jgi.p|Nanoce1779_2|75376, mRNA_5913 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|75376
Unique NamemRNA_5913
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length605
Alignment locationscaffold_14:38058..38940 +

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Properties
Property NameValue
TranscriptId75462
TrackFilteredModels2
ProteinId75376
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:38058..38940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|75376gene_5913Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|75376mRNA_5913-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5913CDS_5913Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5913 ID=mRNA_5913|Name=jgi.p|Nanoce1779_2|75376|organism=Nannochloropsis oceanica|type=mRNA|length=605bp
CCTCCCTCCCGGCACCTCAGCGGTACCCCCCCCCCCCCCCTCCAGAGCTT
GAAATGCCCGAAGATATCTACGTTATCGCCGACAGCGCCAACTTATTCAG
TGGCGCGCAGATGGTGGAGGGGAAGAGAAATATGGACATAAAGGTCAACC
TCGCCACCACCCTCCCGCTCATTGACGACGCCCGGCCGATCAAGCAACGC
ATCGTCGTGGCCTCCTTTCCGGAACGGAACAACCGCATGTGGCGATATTT
TGAGCAACGCCGCTATCAGATTTACGTGAAAGGAGAGGAGACCGAGGTGG
ACGATGAACTCGCAGCGCGGATTTGCGGTGTTTTGACGCATGCACCCGAC
GAGACAGGCGGTAGGCGAGTGATGGTATTTGTGACGGGCGATGGGAACGC
TCACAAAGGCCAACACTCTTTCCCTCAGCTCGTTATTCTGGCGCTGCAGC
GAGGGTAAGCCCCCCTTTCCTTTCTTTGGCAATGCTCTTCTTTCCCTCTT
TCTCACAACCCCTTATTTTTGCCATGCACGGCCACGGGATAAAAAAGATA
TTTAAGCCACAGCCTATTTCCTTAATTTCAGCTTTCCACTCTCTACACCC
TCACA
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protein sequence of jgi.p|Nanoce1779_2|75376

>mRNA_5913-protein ID=mRNA_5913-protein|Name=jgi.p|Nanoce1779_2|75376|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MPEDIYVIADSANLFSGAQMVEGKRNMDIKVNLATTLPLIDDARPIKQRI
VVASFPERNNRMWRYFEQRRYQIYVKGEETEVDDELAARICGVLTHAPDE
TGGRRVMVFVTGDGNAHKGQHSFPQLVILALQRG*
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mRNA from alignment at scaffold_14:38058..38940+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5913 ID=mRNA_5913|Name=jgi.p|Nanoce1779_2|75376|organism=Nannochloropsis oceanica|type=mRNA|length=883bp|location=Sequence derived from alignment at scaffold_14:38058..38940+ (Nannochloropsis oceanica)
CCTCCCTCCCGGCACCTCAGCGGTACCCCCCCCCCCCCCCTCCAGAGCTT
GAAATGCCCGAAGATATCTACGTTATCGCCGACAGCGCCAACTTATTCAG
TGGCGCGCAGATGGTGGAGGGGAAGAGAAATATGGACATAAAGGTATGCA
CGCCCTCCCTTCCTTCCTTCCTCCCTCACTCCTTTCTTTCGGTGTGTCTG
AGATCTGTGCAGATATGAATTCATTTAATTATTCTTTTTAGTTAAATTAA
TCTATCGATTTTCAAAATAATACCAATTTAAACATTTTCCCACCAAATTT
ATTCATTTGTTAAAGTTACGATTTATTTATTCATTCATCAAAATAACAAA
TGATTAATTTATTCGACAGGTCAACCTCGCCACCACCCTCCCGCTCATTG
ACGACGCCCGGCCGATCAAGCAACGCATCGTCGTGGCCTCCTTTCCGGAA
CGGAACAACCGCATGTGGCGATATTTTGAGCAACGCCGCTATCAGATTTA
CGTGAAAGGAGAGGAGACCGAGGTGGACGATGAACTCGCAGCGCGGATTT
GCGGTGTTTTGACGCATGCACCCGACGAGACAGGCGGTAGGCGAGTGATG
GTATTTGTGACGGGCGATGGGAACGCTCACAAAGGCCAACACTCTTTCCC
TCAGCTCGTTATTCTGGCGCTGCAGCGAGGGTAAGCCCGCCCTTCCCTCC
CTCCCTCCCTCCTCCCTCCTCCCTCCCTTTCTCCCTCATCCCCTTTCCTT
TCTTTGGCAATGCTCTTCTTTCCCTCTTTCTCACAACCCCTTATTTTTGC
CATGCACGGCCACGGGATAAAAAAGATATTTAAGCCACAGCCTATTTCCT
TAATTTCAGCTTTCCACTCTCTACACCCTCACA
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Coding sequence (CDS) from alignment at scaffold_14:38058..38940+

>mRNA_5913 ID=mRNA_5913|Name=jgi.p|Nanoce1779_2|75376|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_14:38058..38940+ (Nannochloropsis oceanica)
ATGCCCGAAGATATCTACGTTATCGCCGACAGCGCCAACTTATTCAGTGG
CGCGCAGATGGTGGAGGGGAAGAGAAATATGGACATAAAGGTCAACCTCG
CCACCACCCTCCCGCTCATTGACGACGCCCGGCCGATCAAGCAACGCATC
GTCGTGGCCTCCTTTCCGGAACGGAACAACCGCATGTGGCGATATTTTGA
GCAACGCCGCTATCAGATTTACGTGAAAGGAGAGGAGACCGAGGTGGACG
ATGAACTCGCAGCGCGGATTTGCGGTGTTTTGACGCATGCACCCGACGAG
ACAGGCGGTAGGCGAGTGATGGTATTTGTGACGGGCGATGGGAACGCTCA
CAAAGGCCAACACTCTTTCCCTCAGCTCGTTATTCTGGCGCTGCAGCGAG
GGTAAATGCCCGAAGATATCTACGTTATCGCCGACAGCGCCAACTTATTC
AGTGGCGCGCAGATGGTGGAGGGGAAGAGAAATATGGACATAAAGGTCAA
CCTCGCCACCACCCTCCCGCTCATTGACGACGCCCGGCCGATCAAGCAAC
GCATCGTCGTGGCCTCCTTTCCGGAACGGAACAACCGCATGTGGCGATAT
TTTGAGCAACGCCGCTATCAGATTTACGTGAAAGGAGAGGAGACCGAGGT
GGACGATGAACTCGCAGCGCGGATTTGCGGTGTTTTGACGCATGCACCCG
ACGAGACAGGCGGTAGGCGAGTGATGGTATTTGTGACGGGCGATGGGAAC
GCTCACAAAGGCCAACACTCTTTCCCTCAGCTCGTTATTCTGGCGCTGCA
GCGAGGGTAA
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Synonyms
Publications