jgi.p|Nanoce1779_2|556912, mRNA_6066 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|556912
Unique Name	mRNA_6066
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1176
Alignment location	scaffold_14:447978..449589 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	556998
Track	FilteredModels2
ProteinId	556912

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:447978..449589 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|556912	gene_6066	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|556912	mRNA_6066-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6066	CDS_6066	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:447978..449589+
coding sequence from alignment at scaffold_14:447978..449589+

mRNA sequence

>mRNA_6066 ID=mRNA_6066|Name=jgi.p|Nanoce1779_2|556912|organism=Nannochloropsis oceanica|type=mRNA|length=1176bp
ATGGACGATGAGGGTGGCAGGGAGGGAAGGAGGGAAGGAGGGAGCGGGAG
CAGCTTGGGAGGGGAAACACCCAGAGGAATATTGCTGCCTACAACGGCAG
TTGCCCACCCGGGGGGGAGGGAGACTAATCCAGTGCAAAGAGATGAGGAG
GGAAGGAGGGAAGGAGGAAGGACGAAAGAAAGAAAGGGGTTGGGGTGGTC
GTGTGGTGTGATATCCCTGCAGGGTATCCGTAACCACCAAGAAGACCAGT
ACACTACCATTCCGGATTTGAGTCTCGAGGAGGGGAAGGAGAAAAAGGAG
GAGGAAGCACAAAGTTTCTACGCCATCTTCGACGGGCATTGCGGCGTGCG
GGCGGCGCGGTATGCCCGGGAATTAACGCACCATTATCTGGTTGCTGATC
CCCTGTTTCCCTCCTTTCCGGGGAAAGCCATGACAAATGTGTGTCGACGG
TTGGATCGGGAGGTCCTGGAGATCTGTGAGCGGGAGGGCTTGTATTGCGG
GACAACGGCAATTATGGTGTTGATACGAGGACGGACGGTGTATGTCGGGA
ATGTGGGGGATTGTGCGGCAGTCATGTGTAGGGGAGGGGTGGCCTTGGCT
CTTTCGCAGGCCCAAACGCCGGGGAGGCCCGACGAAACCCGGAGGATCGA
GGGGGCGAATGGATGGGTGACGACGGAACGGGAGCTGTTTGTGGCGCAGT
TGCACCGGATGGATTTGGCCGACCCGAGTATTGCCAGTGGGGTGGAGAAG
AGGGTAACGTGGGTGACGATTTATAGGGTGTGTGGGGAGCTGAGTGTGAG
TAGGAGTATTGGTGATCCAGATTTCAAGGGAGGGGTGGAGGGAGGGGAGA
GCGATTTTCCCTTTCTGTACCCACCCGGGCATTCCCGGATCTTTTCCGCG
GACCTTGTCATCGCAGACCCGGAGGTCGTTCAAGCGGAGGTACAAGATGA
CGACACCTTCATGTTGCTTGCCTGCGATGGCTTCTGGGATGTGATGGACG
CCGAGGAAGCAGTGGCACGTGGGGAGGAGCTGCTGGAGAAGGGCTTGACG
GCCACGGAGGCAGCAGCGCAGTTGGGGAATTTGGCGTTACGAATGGGGAG
CTCGGATAATGTGACGGTGGTGTTGGTGGTGTTCGAGCGCGAGGGGGAGG
GAGGGGGAGGAGGGGGGGAAAGGTAG

protein sequence of jgi.p|Nanoce1779_2|556912

>mRNA_6066-protein ID=mRNA_6066-protein|Name=jgi.p|Nanoce1779_2|556912|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MDDEGGREGRREGGSGSSLGGETPRGILLPTTAVAHPGGRETNPVQRDEE
GRREGGRTKERKGLGWSCGVISLQGIRNHQEDQYTTIPDLSLEEGKEKKE
EEAQSFYAIFDGHCGVRAARYARELTHHYLVADPLFPSFPGKAMTNVCRR
LDREVLEICEREGLYCGTTAIMVLIRGRTVYVGNVGDCAAVMCRGGVALA
LSQAQTPGRPDETRRIEGANGWVTTERELFVAQLHRMDLADPSIASGVEK
RVTWVTIYRVCGELSVSRSIGDPDFKGGVEGGESDFPFLYPPGHSRIFSA
DLVIADPEVVQAEVQDDDTFMLLACDGFWDVMDAEEAVARGEELLEKGLT
ATEAAAQLGNLALRMGSSDNVTVVLVVFEREGEGGGGGGER*

mRNA from alignment at scaffold_14:447978..449589+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6066 ID=mRNA_6066|Name=jgi.p|Nanoce1779_2|556912|organism=Nannochloropsis oceanica|type=mRNA|length=1612bp|location=Sequence derived from alignment at scaffold_14:447978..449589+ (Nannochloropsis oceanica)
ATGGACGATGAGGGTGGCAGGGAGGGAAGGAGGGAAGGAGGGAGCGGGAG
CAGCTTGGGAGGGGAAACACCCAGAGGAATATTGCTGCCTACAACGGCAG
TTGCCCACCCGGGGGGGAGGGAGACTAATCCAGTGCAAAGAGATGAGGAG
GGAAGGAGGGAAGGAGGAAGGACGAAAGAAAGAAAGGGGTTGGGGTGGTC
GTGTGGTGTGATATCCCTGCAGGGTATCCGTAACCACCAAGAAGACCAGT
ACACTACCATTCCGGATTTGAGTCTCGTGATAGAAGCGGGGAGAGTCCAA
AGAGGGGAAGAGAGTGCAGATGAAGCGAAGAAGGAGGAGGGGAAGGAGAA
AAAGGAGGAGGAAGCACAAAGTTTCTACGCCATCTTCGACGGGCATTGCG
GCGTGCGGGCGGCGCGGTATGCCCGGGAATTAACGCACCATTATCTGGTT
GCTGATCCCCTGTTTCCCTCCTTTCCGGGGAAAGCCATGACAAATGTGTG
TCGACGGTTGGATCGGGAGGTCCTGGAGATCTGTGAGCGGGAGGGCTTGT
ATTGCGGGACAACGGCAATTATGGTGTTGATACGAGGACGGACGGTGTAT
GTCGGGAATGTGGGGGATTGTGCGGCAGTCATGTGTAGGGGAGGGGTGGC
CTTGGCTCTTTCGCAGGCCCAAACGCCGGGGAGGCCCGACGAAACCCGGA
GGATCGAGGGGGCGAATGGATGGGTGACGACGGAACGGGAGCTGTTTGTG
GCGCAGTTGCACCGGATGGATTTGGCCGACCCGAGTATTGCCAGTGGGGT
GGAGAAGAGGGTAACGTGGGTGACGATTTATAGGGTGTGTGGGGAGCTGA
GTGTGAGTAGGAGTATTGGTGATCCAGATTTCAAGGGGTTTGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGTGGAGGGGGAGGAGGAGGAACAGAGCCTGG
AGTACCAAGAAGGGTGGCAGCTGGTGCTGGGAGTGGTGCAGGAGAGGAAG
GGAAGGAGGGGCAGGAGGAGAGAAGAGATACTTCTGGTATTGCTGCTGCT
GCTGCTGCAGTTGCTGACATGGAAGGGGAGGAGGTGGCTGGCGGTGAGGG
GGAGGGAGGAGGAGACAGAGGGGTGGAGGGAGGGGAGAGCGATTTTCCCT
TTCTGTACCCACCCGGGCATTCCCGGATCTTTTCCGCGGACCTTGTCATC
GCAGACCCGGAGGTCGTTCAAGCGGAGGTACAAGATGTAAGTGGTGGAGG
GAGGGAGGGAGGGAAGTAGGAAGGGAGGGAAGGTCTGAGTTTGGAACACT
CTTGGGCCTATTTCGGTATGAATGCTTACGCATATATATCTTCCTCCATT
CAATTCTCCTTCCTTCCGTCCCTTTTCTGTTCAGGACGACACCTTCATGT
TGCTTGCCTGCGATGGCTTCTGGGATGTGATGGACGCCGAGGAAGCAGTG
GCACGTGGGGAGGAGCTGCTGGAGAAGGGCTTGACGGCCACGGAGGCAGC
AGCGCAGTTGGGGAATTTGGCGTTACGAATGGGGAGCTCGGATAATGTGA
CGGTGGTGTTGGTGGTGTTCGAGCGCGAGGGGGAGGGAGGGGGAGGAGGG
GGGGAAAGGTAG

Coding sequence (CDS) from alignment at scaffold_14:447978..449589+

>mRNA_6066 ID=mRNA_6066|Name=jgi.p|Nanoce1779_2|556912|organism=Nannochloropsis oceanica|type=CDS|length=4704bp|location=Sequence derived from alignment at scaffold_14:447978..449589+ (Nannochloropsis oceanica)
ATGGACGATGAGGGTGGCAGGGAGGGAAGGAGGGAAGGAGGGAGCGGGAG
CAGCTTGGGAGGGGAAACACCCAGAGGAATATTGCTGCCTACAACGGCAG
TTGCCCACCCGGGGGGGAGGGAGACTAATCCAGTGCAAAGAGATGAGGAG
GGAAGGAGGGAAGGAGGAAGGACGAAAGAAAGAAAGGGGTTGGGGTGGTC
GTGTGGTGTGATATCCCTGCAGGGTATCCGTAACCACCAAGAAGACCAGT
ACACTACCATTCCGGATTTGAGTCTCGAGGAGGGGAAGGAGAAAAAGGAG
GAGGAAGCACAAAGTTTCTACGCCATCTTCGACGGGCATTGCGGCGTGCG
GGCGGCGCGGTATGCCCGGGAATTAACGCACCATTATCTGGTTGCTGATC
CCCTGTTTCCCTCCTTTCCGGGGAAAGCCATGACAAATGTGTGTCGACGG
TTGGATCGGGAGGTCCTGGAGATCTGTGAGCGGGAGGGCTTGTATTGCGG
GACAACGGCAATTATGGTGTTGATACGAGGACGGACGGTGTATGTCGGGA
ATGTGGGGGATTGTGCGGCAGTCATGTGTAGGGGAGGGGTGGCCTTGGCT
CTTTCGCAGGCCCAAACGCCGGGGAGGCCCGACGAAACCCGGAGGATCGA
GGGGGCGAATGGATGGGTGACGACGGAACGGGAGCTGTTTGTGGCGCAGT
TGCACCGGATGGATTTGGCCGACCCGAGTATTGCCAGTGGGGTGGAGAAG
AGGGTAACGTGGGTGACGATTTATAGGGTGTGTGGGGAGCTGAGTGTGAG
TAGGAGTATTGGTGATCCAGATTTCAAGGGAGGGGTGGAGGGAGGGGAGA
GCGATTTTCCCTTTCTGTACCCACCCGGGCATTCCCGGATCTTTTCCGCG
GACCTTGTCATCGCAGACCCGGAGGTCGTTCAAGCGGAGGTACAAGATGA
CGACACCTTCATGTTGCTTGCCTGCGATGGCTTCTGGGATGTGATGGACG
CCGAGGAAGCAGTGGCACGTGGGGAGGAGCTGCTGGAGAAGGGCTTGACG
GCCACGGAGGCAGCAGCGCAGTTGGGGAATTTGGCGTTACGAATGGGGAG
CTCGGATAATGTGACGGTGGTGTTGGTGGTGTTCGAGCGCGAGGGGGAGG
GAGGGGGAGGAGGGGGGGAAAGGTAGATGGACGATGAGGGTGGCAGGGAG
GGAAGGAGGGAAGGAGGGAGCGGGAGCAGCTTGGGAGGGGAAACACCCAG
AGGAATATTGCTGCCTACAACGGCAGTTGCCCACCCGGGGGGGAGGGAGA
CTAATCCAGTGCAAAGAGATGAGGAGGGAAGGAGGGAAGGAGGAAGGACG
AAAGAAAGAAAGGGGTTGGGGTGGTCGTGTGGTGTGATATCCCTGCAGGG
TATCCGTAACCACCAAGAAGACCAGTACACTACCATTCCGGATTTGAGTC
TCGAGGAGGGGAAGGAGAAAAAGGAGGAGGAAGCACAAAGTTTCTACGCC
ATCTTCGACGGGCATTGCGGCGTGCGGGCGGCGCGGTATGCCCGGGAATT
AACGCACCATTATCTGGTTGCTGATCCCCTGTTTCCCTCCTTTCCGGGGA
AAGCCATGACAAATGTGTGTCGACGGTTGGATCGGGAGGTCCTGGAGATC
TGTGAGCGGGAGGGCTTGTATTGCGGGACAACGGCAATTATGGTGTTGAT
ACGAGGACGGACGGTGTATGTCGGGAATGTGGGGGATTGTGCGGCAGTCA
TGTGTAGGGGAGGGGTGGCCTTGGCTCTTTCGCAGGCCCAAACGCCGGGG
AGGCCCGACGAAACCCGGAGGATCGAGGGGGCGAATGGATGGGTGACGAC
GGAACGGGAGCTGTTTGTGGCGCAGTTGCACCGGATGGATTTGGCCGACC
CGAGTATTGCCAGTGGGGTGGAGAAGAGGGTAACGTGGGTGACGATTTAT
AGGGTGTGTGGGGAGCTGAGTGTGAGTAGGAGTATTGGTGATCCAGATTT
CAAGGGAGGGGTGGAGGGAGGGGAGAGCGATTTTCCCTTTCTGTACCCAC
CCGGGCATTCCCGGATCTTTTCCGCGGACCTTGTCATCGCAGACCCGGAG
GTCGTTCAAGCGGAGGTACAAGATGACGACACCTTCATGTTGCTTGCCTG
CGATGGCTTCTGGGATGTGATGGACGCCGAGGAAGCAGTGGCACGTGGGG
AGGAGCTGCTGGAGAAGGGCTTGACGGCCACGGAGGCAGCAGCGCAGTTG
GGGAATTTGGCGTTACGAATGGGGAGCTCGGATAATGTGACGGTGGTGTT
GGTGGTGTTCGAGCGCGAGGGGGAGGGAGGGGGAGGAGGGGGGGAAAGGT
AGATGGACGATGAGGGTGGCAGGGAGGGAAGGAGGGAAGGAGGGAGCGGG
AGCAGCTTGGGAGGGGAAACACCCAGAGGAATATTGCTGCCTACAACGGC
AGTTGCCCACCCGGGGGGGAGGGAGACTAATCCAGTGCAAAGAGATGAGG
AGGGAAGGAGGGAAGGAGGAAGGACGAAAGAAAGAAAGGGGTTGGGGTGG
TCGTGTGGTGTGATATCCCTGCAGGGTATCCGTAACCACCAAGAAGACCA
GTACACTACCATTCCGGATTTGAGTCTCGAGGAGGGGAAGGAGAAAAAGG
AGGAGGAAGCACAAAGTTTCTACGCCATCTTCGACGGGCATTGCGGCGTG
CGGGCGGCGCGGTATGCCCGGGAATTAACGCACCATTATCTGGTTGCTGA
TCCCCTGTTTCCCTCCTTTCCGGGGAAAGCCATGACAAATGTGTGTCGAC
GGTTGGATCGGGAGGTCCTGGAGATCTGTGAGCGGGAGGGCTTGTATTGC
GGGACAACGGCAATTATGGTGTTGATACGAGGACGGACGGTGTATGTCGG
GAATGTGGGGGATTGTGCGGCAGTCATGTGTAGGGGAGGGGTGGCCTTGG
CTCTTTCGCAGGCCCAAACGCCGGGGAGGCCCGACGAAACCCGGAGGATC
GAGGGGGCGAATGGATGGGTGACGACGGAACGGGAGCTGTTTGTGGCGCA
GTTGCACCGGATGGATTTGGCCGACCCGAGTATTGCCAGTGGGGTGGAGA
AGAGGGTAACGTGGGTGACGATTTATAGGGTGTGTGGGGAGCTGAGTGTG
AGTAGGAGTATTGGTGATCCAGATTTCAAGGGAGGGGTGGAGGGAGGGGA
GAGCGATTTTCCCTTTCTGTACCCACCCGGGCATTCCCGGATCTTTTCCG
CGGACCTTGTCATCGCAGACCCGGAGGTCGTTCAAGCGGAGGTACAAGAT
GACGACACCTTCATGTTGCTTGCCTGCGATGGCTTCTGGGATGTGATGGA
CGCCGAGGAAGCAGTGGCACGTGGGGAGGAGCTGCTGGAGAAGGGCTTGA
CGGCCACGGAGGCAGCAGCGCAGTTGGGGAATTTGGCGTTACGAATGGGG
AGCTCGGATAATGTGACGGTGGTGTTGGTGGTGTTCGAGCGCGAGGGGGA
GGGAGGGGGAGGAGGGGGGGAAAGGTAGATGGACGATGAGGGTGGCAGGG
AGGGAAGGAGGGAAGGAGGGAGCGGGAGCAGCTTGGGAGGGGAAACACCC
AGAGGAATATTGCTGCCTACAACGGCAGTTGCCCACCCGGGGGGGAGGGA
GACTAATCCAGTGCAAAGAGATGAGGAGGGAAGGAGGGAAGGAGGAAGGA
CGAAAGAAAGAAAGGGGTTGGGGTGGTCGTGTGGTGTGATATCCCTGCAG
GGTATCCGTAACCACCAAGAAGACCAGTACACTACCATTCCGGATTTGAG
TCTCGAGGAGGGGAAGGAGAAAAAGGAGGAGGAAGCACAAAGTTTCTACG
CCATCTTCGACGGGCATTGCGGCGTGCGGGCGGCGCGGTATGCCCGGGAA
TTAACGCACCATTATCTGGTTGCTGATCCCCTGTTTCCCTCCTTTCCGGG
GAAAGCCATGACAAATGTGTGTCGACGGTTGGATCGGGAGGTCCTGGAGA
TCTGTGAGCGGGAGGGCTTGTATTGCGGGACAACGGCAATTATGGTGTTG
ATACGAGGACGGACGGTGTATGTCGGGAATGTGGGGGATTGTGCGGCAGT
CATGTGTAGGGGAGGGGTGGCCTTGGCTCTTTCGCAGGCCCAAACGCCGG
GGAGGCCCGACGAAACCCGGAGGATCGAGGGGGCGAATGGATGGGTGACG
ACGGAACGGGAGCTGTTTGTGGCGCAGTTGCACCGGATGGATTTGGCCGA
CCCGAGTATTGCCAGTGGGGTGGAGAAGAGGGTAACGTGGGTGACGATTT
ATAGGGTGTGTGGGGAGCTGAGTGTGAGTAGGAGTATTGGTGATCCAGAT
TTCAAGGGAGGGGTGGAGGGAGGGGAGAGCGATTTTCCCTTTCTGTACCC
ACCCGGGCATTCCCGGATCTTTTCCGCGGACCTTGTCATCGCAGACCCGG
AGGTCGTTCAAGCGGAGGTACAAGATGACGACACCTTCATGTTGCTTGCC
TGCGATGGCTTCTGGGATGTGATGGACGCCGAGGAAGCAGTGGCACGTGG
GGAGGAGCTGCTGGAGAAGGGCTTGACGGCCACGGAGGCAGCAGCGCAGT
TGGGGAATTTGGCGTTACGAATGGGGAGCTCGGATAATGTGACGGTGGTG
TTGGTGGTGTTCGAGCGCGAGGGGGAGGGAGGGGGAGGAGGGGGGGAAAG
GTAG

Synonyms

Publications