jgi.p|Nanoce1779_2|593835, mRNA_6129 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593835
Unique NamemRNA_6129
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length588
Alignment locationscaffold_14:580804..581653 +

Link to JBrowse

Properties
Property NameValue
TranscriptId593921
TrackFilteredModels2
ProteinId593835
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:580804..581653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593835gene_6129Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593835mRNA_6129-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6129CDS_6129Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6129 ID=mRNA_6129|Name=jgi.p|Nanoce1779_2|593835|organism=Nannochloropsis oceanica|type=mRNA|length=588bp
ACAGCACAACACCAAATCTCTACACCTCAGGCCCCTTAACATCTTCTAAC
TCCTCTTCAGCATGTTTCAAGGTCGTCGAGTCCTCGCAACGTTTCTGTTG
GTGGTGGGCTTGCTGGGTACGGCCGCGTTTTATCTGCGGACAGCCCCGCC
ACCGGGGTCTTGCAGCGCACCTCACGCTGAGAAAAATGACATGACGACGC
GCCGCGCATGGATCCCCCAAATTGCCTTGAGTTTATTGACGCCACTAGTA
TTGACGGTGGGTGCCGGTGCCGGTGCCGCGCAAGCAGTGGACCCGGCCCG
CCTTGGCACGAAGAAGGATCCGGTGTACGAGAAATGTCTGAATCAGTGCA
TCTATTTTTGCCTCAAGCCCAAGGGCGTGAATGTGAGGACACGGTCGGAC
TGTCTGCAAGACTGCAAGGCGCAGTGTGCGCAGACGGACGCACAAAAGAT
GTTGGGGCTTCCGAAGAAGTGAGCGGGAGTTAGAAGGAGCACTCTAAGAG
GAATAGCGAATTTTTTTTCGAGGGATGCTCTCCGCAATTCCTTTGAGATA
TAGAAAGAAGACGAGAAACACTAAACAGATAATTATAA
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protein sequence of jgi.p|Nanoce1779_2|593835

>mRNA_6129-protein ID=mRNA_6129-protein|Name=jgi.p|Nanoce1779_2|593835|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MFQGRRVLATFLLVVGLLGTAAFYLRTAPPPGSCSAPHAEKNDMTTRRAW
IPQIALSLLTPLVLTVGAGAGAAQAVDPARLGTKKDPVYEKCLNQCIYFC
LKPKGVNVRTRSDCLQDCKAQCAQTDAQKMLGLPKK*
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mRNA from alignment at scaffold_14:580804..581653+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6129 ID=mRNA_6129|Name=jgi.p|Nanoce1779_2|593835|organism=Nannochloropsis oceanica|type=mRNA|length=850bp|location=Sequence derived from alignment at scaffold_14:580804..581653+ (Nannochloropsis oceanica)
ACAGCACAACACCAAATCTCTACACCTCAGGCCCCTTAACATCTTCTAAC
TCCTCTTCAGCATGTTTCAAGGTAGGGGTACTTTATCTGCCTTGCACAGG
CAGTCGCCTTGAGTTACTCGCCCAGTCACCCAGAGTGTGTGTCGCACCCC
GTTTGCATTGTCGAGGGCACGCGAGCACGCACAGGCTTACCACCAAGGAC
TTTGTGCCCCATCCCTCCCACACACGCACGCTTCTTTAGGTCGTCGAGTC
CTCGCAACGTTTCTGTTGGTGGTGGGCTTGCTGGGTACGGCCGCGTTTTA
TCTGCGGACAGCCCCGCCACCGGGGTCTTGCAGCGCACCTCACGCTGAGA
AAAATGACATGACGACGCGCCGCGCATGGATCCCCCAAATTGCCTTGAGT
TTATTGACGCCACTAGTATTGACGGTGGGTGCCGGTGCCGGTGCCGCGCA
AGCAGTGGTAAGTGCCTATTCTTCTTCATCTATCACTTTCACTAGCCAAA
ACTCTACTTCTTCTTTCTCTCTCATTTTTCTCTCCTCCACCCCTTCAACA
GGACCCGGCCCGCCTTGGCACGAAGAAGGATCCGGTGTACGAGAAATGTC
TGAATCAGTGCATCTATTTTTGCCTCAAGCCCAAGGGCGTGAATGTGAGG
ACACGGTCGGACTGTCTGCAAGACTGCAAGGCGCAGTGTGCGCAGACGGA
CGCACAAAAGATGTTGGGGCTTCCGAAGAAGTGAGCGGGAGTTAGAAGGA
GCACTCTAAGAGGAATAGCGAATTTTTTTTCGAGGGATGCTCTCCGCAAT
TCCTTTGAGATATAGAAAGAAGACGAGAAACACTAAACAGATAATTATAA
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Coding sequence (CDS) from alignment at scaffold_14:580804..581653+

>mRNA_6129 ID=mRNA_6129|Name=jgi.p|Nanoce1779_2|593835|organism=Nannochloropsis oceanica|type=CDS|length=1233bp|location=Sequence derived from alignment at scaffold_14:580804..581653+ (Nannochloropsis oceanica)
ATGTTTCAAGGTCGTCGAGTCCTCGCAACGTTTCTGTTGGTGGTGGGCTT
GCTGGGTACGGCCGCGTTTTATCTGCGGACAGCCCCGCCACCGGGGTCTT
GCAGCGCACCTCACGCTGAGAAAAATGACATGACGACGCGCCGCGCATGG
ATCCCCCAAATTGCCTTGAGTTTATTGACGCCACTAGTATTGACGGTGGG
TGCCGGTGCCGGTGCCGCGCAAGCAGTGGACCCGGCCCGCCTTGGCACGA
AGAAGGATCCGGTGTACGAGAAATGTCTGAATCAGTGCATCTATTTTTGC
CTCAAGCCCAAGGGCGTGAATGTGAGGACACGGTCGGACTGTCTGCAAGA
CTGCAAGGCGCAGTGTGCGCAGACGGACGCACAAAAGATGTTGGGGCTTC
CGAAGAAGTGAATGTTTCAAGGTCGTCGAGTCCTCGCAACGTTTCTGTTG
GTGGTGGGCTTGCTGGGTACGGCCGCGTTTTATCTGCGGACAGCCCCGCC
ACCGGGGTCTTGCAGCGCACCTCACGCTGAGAAAAATGACATGACGACGC
GCCGCGCATGGATCCCCCAAATTGCCTTGAGTTTATTGACGCCACTAGTA
TTGACGGTGGGTGCCGGTGCCGGTGCCGCGCAAGCAGTGGACCCGGCCCG
CCTTGGCACGAAGAAGGATCCGGTGTACGAGAAATGTCTGAATCAGTGCA
TCTATTTTTGCCTCAAGCCCAAGGGCGTGAATGTGAGGACACGGTCGGAC
TGTCTGCAAGACTGCAAGGCGCAGTGTGCGCAGACGGACGCACAAAAGAT
GTTGGGGCTTCCGAAGAAGTGAATGTTTCAAGGTCGTCGAGTCCTCGCAA
CGTTTCTGTTGGTGGTGGGCTTGCTGGGTACGGCCGCGTTTTATCTGCGG
ACAGCCCCGCCACCGGGGTCTTGCAGCGCACCTCACGCTGAGAAAAATGA
CATGACGACGCGCCGCGCATGGATCCCCCAAATTGCCTTGAGTTTATTGA
CGCCACTAGTATTGACGGTGGGTGCCGGTGCCGGTGCCGCGCAAGCAGTG
GACCCGGCCCGCCTTGGCACGAAGAAGGATCCGGTGTACGAGAAATGTCT
GAATCAGTGCATCTATTTTTGCCTCAAGCCCAAGGGCGTGAATGTGAGGA
CACGGTCGGACTGTCTGCAAGACTGCAAGGCGCAGTGTGCGCAGACGGAC
GCACAAAAGATGTTGGGGCTTCCGAAGAAGTGA
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Synonyms
Publications