jgi.p|Nanoce1779_2|592764, mRNA_5505 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592764
Unique NamemRNA_5505
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length437
Alignment locationscaffold_13:582392..582828 +

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Properties
Property NameValue
TranscriptId592850
TrackFilteredModels2
ProteinId592764
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:582392..582828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592764gene_5505Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592764mRNA_5505-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5505CDS_5505Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5505 ID=mRNA_5505|Name=jgi.p|Nanoce1779_2|592764|organism=Nannochloropsis oceanica|type=mRNA|length=437bp
CAGTGCATTTTACTCCGTGGTACGCCTCAATCGCCTGGTCTCCCTTGGTG
TAAAGCCGATAACCTCCTCTCCCCTGCTGCTCTCCATCATCAAGCGCGAC
TTCCCATCGACTCTTCACACTCCCAGCTCAAGCTGGTACAAGAAATGCCA
CCACAGACCAACCCCAACACGGGAAAGATTCTTGTCTCTTTTTGCTTGGG
CTTGACAGCCGTCGGACTTGGCGTGGCCACCGTCTACTTGCCCTATTATT
CGAAAGACGCGAAGGCTCGGGTATCGCGCGTCCGTCAAGGCAGAATAGGG
AAAAGAGACGATGATAGTCAGTCGCAGCCGGTTACAGTTACCACTATCAA
TAAAAGCAATCAAGGAGGAATTCCTGCAGGAAGTATGTGGAAAAACATGA
AGGACAAGTAAAACCAATGGAAAGGAAAGGCGATTGT
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protein sequence of jgi.p|Nanoce1779_2|592764

>mRNA_5505-protein ID=mRNA_5505-protein|Name=jgi.p|Nanoce1779_2|592764|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MPPQTNPNTGKILVSFCLGLTAVGLGVATVYLPYYSKDAKARVSRVRQGR
IGKRDDDSQSQPVTVTTINKSNQGGIPAGSMWKNMKDK*
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mRNA from alignment at scaffold_13:582392..582828+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5505 ID=mRNA_5505|Name=jgi.p|Nanoce1779_2|592764|organism=Nannochloropsis oceanica|type=mRNA|length=437bp|location=Sequence derived from alignment at scaffold_13:582392..582828+ (Nannochloropsis oceanica)
CAGTGCATTTTACTCCGTGGTACGCCTCAATCGCCTGGTCTCCCTTGGTG
TAAAGCCGATAACCTCCTCTCCCCTGCTGCTCTCCATCATCAAGCGCGAC
TTCCCATCGACTCTTCACACTCCCAGCTCAAGCTGGTACAAGAAATGCCA
CCACAGACCAACCCCAACACGGGAAAGATTCTTGTCTCTTTTTGCTTGGG
CTTGACAGCCGTCGGACTTGGCGTGGCCACCGTCTACTTGCCCTATTATT
CGAAAGACGCGAAGGCTCGGGTATCGCGCGTCCGTCAAGGCAGAATAGGG
AAAAGAGACGATGATAGTCAGTCGCAGCCGGTTACAGTTACCACTATCAA
TAAAAGCAATCAAGGAGGAATTCCTGCAGGAAGTATGTGGAAAAACATGA
AGGACAAGTAAAACCAATGGAAAGGAAAGGCGATTGT
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Coding sequence (CDS) from alignment at scaffold_13:582392..582828+

>mRNA_5505 ID=mRNA_5505|Name=jgi.p|Nanoce1779_2|592764|organism=Nannochloropsis oceanica|type=CDS|length=267bp|location=Sequence derived from alignment at scaffold_13:582392..582828+ (Nannochloropsis oceanica)
ATGCCACCACAGACCAACCCCAACACGGGAAAGATTCTTGTCTCTTTTTG
CTTGGGCTTGACAGCCGTCGGACTTGGCGTGGCCACCGTCTACTTGCCCT
ATTATTCGAAAGACGCGAAGGCTCGGGTATCGCGCGTCCGTCAAGGCAGA
ATAGGGAAAAGAGACGATGATAGTCAGTCGCAGCCGGTTACAGTTACCAC
TATCAATAAAAGCAATCAAGGAGGAATTCCTGCAGGAAGTATGTGGAAAA
ACATGAAGGACAAGTAA
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Synonyms
Publications