jgi.p|Nanoce1779_2|640391, mRNA_6432 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|640391
Unique NamemRNA_6432
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length675
Alignment locationscaffold_15:615284..616595 +

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Properties
Property NameValue
TranscriptId640477
TrackFilteredModels2
ProteinId640391
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:615284..616595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640391gene_6432Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640391mRNA_6432-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6432CDS_6432Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6432 ID=mRNA_6432|Name=jgi.p|Nanoce1779_2|640391|organism=Nannochloropsis oceanica|type=mRNA|length=675bp
ATGGCCAAGGTAGCCCCCCTCGTCAAGCCCAAGAGCATCGTAAAGAAGCG
CACGAAGAAGTTCGGACGCTTCCAAGCCGACCGCTTCATGCGCATCTCCC
GCACCTCCTGGCGCAAGCCCAAGGGTATCGATGGCCGGGCTCGTCGTCGC
TTCAAGGGCGCCACGCTTCTGCCCAACATCGGGTATGGGTCTGATGCCAA
GACCCGTAACCTGTTGCCGAACGGTTTCTACAAGTTCGTGGTCAACAACC
CCCAGGAGGTGGAGCTCCTGCTGTTGCACAACCGCAAGTATTCTGCCGAG
ATCGCGCACAACGTCAGCAGCCGTAAGCGCAAGGCGATTGTGGAGAAGGC
GGAACAGCTGGGCGTGAAGGTCACCAACGCCGCGGCCAAGCTTCGGGCAG
AGGAGGACGACGGTATGTCGGACAGCTCCTTTGCGGCCGTGTCGCGGTAC
CGCGGGTTTTTGGAAGTCATCGACGCGGAGTGGATGGCAGATGCCCTAAG
TGACGATGAGCTTGACGTGCCAGCCGCGAATGACCTTCTTTTGGATGATG
ATGACGACGACGACGTCACGGAGGGCGGGGCGCAAGGTGCAGGTGGGGTG
GCGGGCGTTGGCAAGCGGCCGAACCTAGAGGACCGATGGGGAGACTTGGG
TCTGGAGCACTTACAACCAGAGTAG
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protein sequence of jgi.p|Nanoce1779_2|640391

>mRNA_6432-protein ID=mRNA_6432-protein|Name=jgi.p|Nanoce1779_2|640391|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MAKVAPLVKPKSIVKKRTKKFGRFQADRFMRISRTSWRKPKGIDGRARRR
FKGATLLPNIGYGSDAKTRNLLPNGFYKFVVNNPQEVELLLLHNRKYSAE
IAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEEDDGMSDSSFAAVSRY
RGFLEVIDAEWMADALSDDELDVPAANDLLLDDDDDDDVTEGGAQGAGGV
AGVGKRPNLEDRWGDLGLEHLQPE*
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mRNA from alignment at scaffold_15:615284..616595+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6432 ID=mRNA_6432|Name=jgi.p|Nanoce1779_2|640391|organism=Nannochloropsis oceanica|type=mRNA|length=1312bp|location=Sequence derived from alignment at scaffold_15:615284..616595+ (Nannochloropsis oceanica)
ATGGCCAAGGTAGCCCCCCTCGTCAAGCCCAAGAGCATCGTAAAGAAGCG
CACGAAGAAGTTCGGACGCTTCCAAGCCGACCGCTTCATGCGCATCTCCC
GCACCTCCTGGCGCAAGCCCAAGGGTATCGATGGCCGGGCTCGTCGTCGC
TTCAAGGGCGCCACGCTTCTGCCCAACATCGGGTATGGGTCTGATGCCAA
GACCCGTAACCTGTTGCCGAACGGTTTCTACAAGTTCGTGGTCAACAACC
CCCAGGAGGTGGAGCTCCTGCTGTTGCACAACCGCAAGTATTCTGCCGAG
ATCGCGCACAACGTCAGCAGCCGTAAGCGCAAGGCGATTGTGGAGAAGGC
GGAACAGCTGGGCGTGAAGGTCACCAACGCCGCGGCCAAGCTTCGGGCAG
AGGAGGACGAGTAAATGTCAGGGCCTAGTGTGTGTAGGGGGGTTTAGTGA
GAAAGTCGGGAGGGGGCAGTGAGAAAACGACGGGCAAGCTAGTGACGACG
CGTGGAAGGGAAAGTGTCTCTTGAAAGAAAGAAAAAGGAAACCTGAACAC
GCAGCGAAAAAGGCTCGACCCGTGGGACCACTGCTTACGGGGAACGGGAA
AAATAGGGTTGTCACATAGATCAAATTTCGCTTGCATTTTTTTGTTTACC
CGGAAAGAAATTATCTCTTTTCTTTTTCTTCGCCTTGTCTTGCGTTGGTA
CGTGCAGGTGGTGGCCGTGTGGTAAGGGGTAGTGACGGCAGGAGGGAGTG
GGAGGTTTTGTCAAGCAGGACGGGTTCCTCTCATGGCCGCCAATCTTGGA
CGGTTTTCACAAGACGTTTGGCATTTTTTGCATCTGTTACGAAGGACCTT
GAGTTTTTGCGCGTTAATCGGGCTGGTTGTAGGTGAAGACACCGGGAGGA
CCCAGACATGGGCCTTCGCTCAAGGTGGCTCTTTGGCTTCTTGCCCTCTT
CCGCCCACCATCATCTCCTCCCCTACCCACTCATCCCCCCACGCCGCACC
AATACCACACATAAGACAGACACGAATCATCGCAGTCCTCCTCCAAGCGG
TATGTCGGACAGCTCCTTTGCGGCCGTGTCGCGGTACCGCGGGTTTTTGG
AAGTCATCGACGCGGAGTGGATGGCAGATGCCCTAAGTGACGATGAGCTT
GACGTGCCAGCCGCGAATGACCTTCTTTTGGATGATGATGACGACGACGA
CGTCACGGAGGGCGGGGCGCAAGGTGCAGGTGGGGTGGCGGGCGTTGGCA
AGCGGCCGAACCTAGAGGACCGATGGGGAGACTTGGGTCTGGAGCACTTA
CAACCAGAGTAG
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Coding sequence (CDS) from alignment at scaffold_15:615284..616595+

>mRNA_6432 ID=mRNA_6432|Name=jgi.p|Nanoce1779_2|640391|organism=Nannochloropsis oceanica|type=CDS|length=1350bp|location=Sequence derived from alignment at scaffold_15:615284..616595+ (Nannochloropsis oceanica)
ATGGCCAAGGTAGCCCCCCTCGTCAAGCCCAAGAGCATCGTAAAGAAGCG
CACGAAGAAGTTCGGACGCTTCCAAGCCGACCGCTTCATGCGCATCTCCC
GCACCTCCTGGCGCAAGCCCAAGGGTATCGATGGCCGGGCTCGTCGTCGC
TTCAAGGGCGCCACGCTTCTGCCCAACATCGGGTATGGGTCTGATGCCAA
GACCCGTAACCTGTTGCCGAACGGTTTCTACAAGTTCGTGGTCAACAACC
CCCAGGAGGTGGAGCTCCTGCTGTTGCACAACCGCAAGTATTCTGCCGAG
ATCGCGCACAACGTCAGCAGCCGTAAGCGCAAGGCGATTGTGGAGAAGGC
GGAACAGCTGGGCGTGAAGGTCACCAACGCCGCGGCCAAGCTTCGGGCAG
AGGAGGACGACGGTATGTCGGACAGCTCCTTTGCGGCCGTGTCGCGGTAC
CGCGGGTTTTTGGAAGTCATCGACGCGGAGTGGATGGCAGATGCCCTAAG
TGACGATGAGCTTGACGTGCCAGCCGCGAATGACCTTCTTTTGGATGATG
ATGACGACGACGACGTCACGGAGGGCGGGGCGCAAGGTGCAGGTGGGGTG
GCGGGCGTTGGCAAGCGGCCGAACCTAGAGGACCGATGGGGAGACTTGGG
TCTGGAGCACTTACAACCAGAGTAGATGGCCAAGGTAGCCCCCCTCGTCA
AGCCCAAGAGCATCGTAAAGAAGCGCACGAAGAAGTTCGGACGCTTCCAA
GCCGACCGCTTCATGCGCATCTCCCGCACCTCCTGGCGCAAGCCCAAGGG
TATCGATGGCCGGGCTCGTCGTCGCTTCAAGGGCGCCACGCTTCTGCCCA
ACATCGGGTATGGGTCTGATGCCAAGACCCGTAACCTGTTGCCGAACGGT
TTCTACAAGTTCGTGGTCAACAACCCCCAGGAGGTGGAGCTCCTGCTGTT
GCACAACCGCAAGTATTCTGCCGAGATCGCGCACAACGTCAGCAGCCGTA
AGCGCAAGGCGATTGTGGAGAAGGCGGAACAGCTGGGCGTGAAGGTCACC
AACGCCGCGGCCAAGCTTCGGGCAGAGGAGGACGACGGTATGTCGGACAG
CTCCTTTGCGGCCGTGTCGCGGTACCGCGGGTTTTTGGAAGTCATCGACG
CGGAGTGGATGGCAGATGCCCTAAGTGACGATGAGCTTGACGTGCCAGCC
GCGAATGACCTTCTTTTGGATGATGATGACGACGACGACGTCACGGAGGG
CGGGGCGCAAGGTGCAGGTGGGGTGGCGGGCGTTGGCAAGCGGCCGAACC
TAGAGGACCGATGGGGAGACTTGGGTCTGGAGCACTTACAACCAGAGTAG
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Synonyms
Publications