jgi.p|Nanoce1779_2|63733, mRNA_5329 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|63733
Unique NamemRNA_5329
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1484
Alignment locationscaffold_13:181326..183003 -

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Properties
Property NameValue
TranscriptId63819
TrackFilteredModels2
ProteinId63733
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:181326..183003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|63733gene_5329Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|63733mRNA_5329-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5329CDS_5329Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5329 ID=mRNA_5329|Name=jgi.p|Nanoce1779_2|63733|organism=Nannochloropsis oceanica|type=mRNA|length=1484bp
CTATCTTCTTCCTTTATTTCTCTTTCCCTGCTTCACTTCTTAACTTTGCT
TTTGTCGTACTTGCTTCCCTGCTTCAATTGATCGAGCTTATGTACATCCG
ACTCGGTGAATACCCTAGTCCCTGGAGACACTCGCTCACCCTCCCCTCCC
TCCGGTTCTCCTTCCTAGGCAAGCTCCCAAAAGACAACCGAATCCCCTGG
CGACGGGACAGCAATATTGCTGACGGTTTTTTGAGTCATCATGACCTCAG
CGGGGGGTATTATGACGCCGGCGATTACATCATTTTTGGGTGGCCCTTGG
CATCGGCCACCACAGTGCTAGCATGGGGACTGCTTGAATATGAGGATGCC
TACACACAAACAGGGGAACTGGGGCATACGCTCGCCACGGTAAAATGGCC
GTTGGACTGGCTTTTGAAAGCTCACGTAGCTCCAGACACGCTCTACGTGC
AGGTGGGGGATGGGAAGGTTGAACACGAATATTGGGGCAGGCCCGAATTC
GAGCGCAAACCCCGGCCGGCTTACAAGGTCAATGCTACTCATGGCGGGAC
GGAGCCCATGGCCGACGCCGCCGCTGCTATGGCTGCCGGATACCTTGTCT
TTCAACACCATGACCCTGTCTACGCGCAGACGCTGCTGTTTCATGCACAG
CAGCTCTTTGAGGCTGCGCTTGCCCACCCAGTAACATTTACTTTGTCAGC
GCCTTTTTACGAGAGTAGCGGTTTCAATGATGAGATCGCTTGGGCCGCCG
CGTGGTTGTACAAGGCCACAGGTACGAACGCCTACCTAACTCAGGCAATG
GAATTCGCCGAGCTGTTTGAGCCAGACGACGCTGGGGCTTTTGGGTGGGA
TAACAAGAATGCGGGCGTTCACCTCCTGCTCTACAAGCTTACCAAATTGC
AGAAATACGCCGATAACTTTACAAAATACATGTCCTCTTGGCTCCCCGGT
AGTAGCAGCAGCATCAAACGGACCCCCAAAGGGCTCGCGTATTACATGAG
TTGGGGACCTTTGAGGTGGGCGGCGAACACCGCTTTTTTAGCGTTGTTGG
CGGCAGATTTCGGGCTGGCTGTGCAGCCATATCGTCGATTTGCTCGATCA
CAGATTCATTATATTTTGGGAGATAACGGTGGATTTAGCTATGTCGTGGG
GTTTGGGCAAAAGGGTCCCAGGGCGATCCATAACAGGGGGGCGAGCTGTG
GTAGGCATGGGTGTGAGTGTAATAATCTGCCAAGTGCGAATACGGGGCTT
TGGTGGGGGGCCCGGATGAGAAGGATATGTACTTTGATGACTGCCACGAT
TACAAGCACAGTGAGTGTAGTGTTGACTACAATGCGGGGTACCAGGGGGC
GGTCGCCGGGTTGAAGCATCTGAGTTTGATGGGGTTGCTTGATTCATTTG
AGTGAGAATGTGTTTAGAGTGTTGCCGTCGGCGTATCTTCTCAGGTAGAG
AGAAAGCAAGAAGTAGACAAGAAAGGAGGAGGAG
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protein sequence of jgi.p|Nanoce1779_2|63733

>mRNA_5329-protein ID=mRNA_5329-protein|Name=jgi.p|Nanoce1779_2|63733|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp
MYIRLGEYPSPWRHSLTLPSLRFSFLGKLPKDNRIPWRRDSNIADGFLSH
HDLSGGYYDAGDYIIFGWPLASATTVLAWGLLEYEDAYTQTGELGHTLAT
VKWPLDWLLKAHVAPDTLYVQVGDGKVEHEYWGRPEFERKPRPAYKVNAT
HGGTEPMADAAAAMAAGYLVFQHHDPVYAQTLLFHAQQLFEAALAHPVTF
TLSAPFYESSGFNDEIAWAAAWLYKATGTNAYLTQAMEFAELFEPDDAGA
FGWDNKNAGVHLLLYKLTKLQKYADNFTKYMSSWLPGSSSSIKRTPKGLA
YYMSWGPLRWAANTAFLALLAADFGLAVQPYRRFARSQIHYILGDNGGFS
YVVGFGQKGPRAIHNRGASCGRHGCECNNLPSANTGLWWGARMRRICTLM
TATITSTVSVVLTTMRGTRGRSPG*
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mRNA from alignment at scaffold_13:181326..183003-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5329 ID=mRNA_5329|Name=jgi.p|Nanoce1779_2|63733|organism=Nannochloropsis oceanica|type=mRNA|length=1678bp|location=Sequence derived from alignment at scaffold_13:181326..183003- (Nannochloropsis oceanica)
CTATCTTCTTCCTTTATTTCTCTTTCCCTGCTTCACTTCTTAACTTTGCT
TTTGTCGTACTTGCTTCCCTGCTTCAATTGATCGAGCTTATGTACATCCG
ACTCGGTGAATACCCTAGTCCCTGGAGACACTCGCTCACCCTCCCCTCCC
TCCGGTTCTCCTTCCTAGGCAAGCTCCCAAAAGACAACCGAATCCCCTGG
CGACGGGACAGCAATATTGCTGACGGTTTTTTGAGTCATCATGACCTCAG
CGGGGGGTATTATGACGCCGGCGATTACATCATTTTTGGGTGGCCCTTGG
CATCGGCCACCACAGTGCTAGCATGGGGACTGCTTGAATATGAGGATGCC
TACACACAAACAGGGGAACTGGGGCATACGCTCGCCACGGTAAAATGGCC
GTTGGACTGGCTTTTGAAAGCTCACGTAGCTCCAGACACGCTCTACGTGC
AGGTGGGGGATGGGAAGGTTGAACACGAATATTGGGGCAGGTAGGTCAAC
AGCGGGGGGATATAGGAGGGAGGGAGGGAGAGAGGGAGAAGGGAGGGAGG
GAGGGATGCCGAGGGGACAGCATGCCATGCACACACTCTCTTTCTCTCTC
CCCTCTTCCACACACACTCTCGCATGCACACAGACACGCAAACACACTGA
CATCTCTTTTCCTCACTCTTAACTCTCTCCTCAGGCCCGAATTCGAGCGC
AAACCCCGGCCGGCTTACAAGGTCAATGCTACTCATGGCGGGACGGAGCC
CATGGCCGACGCCGCCGCTGCTATGGCTGCCGGATACCTTGTCTTTCAAC
ACCATGACCCTGTCTACGCGCAGACGCTGCTGTTTCATGCACAGCAGCTC
TTTGAGGCTGCGCTTGCCCACCCAGTAACATTTACTTTGTCAGCGCCTTT
TTACGAGAGTAGCGGTTTCAATGATGAGATCGCTTGGGCCGCCGCGTGGT
TGTACAAGGCCACAGGTACGAACGCCTACCTAACTCAGGCAATGGAATTC
GCCGAGCTGTTTGAGCCAGACGACGCTGGGGCTTTTGGGTGGGATAACAA
GAATGCGGGCGTTCACCTCCTGCTCTACAAGCTTACCAAATTGCAGAAAT
ACGCCGATAACTTTACAAAATACATGTCCTCTTGGCTCCCCGGTAGTAGC
AGCAGCATCAAACGGACCCCCAAAGGGCTCGCGTATTACATGAGTTGGGG
ACCTTTGAGGTGGGCGGCGAACACCGCTTTTTTAGCGTTGTTGGCGGCAG
ATTTCGGGCTGGCTGTGCAGCCATATCGTCGATTTGCTCGATCACAGATT
CATTATATTTTGGGAGATAACGGTGGATTTAGCTATGTCGTGGGGTTTGG
GCAAAAGGGTCCCAGGGCGATCCATAACAGGGGGGCGAGCTGTGGTAGGC
ATGGGTGTGAGTGTAATAATCTGCCAAGTGCGAATACGGGGCTTTGGTGG
GGGGCCCGGATGAGAAGGATATGTACTTTGATGACTGCCACGATTACAAG
CACAGTGAGTGTAGTGTTGACTACAATGCGGGGTACCAGGGGGCGGTCGC
CGGGTTGAAGCATCTGAGTTTGATGGGGTTGCTTGATTCATTTGAGTGAG
AATGTGTTTAGAGTGTTGCCGTCGGCGTATCTTCTCAGGTAGAGAGAAAG
CAAGAAGTAGACAAGAAAGGAGGAGGAG
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Coding sequence (CDS) from alignment at scaffold_13:181326..183003-

>mRNA_5329 ID=mRNA_5329|Name=jgi.p|Nanoce1779_2|63733|organism=Nannochloropsis oceanica|type=CDS|length=2550bp|location=Sequence derived from alignment at scaffold_13:181326..183003- (Nannochloropsis oceanica)
GCCCGAATTCGAGCGCAAACCCCGGCCGGCTTACAAGGTCAATGCTACTC
ATGGCGGGACGGAGCCCATGGCCGACGCCGCCGCTGCTATGGCTGCCGGA
TACCTTGTCTTTCAACACCATGACCCTGTCTACGCGCAGACGCTGCTGTT
TCATGCACAGCAGCTCTTTGAGGCTGCGCTTGCCCACCCAGTAACATTTA
CTTTGTCAGCGCCTTTTTACGAGAGTAGCGGTTTCAATGATGAGATCGCT
TGGGCCGCCGCGTGGTTGTACAAGGCCACAGGTACGAACGCCTACCTAAC
TCAGGCAATGGAATTCGCCGAGCTGTTTGAGCCAGACGACGCTGGGGCTT
TTGGGTGGGATAACAAGAATGCGGGCGTTCACCTCCTGCTCTACAAGCTT
ACCAAATTGCAGAAATACGCCGATAACTTTACAAAATACATGTCCTCTTG
GCTCCCCGGTAGTAGCAGCAGCATCAAACGGACCCCCAAAGGGCTCGCGT
ATTACATGAGTTGGGGACCTTTGAGGTGGGCGGCGAACACCGCTTTTTTA
GCGTTGTTGGCGGCAGATTTCGGGCTGGCTGTGCAGCCATATCGTCGATT
TGCTCGATCACAGATTCATTATATTTTGGGAGATAACGGTGGATTTAGCT
ATGTCGTGGGGTTTGGGCAAAAGGGTCCCAGGGCGATCCATAACAGGGGG
GCGAGCTGTGGTAGGCATGGGTGTGAGTGTAATAATCTGCCAAGTGCGAA
TACGGGGCTTTGGTGGGGGGCCCGGATGAGAAGGATATGTACTTTGATGA
CTGCCACGATTACAAGCACAGTGAGTGTAGTGTTGACTACAATGCGGGGT
ACCAGGGGGCGGTCGCCGGGTTGAATGTACATCCGACTCGGTGAATACCC
TAGTCCCTGGAGACACTCGCTCACCCTCCCCTCCCTCCGGTTCTCCTTCC
TAGGCAAGCTCCCAAAAGACAACCGAATCCCCTGGCGACGGGACAGCAAT
ATTGCTGACGGTTTTTTGAGTCATCATGACCTCAGCGGGGGGTATTATGA
CGCCGGCGATTACATCATTTTTGGGTGGCCCTTGGCATCGGCCACCACAG
TGCTAGCATGGGGACTGCTTGAATATGAGGATGCCTACACACAAACAGGG
GAACTGGGGCATACGCTCGCCACGGTAAAATGGCCGTTGGACTGGCTTTT
GAAAGCTCACGTAGCTCCAGACACGCTCTACGTGCAGGTGGGGGATGGGA
AGGTTGAACACGAATATTGGGGCAGGCCCGAATTCGAGCGCAAACCCCGG
CCGGCTTACAAGGTCAATGCTACTCATGGCGGGACGGAGCCCATGGCCGA
CGCCGCCGCTGCTATGGCTGCCGGATACCTTGTCTTTCAACACCATGACC
CTGTCTACGCGCAGACGCTGCTGTTTCATGCACAGCAGCTCTTTGAGGCT
GCGCTTGCCCACCCAGTAACATTTACTTTGTCAGCGCCTTTTTACGAGAG
TAGCGGTTTCAATGATGAGATCGCTTGGGCCGCCGCGTGGTTGTACAAGG
CCACAGGTACGAACGCCTACCTAACTCAGGCAATGGAATTCGCCGAGCTG
TTTGAGCCAGACGACGCTGGGGCTTTTGGGTGGGATAACAAGAATGCGGG
CGTTCACCTCCTGCTCTACAAGCTTACCAAATTGCAGAAATACGCCGATA
ACTTTACAAAATACATGTCCTCTTGGCTCCCCGGTAGTAGCAGCAGCATC
AAACGGACCCCCAAAGGGCTCGCGTATTACATGAGTTGGGGACCTTTGAG
GTGGGCGGCGAACACCGCTTTTTTAGCGTTGTTGGCGGCAGATTTCGGGC
TGGCTGTGCAGCCATATCGTCGATTTGCTCGATCACAGATTCATTATATT
TTGGGAGATAACGGTGGATTTAGCTATGTCGTGGGGTTTGGGCAAAAGGG
TCCCAGGGCGATCCATAACAGGGGGGCGAGCTGTGGTAGGCATGGGTGTG
AGTGTAATAATCTGCCAAGTGCGAATACGGGGCTTTGGTGGGGGGCCCGG
ATGAGAAGGATATGTACTTTGATGACTGCCACGATTACAAGCACAGTGAG
TGTAGTGTTGACTACAATGCGGGGTACCAGGGGGCGGTCGCCGGGTTGAA
TGTACATCCGACTCGGTGAATACCCTAGTCCCTGGAGACACTCGCTCACC
CTCCCCTCCCTCCGGTTCTCCTTCCTAGGCAAGCTCCCAAAAGACAACCG
AATCCCCTGGCGACGGGACAGCAATATTGCTGACGGTTTTTTGAGTCATC
ATGACCTCAGCGGGGGGTATTATGACGCCGGCGATTACATCATTTTTGGG
TGGCCCTTGGCATCGGCCACCACAGTGCTAGCATGGGGACTGCTTGAATA
TGAGGATGCCTACACACAAACAGGGGAACTGGGGCATACGCTCGCCACGG
TAAAATGGCCGTTGGACTGGCTTTTGAAAGCTCACGTAGCTCCAGACACG
CTCTACGTGCAGGTGGGGGATGGGAAGGTTGAACACGAATATTGGGGCAG
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Synonyms
Publications