATTGAAAAGGCGGCCACGGAAAAGATTTATCAAAACACGGAGT
TGCAGGCGTTGATCTCAGCGTTGGGATTGGGGATTAAAGGGAATGAGTTC
GACCCGGCCACTCTGCGTTATCATCGCATAATGATCATGACAGATGCTGA
TGTGGATGGCTCGCATATTCGCATTTTGCTCTTGACCTTCCTCTTTCGGT
ATCAGCGGGCGTTGGTTGAGAGAGGGTACATCTATATAGCCTGTCCACCG
CTTTATAAGGTCACACAAGGGAAGAACATCAAGTATGCTTACTCACAAGA
AGAGCTTGAAGATGTGCAGGCTTCGTTTACAGGTAAGGCTGCCGTTTCCC
TCCAGCGATTCAAGGGGTTGGGGGAGATGATGCCTACACAATTGTGGGAA
ACGACCATGAACCCCGAGACGAGGATATTGAAGCAGGTGACGATTGAGGA
CGCGGCGGAGGCGGATAAGATGTTTATGCTACTGATGGGTGATGCGGTGG
GTCCGAGAAAAGACTTCATCAATAGGAATGCCGGGGCCATGGGGTTGGAC
GACCTTGACTTTTAGTCGAGAGAGGGGGGGAAAACGGAGCAAGGGCGGGA
AAAGAGGGGAAGGAAGAAGGATTGGGTGGTTTAAGCAAGGAACATCAAAA
TTCATAAGCATGAAGAGAGGCCAAAGCATACCGTAAAATGGGCCTTCCTC
TTTGGCTGGGTCTGAAGAGGAAGTAACGACATAAAAGAAAGCACCCACTT
ACTCA

Coding sequence (CDS) from alignment at scaffold_11:482662..484516+

>mRNA_5748 ID=mRNA_5748|Name=jgi.p|Nanoce1779_2|590198|organism=Nannochloropsis oceanica|type=CDS|length=2970bp|location=Sequence derived from alignment at scaffold_11:482662..484516+ (Nannochloropsis oceanica)
ATGCGGTTTGCGCGAGGAGTGCCTCTGGGGGATATGGAGATAAGGCCGGA
TCCGGAAGCGGGGACTGTCGGGGGTGGGGGAGGGAAGACGGGGAGGCCGA
GGAGTGGTACAACTATTTCCTTCAAGCCTGACGCGGAGATTTTCAAGACG
GCCACAACGTTTGAGTTTGATCGGGTGTCGGGGAGATTGGATGAGCTGGC
GTACTTGAATGCAGGCATTAGGATTGTGATGGCCGATAAGAGAGGGGAGG
GACGGAGAGAGGAGTTCTTTCATGAGGGTGGGATTAGGGAGTATGTGGAG
TTGATAAAAATGGGGGTAACAGTCGAAGCGGCGCTGAGGTGGTCGAGGGA
TCAATATGATGATTTGTTGATCGGCTTTGCGAATGGGATCAGGACGGGGG
ATGGTGGCACTCACTTGGATGGGCTCAAAAGTGTGTTGACAAGGACGATC
AACAACATGGCGCGGAAAAGTGGGAAGCTTAAGGAGGGGAAGGATAATCT
ATCTGGTGATTTTGTTCGAGAAGGGCTTACGGCCGTCGTGAGTGTCAAGG
TTCCCGATCCTGAGTTTGAGGGACAAACCAAAAATAGGCTGGGTAACCCG
GAAGTACGTGGGATTGTAGACGCGATTATCGGCGAGAATTTGGTGAACAC
TTTTGAGTGGAACCCCAAGGTGCTTGGCGCCATTGTCGATAAAGCTATGT
CGGCCCAGCAAGCCGCGCAAGCTGCAAAAGCGGCCAGGGATATGGTGCGG
AGGAAGTCATTGTTGTCCAGCACGGTCTTACCGGGCAAGCTGGCGGATTG
CTCCTCGCGGGACCCGACTGAAAGCGAGATTTACATCGTGGAAGGTGACT
CTGCTGCAGGCAGCGCCAAGCAAGGGAGGGATCGTCGGACGCAAGCTATT
CTACCTCTGCGTGGAAAGATTTTGAATATTGAAAAGGCGGCCACGGAAAA
GATTTATCAAAACACGGAGTTGCAGGCGTTGATCTCAGCGTTGGGATTGG
GGATTAAAGGGAATGAGTTCGACCCGGCCACTCTGCGTTATCATCGCATA
ATGATCATGACAGATGCTGATGTGGATGGCTCGCATATTCGCATTTTGCT
CTTGACCTTCCTCTTTCGGTATCAGCGGGCGTTGGTTGAGAGAGGGTACA
TCTATATAGCCTGTCCACCGCTTTATAAGGTCACACAAGGGAAGAACATC
AAGTATGCTTACTCACAAGAAGAGCTTGAAGATGTGCAGGCTTCGTTTAC
AGGTAAGGCTGCCGTTTCCCTCCAGCGATTCAAGGGGTTGGGGGAGATGA
TGCCTACACAATTGTGGGAAACGACCATGAACCCCGAGACGAGGATATTG
AAGCAGGTGACGATTGAGGACGCGGCGGAGGCGGATAAGATGTTTATGCT
ACTGATGGGTGATGCGGTGGGTCCGAGAAAAGACTTCATCAATAGGAATG
CCGGGGCCATGGGGTTGGACGACCTTGACTTTTAGATGCGGTTTGCGCGA
GGAGTGCCTCTGGGGGATATGGAGATAAGGCCGGATCCGGAAGCGGGGAC
TGTCGGGGGTGGGGGAGGGAAGACGGGGAGGCCGAGGAGTGGTACAACTA
TTTCCTTCAAGCCTGACGCGGAGATTTTCAAGACGGCCACAACGTTTGAG
TTTGATCGGGTGTCGGGGAGATTGGATGAGCTGGCGTACTTGAATGCAGG
CATTAGGATTGTGATGGCCGATAAGAGAGGGGAGGGACGGAGAGAGGAGT
TCTTTCATGAGGGTGGGATTAGGGAGTATGTGGAGTTGATAAAAATGGGG
GTAACAGTCGAAGCGGCGCTGAGGTGGTCGAGGGATCAATATGATGATTT
GTTGATCGGCTTTGCGAATGGGATCAGGACGGGGGATGGTGGCACTCACT
TGGATGGGCTCAAAAGTGTGTTGACAAGGACGATCAACAACATGGCGCGG
AAAAGTGGGAAGCTTAAGGAGGGGAAGGATAATCTATCTGGTGATTTTGT
TCGAGAAGGGCTTACGGCCGTCGTGAGTGTCAAGGTTCCCGATCCTGAGT
TTGAGGGACAAACCAAAAATAGGCTGGGTAACCCGGAAGTACGTGGGATT
GTAGACGCGATTATCGGCGAGAATTTGGTGAACACTTTTGAGTGGAACCC
CAAGGTGCTTGGCGCCATTGTCGATAAAGCTATGTCGGCCCAGCAAGCCG
CGCAAGCTGCAAAAGCGGCCAGGGATATGGTGCGGAGGAAGTCATTGTTG
TCCAGCACGGTCTTACCGGGCAAGCTGGCGGATTGCTCCTCGCGGGACCC
GACTGAAAGCGAGATTTACATCGTGGAAGGTGACTCTGCTGCAGGCAGCG
CCAAGCAAGGGAGGGATCGTCGGACGCAAGCTATTCTACCTCTGCGTGGA
AAGATTTTGAATATTGAAAAGGCGGCCACGGAAAAGATTTATCAAAACAC
GGAGTTGCAGGCGTTGATCTCAGCGTTGGGATTGGGGATTAAAGGGAATG
AGTTCGACCCGGCCACTCTGCGTTATCATCGCATAATGATCATGACAGAT
GCTGATGTGGATGGCTCGCATATTCGCATTTTGCTCTTGACCTTCCTCTT
TCGGTATCAGCGGGCGTTGGTTGAGAGAGGGTACATCTATATAGCCTGTC
CACCGCTTTATAAGGTCACACAAGGGAAGAACATCAAGTATGCTTACTCA
CAAGAAGAGCTTGAAGATGTGCAGGCTTCGTTTACAGGTAAGGCTGCCGT
TTCCCTCCAGCGATTCAAGGGGTTGGGGGAGATGATGCCTACACAATTGT
GGGAAACGACCATGAACCCCGAGACGAGGATATTGAAGCAGGTGACGATT
GAGGACGCGGCGGAGGCGGATAAGATGTTTATGCTACTGATGGGTGATGC
GGTGGGTCCGAGAAAAGACTTCATCAATAGGAATGCCGGGGCCATGGGGT
TGGACGACCTTGACTTTTAG

Synonyms

Publications