jgi.p|Nanoce1779_2|595372, mRNA_7037 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595372
Unique NamemRNA_7037
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length980
Alignment locationscaffold_16:128750..130200 -

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Properties
Property NameValue
TranscriptId595458
TrackFilteredModels2
ProteinId595372
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:128750..130200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595372gene_7037Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595372mRNA_7037-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7037CDS_7037Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7037 ID=mRNA_7037|Name=jgi.p|Nanoce1779_2|595372|organism=Nannochloropsis oceanica|type=mRNA|length=980bp
ACAGGGGGGAAGGCAAGGAGGCAGATTCTCGCTTTTAATCGGGCAGGGAG
GGACACGTCGTTGCAGCCCAGCCTCCTCACCCTTCGCTCCTTGCTTCTTT
CTCTCCACCAGAGGGGAGCAAGAGAAGCATCCCATCCCCCTCGTCCCACC
ACACACACGCCGCTGTCGCCGCAGTTGTTGCTGTTACACGCTAAACAGCA
GCAGCAGCAGCTGCAGCAGCAGCCGTAGCGGAGGGCAACCATGGCATCTC
CGAAAAGAATGGCCTTGTCGATCCATGACTCGGTGCGACTGACAACAGTC
AAGGGCGAGATAGTGCAAGGAAGTGTGCACGCGCTAGACGAGACCACAAG
TACACTAGTGCTGCGTCTGGGAGATGACTCAACACTTTCCTCCACCTCCT
CCGCCAACGCTGCTGCTCGCGTCAGGGCGGGGAACGGTGGGGGTCACTTC
CTTCGTTTCTTGAGTGTCAAAAGCATCAGGACGATCGAGGTGGGAGGTGC
CCACAGAGGGAAAAAAAAGGGAGCAGCAGCAGGGGTGACTGGTGAAGAGT
CCTCTTCCGCCGCAACAGCTGCAGCTGCAGGGAGAGGGAGCGGGGGAGGG
ATCAACGACGAAAAGCTGGCGAAGCTGGAGAAGGAGTCCAGGGGTAAGGC
GGCGAGGGAAATTGCCAAGATCAATCCATCGGCAAGTCCCCAGGGGCAGA
TGAGCTTCGACCACATCAGCAAAATCTACTCAGACACGCGCTGGAGCGGT
CAGAGCATCTTAATCATGGATCAAGTGCGCATCGACCCCCCCTATCACAA
CAAGGGAGACATCAAGACACTCGACGCTTCCGTGAAGAGTGAGTTTATCG
ATCGCCTGCTCACCATGATGGAGAACGCGGATAAGAAGCTGGCAAGGAAG
TAGGGAGGGAGGGAGGGACGGAGGGGTGTGCTGCATATTCCTGGACATTG
GCCACTAGGGCGATGAGTGATTGAGCGGGA
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protein sequence of jgi.p|Nanoce1779_2|595372

>mRNA_7037-protein ID=mRNA_7037-protein|Name=jgi.p|Nanoce1779_2|595372|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MASPKRMALSIHDSVRLTTVKGEIVQGSVHALDETTSTLVLRLGDDSTLS
STSSANAAARVRAGNGGGHFLRFLSVKSIRTIEVGGAHRGKKKGAAAGVT
GEESSSAATAAAAGRGSGGGINDEKLAKLEKESRGKAAREIAKINPSASP
QGQMSFDHISKIYSDTRWSGQSILIMDQVRIDPPYHNKGDIKTLDASVKS
EFIDRLLTMMENADKKLARK*
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mRNA from alignment at scaffold_16:128750..130200-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7037 ID=mRNA_7037|Name=jgi.p|Nanoce1779_2|595372|organism=Nannochloropsis oceanica|type=mRNA|length=1451bp|location=Sequence derived from alignment at scaffold_16:128750..130200- (Nannochloropsis oceanica)
ACAGGGGGGAAGGCAAGGAGGCAGATTCTCGCTTTTAATCGGGCAGGGAG
GGACACGTCGTTGCAGCCCAGCCTCCTCACCCTTCGCTCCTTGCTTCTTT
CTCTCCACCAGAGGGGAGCAAGAGAAGCATCCCATCCCCCTCGTCCCACC
ACACACACGCCGCTGTCGCCGCAGTTGTTGCTGTTACACGCTAAACAGCA
GCAGCAGCAGCTGCAGCAGCAGCCGTAGCGGAGGGCAACCATGGCATCTC
CGAAAAGAATGGCCTTGTCGATCCATGACTCGGTGCGACTGACAACAGTC
AAGGGCGAGATAGTGCAAGGAAGTGTGCACGCGCTAGACGAGACCACAAG
TACACTAGTGCTGCGTCTGGGAGGTAAGTAGGGAAGAAGAGAGAAAAGGA
GGGGGGGTGCTGTCCTTGGGGCGTGAGTGCATGCCCCTCAAAATTTACTC
TCCCTCCTTCCCTCCCTGTCCATCACCCTCTCCATCCTCTGTCCACGCCG
CTTGTTGTCTGACGACGGGTAACTGCGGGATACCCCCACCTCGCTGCTTG
AGCTGCATCCTCACCTATCCCCCCTCCCTCGCCCTTCCATCTTCTTTCTG
ACACAGATGACTCAACACTTTCCTCCACCTCCTCCGCCAACGCTGCTGCT
CGCGTCAGGGCGGGGAACGGTGGGGGTCACTTCCTTCGTTTCTTGAGTGT
CAAAAGCATCAGGACGATCGAGGTGGGAGGTGCCCACAGAGGGAAAAAAA
AGGGAGCAGCAGCAGGGGTGACTGGTGAAGAGTCCTCTTCCGCCGCAACA
GCTGCAGCTGCAGGGAGAGGGAGCGGGGGAGGGATCAACGACGAAAAGCT
GGCGAAGCTGGAGAAGGAGTCCAGGGGTAAGGCGGCGAGGGAAATTGCCA
AGATCAATCCATCGGCAAGTCCCCAGGGGCAGATGAGCTTCGACCACATC
AGCAAAATGTGCGCAAAGGGGGAGGGAGGGAGGCAGGGAGGGAGGCAGGA
GGAATTTGGTTATGGTACGGGTTATACATCGGCGAATCTGGAGGGACAGG
AAAGCTTTGACCACGCAAGTAAAACGCATATGTCTTCCCTTCCTCTTTTC
CCTTCCCGTCTTCCTTCCTTCTAATCCCTTTCTTTCCTTTTCCATGCACT
GACCCTCCCTCCCTCCCTCTTTCCCTCCCTCGCTCCCTTACGTCAGCTAC
TCAGACACGCGCTGGAGCGGTCAGAGCATCTTAATCATGGATCAAGTGCG
CATCGACCCCCCCTATCACAACAAGGGAGACATCAAGACACTCGACGCTT
CCGTGAAGAGTGAGTTTATCGATCGCCTGCTCACCATGATGGAGAACGCG
GATAAGAAGCTGGCAAGGAAGTAGGGAGGGAGGGAGGGACGGAGGGGTGT
GCTGCATATTCCTGGACATTGGCCACTAGGGCGATGAGTGATTGAGCGGG
A
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Coding sequence (CDS) from alignment at scaffold_16:128750..130200-

>mRNA_7037 ID=mRNA_7037|Name=jgi.p|Nanoce1779_2|595372|organism=Nannochloropsis oceanica|type=CDS|length=1989bp|location=Sequence derived from alignment at scaffold_16:128750..130200- (Nannochloropsis oceanica)
CTACTCAGACACGCGCTGGAGCGGTCAGAGCATCTTAATCATGGATCAAG
TGCGCATCGACCCCCCCTATCACAACAAGGGAGACATCAAGACACTCGAC
GCTTCCGTGAAGAGTGAGTTTATCGATCGCCTGCTCACCATGATGGAGAA
CGCGGATAAGAAGCTGGCAAGGAAGTAGATGACTCAACACTTTCCTCCAC
CTCCTCCGCCAACGCTGCTGCTCGCGTCAGGGCGGGGAACGGTGGGGGTC
ACTTCCTTCGTTTCTTGAGTGTCAAAAGCATCAGGACGATCGAGGTGGGA
GGTGCCCACAGAGGGAAAAAAAAGGGAGCAGCAGCAGGGGTGACTGGTGA
AGAGTCCTCTTCCGCCGCAACAGCTGCAGCTGCAGGGAGAGGGAGCGGGG
GAGGGATCAACGACGAAAAGCTGGCGAAGCTGGAGAAGGAGTCCAGGGGT
AAGGCGGCGAGGGAAATTGCCAAGATCAATCCATCGGCAAGTCCCCAGGG
GCAGATGAGCTTCGACCACATCAGCAAAATATGGCATCTCCGAAAAGAAT
GGCCTTGTCGATCCATGACTCGGTGCGACTGACAACAGTCAAGGGCGAGA
TAGTGCAAGGAAGTGTGCACGCGCTAGACGAGACCACAAGTACACTAGTG
CTGCGTCTGGGAGCTACTCAGACACGCGCTGGAGCGGTCAGAGCATCTTA
ATCATGGATCAAGTGCGCATCGACCCCCCCTATCACAACAAGGGAGACAT
CAAGACACTCGACGCTTCCGTGAAGAGTGAGTTTATCGATCGCCTGCTCA
CCATGATGGAGAACGCGGATAAGAAGCTGGCAAGGAAGTAGATGACTCAA
CACTTTCCTCCACCTCCTCCGCCAACGCTGCTGCTCGCGTCAGGGCGGGG
AACGGTGGGGGTCACTTCCTTCGTTTCTTGAGTGTCAAAAGCATCAGGAC
GATCGAGGTGGGAGGTGCCCACAGAGGGAAAAAAAAGGGAGCAGCAGCAG
GGGTGACTGGTGAAGAGTCCTCTTCCGCCGCAACAGCTGCAGCTGCAGGG
AGAGGGAGCGGGGGAGGGATCAACGACGAAAAGCTGGCGAAGCTGGAGAA
GGAGTCCAGGGGTAAGGCGGCGAGGGAAATTGCCAAGATCAATCCATCGG
CAAGTCCCCAGGGGCAGATGAGCTTCGACCACATCAGCAAAATATGGCAT
CTCCGAAAAGAATGGCCTTGTCGATCCATGACTCGGTGCGACTGACAACA
GTCAAGGGCGAGATAGTGCAAGGAAGTGTGCACGCGCTAGACGAGACCAC
AAGTACACTAGTGCTGCGTCTGGGAGCTACTCAGACACGCGCTGGAGCGG
TCAGAGCATCTTAATCATGGATCAAGTGCGCATCGACCCCCCCTATCACA
ACAAGGGAGACATCAAGACACTCGACGCTTCCGTGAAGAGTGAGTTTATC
GATCGCCTGCTCACCATGATGGAGAACGCGGATAAGAAGCTGGCAAGGAA
GTAGATGACTCAACACTTTCCTCCACCTCCTCCGCCAACGCTGCTGCTCG
CGTCAGGGCGGGGAACGGTGGGGGTCACTTCCTTCGTTTCTTGAGTGTCA
AAAGCATCAGGACGATCGAGGTGGGAGGTGCCCACAGAGGGAAAAAAAAG
GGAGCAGCAGCAGGGGTGACTGGTGAAGAGTCCTCTTCCGCCGCAACAGC
TGCAGCTGCAGGGAGAGGGAGCGGGGGAGGGATCAACGACGAAAAGCTGG
CGAAGCTGGAGAAGGAGTCCAGGGGTAAGGCGGCGAGGGAAATTGCCAAG
ATCAATCCATCGGCAAGTCCCCAGGGGCAGATGAGCTTCGACCACATCAG
CAAAATATGGCATCTCCGAAAAGAATGGCCTTGTCGATCCATGACTCGGT
GCGACTGACAACAGTCAAGGGCGAGATAGTGCAAGGAAGTGTGCACGCGC
TAGACGAGACCACAAGTACACTAGTGCTGCGTCTGGGAG
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Synonyms
Publications